nirs4all.pipeline.dagml package

Submodules

• nirs4all.pipeline.dagml.attested_by_source module
  • bind_source_output_contract()
  • execute_attested_by_source_cv()
  • validate_source_archive_before_model()
  • validate_source_package_bindings()
• nirs4all.pipeline.dagml.auto_transfer module
  • DagMLAutoTransferPreprocessor
    • DagMLAutoTransferPreprocessor.fit()
    • DagMLAutoTransferPreprocessor.fit_selected()
    • DagMLAutoTransferPreprocessor.fit_with_views()
    • DagMLAutoTransferPreprocessor.select_with_views()
    • DagMLAutoTransferPreprocessor.set_input_channels()
    • DagMLAutoTransferPreprocessor.transform()
• nirs4all.pipeline.dagml.autogluon_estimator module
  • DagMLAutoGluonEstimator
    • DagMLAutoGluonEstimator.fit()
    • DagMLAutoGluonEstimator.load_external_directory()
    • DagMLAutoGluonEstimator.predict()
    • DagMLAutoGluonEstimator.predict_proba()
  • autogluon_step_estimator()
• nirs4all.pipeline.dagml.cancellation module
  • DagRunCancelled
  • check_cancellation()
• nirs4all.pipeline.dagml.chart_projection module
  • render_run_charts()
  • validate_chart_projection()
• nirs4all.pipeline.dagml.cli_runner module
  • assemble_constrained_cv_refit_dsl()
  • assemble_cv_refit_dsl()
  • data_bindings_for()
  • data_bindings_for_fitted_x_chain()
  • data_bindings_for_nodes()
  • model_node_id()
  • needs_dynamic_feature_axis()
  • run_cv_refit_bundle()
  • run_refit_phase_cli()
  • split_invocation_for()
  • write_launcher_shim()
• nirs4all.pipeline.dagml.conformal_contracts module
  • CalibratedPredictionBlock
    • CalibratedPredictionBlock.coverages
    • CalibratedPredictionBlock.group_keys
    • CalibratedPredictionBlock.interval()
    • CalibratedPredictionBlock.intervals
    • CalibratedPredictionBlock.method
    • CalibratedPredictionBlock.unit
    • CalibratedPredictionBlock.y_pred
  • CalibratedRunResult
    • CalibratedRunResult.artifact
    • CalibratedRunResult.calibration_replay_source
    • CalibratedRunResult.conformal_guarantee_status
    • CalibratedRunResult.fingerprint
    • CalibratedRunResult.from_dict()
    • CalibratedRunResult.from_json()
    • CalibratedRunResult.load_json()
    • CalibratedRunResult.metadata
    • CalibratedRunResult.metrics()
    • CalibratedRunResult.prediction
    • CalibratedRunResult.robustness()
    • CalibratedRunResult.sample_ids
    • CalibratedRunResult.save_json()
    • CalibratedRunResult.to_dict()
    • CalibratedRunResult.to_json()
    • CalibratedRunResult.to_predict_result()
    • CalibratedRunResult.tuning_calibration_source
    • CalibratedRunResult.version
  • ConformalCalibrationArtifact
    • ConformalCalibrationArtifact.calibration_cohort
    • ConformalCalibrationArtifact.calibration_data_fingerprint
    • ConformalCalibrationArtifact.calibration_size
    • ConformalCalibrationArtifact.calibrator
    • ConformalCalibrationArtifact.fingerprint
    • ConformalCalibrationArtifact.from_dict()
    • ConformalCalibrationArtifact.from_json()
    • ConformalCalibrationArtifact.group_calibrators
    • ConformalCalibrationArtifact.load_json()
    • ConformalCalibrationArtifact.predictor_fingerprint
    • ConformalCalibrationArtifact.save_json()
    • ConformalCalibrationArtifact.spec
    • ConformalCalibrationArtifact.target_name
    • ConformalCalibrationArtifact.to_dict()
    • ConformalCalibrationArtifact.to_json()
    • ConformalCalibrationArtifact.version
  • ConformalCalibrationCohortManifest
    • ConformalCalibrationCohortManifest.fingerprint
    • ConformalCalibrationCohortManifest.from_dict()
    • ConformalCalibrationCohortManifest.groups
    • ConformalCalibrationCohortManifest.n_samples
    • ConformalCalibrationCohortManifest.rows
    • ConformalCalibrationCohortManifest.sample_ids
    • ConformalCalibrationCohortManifest.to_dict()
    • ConformalCalibrationCohortManifest.unit
    • ConformalCalibrationCohortManifest.version
  • ConformalCalibrationCohortRow
    • ConformalCalibrationCohortRow.from_dict()
    • ConformalCalibrationCohortRow.group
    • ConformalCalibrationCohortRow.metadata
    • ConformalCalibrationCohortRow.role
    • ConformalCalibrationCohortRow.row_index
    • ConformalCalibrationCohortRow.sample_id
    • ConformalCalibrationCohortRow.to_dict()
  • ConformalCalibrationSpec
    • ConformalCalibrationSpec.coverage
    • ConformalCalibrationSpec.fingerprint
    • ConformalCalibrationSpec.group_by
    • ConformalCalibrationSpec.method
    • ConformalCalibrationSpec.multi_target
    • ConformalCalibrationSpec.to_dict()
    • ConformalCalibrationSpec.unit
  • ConformalIntervalBlock
    • ConformalIntervalBlock.coverage
    • ConformalIntervalBlock.lower
    • ConformalIntervalBlock.qhat
    • ConformalIntervalBlock.upper
  • ConformalMetricSet
    • ConformalMetricSet.coverage
    • ConformalMetricSet.coverage_gap
    • ConformalMetricSet.fingerprint
    • ConformalMetricSet.mean_interval_score
    • ConformalMetricSet.mean_width
    • ConformalMetricSet.median_width
    • ConformalMetricSet.n_covered
    • ConformalMetricSet.n_missed_above
    • ConformalMetricSet.n_missed_below
    • ConformalMetricSet.n_samples
    • ConformalMetricSet.observed_coverage
    • ConformalMetricSet.to_dict()
    • ConformalMetricSet.unit
    • ConformalMetricSet.version
  • SplitConformalCalibrator
    • SplitConformalCalibrator.apply()
    • SplitConformalCalibrator.apply_block()
    • SplitConformalCalibrator.coverages
    • SplitConformalCalibrator.method
    • SplitConformalCalibrator.qhat_by_coverage
    • SplitConformalCalibrator.scores
    • SplitConformalCalibrator.unit
  • apply_conformal_artifact_to_predictions()
  • apply_split_conformal_calibrator()
  • calibrate_replayed_predictions()
  • conformal_finite_sample_quantile()
  • conformal_guarantee_status()
  • evaluate_conformal_prediction()
  • fit_conformal_calibration_artifact()
  • fit_split_absolute_residual_calibrator()
  • normalize_conformal_calibration_cohort()
  • normalize_coverages()
  • parse_conformal_calibration_spec()
• nirs4all.pipeline.dagml.conformal_store module
  • ConformalStoreManifest
    • ConformalStoreManifest.artifact_fingerprint
    • ConformalStoreManifest.files
    • ConformalStoreManifest.fingerprint
    • ConformalStoreManifest.from_dict()
    • ConformalStoreManifest.load_json()
    • ConformalStoreManifest.result_fingerprint
    • ConformalStoreManifest.schema_id
    • ConformalStoreManifest.to_dict()
    • ConformalStoreManifest.version
  • attach_conformal_result_to_bundle()
  • export_conformal_result_bundle()
  • load_conformal_result_archive()
  • load_conformal_result_bundle()
  • load_conformal_result_store()
  • save_conformal_result_store()
• nirs4all.pipeline.dagml.core_archive_replay module
  • CoreArchiveDependencyError
  • CoreArchiveReplayError
  • CoreArchiveValidation
    • CoreArchiveValidation.core
    • CoreArchiveValidation.methods_library_path
    • CoreArchiveValidation.methods_library_sha256
    • CoreArchiveValidation.package
    • CoreArchiveValidation.predictors
  • detect_core_archive_version()
  • predict_core_methods_archive_v2()
  • validate_core_methods_archive_v2()
• nirs4all.pipeline.dagml.cv_weight_transfer module
  • CVWeightTransferStore
    • CVWeightTransferStore.capture()
    • CVWeightTransferStore.clear()
    • CVWeightTransferStore.close()
    • CVWeightTransferStore.pending_bytes
    • CVWeightTransferStore.pending_count
    • CVWeightTransferStore.prepare_refit()
    • CVWeightTransferStore.run_id
  • TransferIdentity
    • TransferIdentity.as_dict()
    • TransferIdentity.controller_id
    • TransferIdentity.node_id
    • TransferIdentity.run_id
    • TransferIdentity.variant_label
  • TransferInputContract
    • TransferInputContract.as_dict()
    • TransferInputContract.feature_names
    • TransferInputContract.source_names
    • TransferInputContract.target_names
    • TransferInputContract.x_dtype
    • TransferInputContract.y_dtype
  • WarmStartRequest
    • WarmStartRequest.fold_id
  • parse_warm_start_request()
  • validate_sgd_profile()
  • validate_transfer_input()
• nirs4all.pipeline.dagml.data_provider module
  • prepare_data_provider()
• nirs4all.pipeline.dagml.dataset module
• nirs4all.pipeline.dagml.detect module
• nirs4all.pipeline.dagml.envelope module
  • build_envelope()
  • num_targets()
  • sample_relations()
  • source_ids()
  • source_order()
  • supports_terminal_prediction_relation_authority()
  • target_names()
• nirs4all.pipeline.dagml.errors module
  • DagMlExportRefusal
  • DagMlMigrationRequired
  • DagMlPipelinePreflightRequired
  • DagMlStatefulConcatTransformMigrationRequired
  • DagMlUnavailable
  • DagMlUnsupported
• nirs4all.pipeline.dagml.estimator module
  • DagMLFitIdentityFrame
    • DagMLFitIdentityFrame.explicit_sample_ids
    • DagMLFitIdentityFrame.fingerprint
    • DagMLFitIdentityFrame.group_by_sample_int()
    • DagMLFitIdentityFrame.groups
    • DagMLFitIdentityFrame.metadata_by_sample_id()
    • DagMLFitIdentityFrame.metadata_by_sample_int()
    • DagMLFitIdentityFrame.metadata_rows
    • DagMLFitIdentityFrame.n_samples
    • DagMLFitIdentityFrame.sample_ids
  • DagMLPipelineEstimator
    • DagMLPipelineEstimator.detach_native_training_result()
    • DagMLPipelineEstimator.execute_compiled_replay()
    • DagMLPipelineEstimator.export_native_archive()
    • DagMLPipelineEstimator.fit()
    • DagMLPipelineEstimator.native_runtime_client()
    • DagMLPipelineEstimator.predict()
    • DagMLPipelineEstimator.predict_proba()
    • DagMLPipelineEstimator.predict_with_identity()
    • DagMLPipelineEstimator.replay_with_identity()
    • DagMLPipelineEstimator.select_portable_output()
    • DagMLPipelineEstimator.set_fit_request()
  • DagMLPredictIdentityFrame
    • DagMLPredictIdentityFrame.data_content_fingerprint
    • DagMLPredictIdentityFrame.explicit_sample_ids
    • DagMLPredictIdentityFrame.fingerprint
    • DagMLPredictIdentityFrame.group_by_sample_id()
    • DagMLPredictIdentityFrame.groups
    • DagMLPredictIdentityFrame.metadata_by_sample_id()
    • DagMLPredictIdentityFrame.metadata_rows
    • DagMLPredictIdentityFrame.n_samples
    • DagMLPredictIdentityFrame.sample_ids
  • DagMLReplayCompiler
    • DagMLReplayCompiler.compile_replay()
  • DagMLReplayExecution
    • DagMLReplayExecution.artifact_callback
    • DagMLReplayExecution.artifact_handles
    • DagMLReplayExecution.cleanup
    • DagMLReplayExecution.data_envelopes
    • DagMLReplayExecution.diagnostics
    • DagMLReplayExecution.methods_inputs
    • DagMLReplayExecution.methods_library_path
    • DagMLReplayExecution.op_callback
    • DagMLReplayExecution.outcome_id
    • DagMLReplayExecution.request
    • DagMLReplayExecution.run_id
    • DagMLReplayExecution.warnings
  • DagMLTrainingCompiler
    • DagMLTrainingCompiler.compile_fit()
  • DagMLTrainingExecution
    • DagMLTrainingExecution.bundle_id
    • DagMLTrainingExecution.data_envelopes
    • DagMLTrainingExecution.diagnostics
    • DagMLTrainingExecution.methods_inputs
    • DagMLTrainingExecution.methods_library_path
    • DagMLTrainingExecution.op_callback
    • DagMLTrainingExecution.outcome_id
    • DagMLTrainingExecution.relations
    • DagMLTrainingExecution.request
    • DagMLTrainingExecution.run_id
    • DagMLTrainingExecution.training_influence
    • DagMLTrainingExecution.warnings
• nirs4all.pipeline.dagml.exclude module
  • FoldLocalExclusion
    • FoldLocalExclusion.apply()
    • FoldLocalExclusion.cascade_to_augmented
    • FoldLocalExclusion.children_by_origin
    • FoldLocalExclusion.steps
• nirs4all.pipeline.dagml.experimental_units module
  • apply_experimental_unit_contract()
  • experimental_unit_contract()
  • experimental_unit_metadata()
  • native_fit_weights()
  • require_sample_weight_support()
  • require_weighted_context()
  • weighted_fit_kwargs()
• nirs4all.pipeline.dagml.finetune_lowering module
  • lower_deterministic_finetune_params_to_generators()
  • reject_native_training_param_overrides()
• nirs4all.pipeline.dagml.fit_identity module
  • DagMLCalibrationIdentityFrame
    • DagMLCalibrationIdentityFrame.data_content_fingerprint
    • DagMLCalibrationIdentityFrame.explicit_sample_ids
    • DagMLCalibrationIdentityFrame.fingerprint
    • DagMLCalibrationIdentityFrame.group_by_sample_id()
    • DagMLCalibrationIdentityFrame.groups
    • DagMLCalibrationIdentityFrame.metadata_by_sample_id()
    • DagMLCalibrationIdentityFrame.metadata_rows
    • DagMLCalibrationIdentityFrame.n_samples
    • DagMLCalibrationIdentityFrame.sample_ids
    • DagMLCalibrationIdentityFrame.target_content_fingerprint
  • feature_content_fingerprint()
  • normalize_calibration_identity()
  • normalize_fit_identity()
  • normalize_predict_identity()
  • target_content_fingerprint()
• nirs4all.pipeline.dagml.fixed_cohort_views module
  • FixedCohortTaskViews
    • FixedCohortTaskViews.consumed_data_views()
    • FixedCohortTaskViews.feature_blocks()
    • FixedCohortTaskViews.take()
  • FixedCohortViewStore
    • FixedCohortViewStore.__call__()
    • FixedCohortViewStore.bind_task()
• nirs4all.pipeline.dagml.folds module
  • FoldLocalFolds
  • lower_fold_file_holdout()
• nirs4all.pipeline.dagml.framework_estimator module
  • DagMLFrameworkEstimator
    • DagMLFrameworkEstimator.fit()
    • DagMLFrameworkEstimator.get_params()
    • DagMLFrameworkEstimator.predict()
    • DagMLFrameworkEstimator.set_params()
  • framework_model_params()
• nirs4all.pipeline.dagml.full_train module
  • NoSplitEvaluationWarning
  • run_by_source_auto_full_train()
  • run_full_train()
• nirs4all.pipeline.dagml.full_train_variants module
  • expand_full_train_variants()
• nirs4all.pipeline.dagml.general_archive module
  • copy_general_archive()
  • general_archive_manifest()
  • predict_general_archive()
  • predict_general_result()
• nirs4all.pipeline.dagml.general_replay module
  • predict_captured_artifact()
• nirs4all.pipeline.dagml.general_workspace module
  • load_general_workspace_chain()
  • predict_general_workspace_chain()
• nirs4all.pipeline.dagml.generated_hpo_subprocess module
  • run_generated_hpo_subprocess()
• nirs4all.pipeline.dagml.generated_hpo_worker module
  • execute()
  • main()
• nirs4all.pipeline.dagml.generated_subprocess module
  • run_generated_subprocess()
• nirs4all.pipeline.dagml.generated_views module
  • qualified_generated_by_source_pipeline()
  • qualified_generated_model_pipeline()
• nirs4all.pipeline.dagml.generated_worker module
  • execute()
  • main()
• nirs4all.pipeline.dagml.host_artifacts module
  • file_fingerprint()
  • hydrate_host_artifacts()
  • stage_host_artifacts()
  • verify_host_artifacts()
• nirs4all.pipeline.dagml.host_finetune module
  • attach_host_finetune_splitter()
  • is_host_finetune()
  • run_scoped_finetune()
  • scoped_inner_cv()
  • split_trial_fit_overrides()
  • validate_host_finetune()
• nirs4all.pipeline.dagml.host_hpo_candidate module
  • HostHpoCandidate
    • HostHpoCandidate.call()
    • HostHpoCandidate.close()
• nirs4all.pipeline.dagml.host_hpo_candidate_worker module
  • execute()
  • main()
• nirs4all.pipeline.dagml.host_search_checkpoint module
  • HostSearchOptimizer
    • HostSearchOptimizer.checkpoint()
    • HostSearchOptimizer.close()
• nirs4all.pipeline.dagml.identity module
  • SampleIdentity
    • SampleIdentity.augmented
    • SampleIdentity.observation_id
    • SampleIdentity.origin_int
    • SampleIdentity.sample_id
    • SampleIdentity.sample_int
  • validate_data_id()
• nirs4all.pipeline.dagml.in_process_runner module
  • run_cv_refit_bundle()
  • run_cv_refit_bundle_router()
• nirs4all.pipeline.dagml.initial_refit_replay module
  • predict_initial_refit_output()
• nirs4all.pipeline.dagml.late_tuning module
  • LateFusionTuningRecipe
    • LateFusionTuningRecipe.bindings
    • LateFusionTuningRecipe.branches
    • LateFusionTuningRecipe.has_local_finetune
    • LateFusionTuningRecipe.layout
    • LateFusionTuningRecipe.meta
    • LateFusionTuningRecipe.operators
    • LateFusionTuningRecipe.pipeline
    • LateFusionTuningRecipe.selected_pipeline()
  • prepare_late_tuning()
  • validate_nested_local_finetune()
• nirs4all.pipeline.dagml.methods_classification module
  • checked_vocabulary()
  • classification_vocabulary()
  • classifier_controller_for_graph()
  • classifier_head()
  • classifier_recipe()
  • decode_labels()
  • encode_labels()
  • fit_declared_methods_classifier()
  • graph_vocabulary()
• nirs4all.pipeline.dagml.methods_lane module
  • lane_record()
  • merge_lane_records()
  • native_methods_refusal()
  • native_params()
  • record_execution_lane()
  • result_lane_record()
  • run_cv_refit_lane()
• nirs4all.pipeline.dagml.methods_multimodal module
  • MethodsMultimodalRunResult
    • MethodsMultimodalRunResult.classes_
    • MethodsMultimodalRunResult.classification
    • MethodsMultimodalRunResult.classification_probability_blocks
    • MethodsMultimodalRunResult.close()
    • MethodsMultimodalRunResult.export()
    • MethodsMultimodalRunResult.methods_multimodal_search_request
    • MethodsMultimodalRunResult.methods_multimodal_tuning_evidence
    • MethodsMultimodalRunResult.structural_tuning_training_outcome
    • MethodsMultimodalRunResult.structural_tuning_training_request
  • bind_methods_dsl()
  • controller_for_graph()
  • controller_sources()
  • execute_methods_training()
  • fit_declared_methods_model()
  • is_methods_multimodal_package()
  • methods_input_blocks()
  • methods_model_in_pipeline()
  • predict_methods_multimodal_archive()
  • recipe_from_estimator()
  • run_methods_multimodal()
  • source_schemas_from_cohort()
  • validate_training_profile()
• nirs4all.pipeline.dagml.methods_replay module
  • MethodsN4mmReplayCallbacks
    • MethodsN4mmReplayCallbacks.active_handle_count
    • MethodsN4mmReplayCallbacks.artifact_callback()
    • MethodsN4mmReplayCallbacks.close()
    • MethodsN4mmReplayCallbacks.op_callback()
  • MethodsPortableReplayError
• nirs4all.pipeline.dagml.methods_runtime module
  • resolve_methods_library_path()
• nirs4all.pipeline.dagml.multimodal_contracts module
  • archive_metadata()
  • bind_dense_concat_input_contract()
  • bind_input_contract()
  • emit_late_partial_refit_origin()
  • generated_input_schema_sha256()
  • generated_prediction_contract()
  • late_partial_archive_contract()
  • late_partial_stack_contract()
  • named_archive_artifact()
  • stacking_source_presence_contract()
  • validate_dependencies()
  • validate_input_contract()
  • validate_late_partial_archive_contract()
  • validate_late_partial_refit_origin()
  • validate_late_partial_stack()
  • validate_named_archive_contract()
  • validate_stacking_archive_contract()
• nirs4all.pipeline.dagml.multimodal_tuning module
  • MultimodalTuningStopped
  • run_multimodal_tuning()
• nirs4all.pipeline.dagml.na_policy module
  • ReplaceMissingValues
    • ReplaceMissingValues.fit()
    • ReplaceMissingValues.transform()
• nirs4all.pipeline.dagml.named_stacking module
  • NamedStackingResult
    • NamedStackingResult.export()
    • NamedStackingResult.export_model()
  • project_named_stacking()
• nirs4all.pipeline.dagml.named_torch module
  • is_named_torch_model()
  • named_learned_state_sha256()
  • named_task_seed()
  • named_torch_estimator()
  • named_torch_task_scope()
  • prepare_named_torch_pipeline()
• nirs4all.pipeline.dagml.named_torch_estimator module
• nirs4all.pipeline.dagml.native_archive_replay module
  • NativeArchiveConformalInterval
    • NativeArchiveConformalInterval.calibration_fingerprint
    • NativeArchiveConformalInterval.coverage
    • NativeArchiveConformalInterval.lower
    • NativeArchiveConformalInterval.qhat
    • NativeArchiveConformalInterval.upper
  • NativeArchivePrediction
    • NativeArchivePrediction.conformal_guarantee_status
    • NativeArchivePrediction.conformal_presentation
    • NativeArchivePrediction.intervals
    • NativeArchivePrediction.sample_ids
    • NativeArchivePrediction.values
  • NativeArchiveReplayError
  • predict_methods_archive_v2_raw()
  • predict_methods_archive_v2_raw_result()
  • project_methods_archive_v2_conformal_presentation()
  • replay_methods_archive_v2()
  • validate_methods_archive_v2()
  • write_methods_archive_v2()
• nirs4all.pipeline.dagml.native_client module
  • DagMLNativeCapabilities
    • DagMLNativeCapabilities.contract_manifest
    • DagMLNativeCapabilities.loaded_predictor_replay
    • DagMLNativeCapabilities.package_version
    • DagMLNativeCapabilities.training
  • DagMLNativeClient
    • DagMLNativeClient.capabilities()
    • DagMLNativeClient.execute_methods_cv_refit_terminal_predict()
    • DagMLNativeClient.execute_methods_portable_full_refit()
    • DagMLNativeClient.execute_methods_training()
    • DagMLNativeClient.execute_training()
    • DagMLNativeClient.module_name
    • DagMLNativeClient.replay_loaded_methods_portable_refit_package_v3()
    • DagMLNativeClient.replay_loaded_methods_predictor_package()
    • DagMLNativeClient.replay_loaded_predictor_package()
    • DagMLNativeClient.select_portable_output()
  • DagMLNativeCoverageError
  • native_client()
• nirs4all.pipeline.dagml.native_conformal_calibration module
  • NativeConformalCalibrationError
  • NativeConformalCalibrationReplay
    • NativeConformalCalibrationReplay.binding_id
    • NativeConformalCalibrationReplay.calibration_relations
    • NativeConformalCalibrationReplay.execution
    • NativeConformalCalibrationReplay.truth
  • compile_methods_conformal_calibration_replay()
• nirs4all.pipeline.dagml.native_pls_fold_hpo module
  • NativePlsFoldPlan
    • NativePlsFoldPlan.inner_fold_sets
    • NativePlsFoldPlan.outer_fold_set
    • NativePlsFoldPlan.pipeline
    • NativePlsFoldPlan.refit_inner_fold_set
  • normalize_fold_resume_package()
  • prepare_native_pls_fold_plan()
  • validate_fold_splitter()
• nirs4all.pipeline.dagml.native_pls_phase_controls module
  • NativePlsPhaseControls
    • NativePlsPhaseControls.base_params
    • NativePlsPhaseControls.hpo
    • NativePlsPhaseControls.hpo_scope
    • NativePlsPhaseControls.pipeline
    • NativePlsPhaseControls.refit_params
    • NativePlsPhaseControls.search_axes
    • NativePlsPhaseControls.train_params
  • attach_native_pls_phase_controls()
  • normalize_native_pls_phase_controls()
• nirs4all.pipeline.dagml.native_pls_phase_replay module
  • is_native_pls_phase_package()
  • predict_native_pls_phase_archive()
  • read_native_pls_phase_archive()
• nirs4all.pipeline.dagml.native_results module
  • native_results_enabled()
  • read_native_results()
  • separation_replay_manifest()
  • write_native_results()
• nirs4all.pipeline.dagml.native_vote module
  • capture_vote_evidence()
  • collect_vote_evidence()
  • project_vote_evidence()
• nirs4all.pipeline.dagml.node_runner module
  • capture_torch_topology()
  • emit_named_refit_origin()
  • run_meta_model_node()
  • run_model_node()
• nirs4all.pipeline.dagml.operator_parameters module
  • decode_constructor_value()
  • encode_constructor_value()
• nirs4all.pipeline.dagml.operator_routing module
  • route_operator()
• nirs4all.pipeline.dagml.pipeline_objective module
  • PipelineObjective
    • PipelineObjective.evaluate()
    • PipelineObjective.refit_best()
  • PipelineObjectiveResult
    • PipelineObjectiveResult.diagnostics
    • PipelineObjectiveResult.direction
    • PipelineObjectiveResult.metric
    • PipelineObjectiveResult.params
    • PipelineObjectiveResult.score
    • PipelineObjectiveResult.trial_index
    • PipelineObjectiveResult.tuning_fingerprint
  • apply_trial_parameter_patch()
  • make_conformal_prediction_score_extractor()
  • make_prediction_score_extractor()
• nirs4all.pipeline.dagml.pipeline_objective_compiler module
  • CompiledPipelineObjective
    • CompiledPipelineObjective.X
    • CompiledPipelineObjective.evaluate()
    • CompiledPipelineObjective.groups
    • CompiledPipelineObjective.metadata
    • CompiledPipelineObjective.objective
    • CompiledPipelineObjective.parameter_patches()
    • CompiledPipelineObjective.run_tuning()
    • CompiledPipelineObjective.sample_ids
    • CompiledPipelineObjective.search_space
    • CompiledPipelineObjective.y
  • compile_pipeline_objective()
  • run_single_estimator_tuning_to_run_result()
• nirs4all.pipeline.dagml.process_adapter module
  • describe()
  • main()
  • run_jsonl_loop()
• nirs4all.pipeline.dagml.public_batch module
  • run_dagml_public()
• nirs4all.pipeline.dagml.public_normalization module
• nirs4all.pipeline.dagml.raw_replay_lowerer module
  • RawArrayMethodsPortableRefitReplayCompiler
    • RawArrayMethodsPortableRefitReplayCompiler.compile_replay()
    • RawArrayMethodsPortableRefitReplayCompiler.dagml_module
    • RawArrayMethodsPortableRefitReplayCompiler.methods_library_path
    • RawArrayMethodsPortableRefitReplayCompiler.outcome_id
    • RawArrayMethodsPortableRefitReplayCompiler.package
    • RawArrayMethodsPortableRefitReplayCompiler.request_id
    • RawArrayMethodsPortableRefitReplayCompiler.run_id
  • RawArrayMethodsReplayError
  • validate_native_methods_package()
  • validate_native_methods_refit_package_v3()
• nirs4all.pipeline.dagml.raw_training_lowerer module
  • RawArrayDagMLTrainingCompiler
    • RawArrayDagMLTrainingCompiler.additional_diagnostics
    • RawArrayDagMLTrainingCompiler.bundle_id
    • RawArrayDagMLTrainingCompiler.compile_fit()
    • RawArrayDagMLTrainingCompiler.dagml_module
    • RawArrayDagMLTrainingCompiler.local_implementations
    • RawArrayDagMLTrainingCompiler.methods_hpo_operation
    • RawArrayDagMLTrainingCompiler.methods_library_path
    • RawArrayDagMLTrainingCompiler.outcome_id
    • RawArrayDagMLTrainingCompiler.plan_id
    • RawArrayDagMLTrainingCompiler.request_id
    • RawArrayDagMLTrainingCompiler.run_id
    • RawArrayDagMLTrainingCompiler.seed
    • RawArrayDagMLTrainingCompiler.selection_metric
    • RawArrayDagMLTrainingCompiler.selection_objective
    • RawArrayDagMLTrainingCompiler.training_losses
  • lower_raw_array_training_contracts()
  • raw_arrays_to_spectro_dataset()
• nirs4all.pipeline.dagml.residual_run module
  • ResidualImplicitCvWarning
  • residual_operator()
  • run_residual_model()
• nirs4all.pipeline.dagml.resolver module
• nirs4all.pipeline.dagml.resources module
  • DagMLExecutionResources
    • DagMLExecutionResources.cpu_threads
    • DagMLExecutionResources.gpu_devices
    • DagMLExecutionResources.to_contract()
  • bind_execution_resources()
  • normalize_execution_resources()
  • reset_execution_resources()
• nirs4all.pipeline.dagml.result module
• nirs4all.pipeline.dagml.rt module
  • RtResult
    • RtResult.artifacts
    • RtResult.diagnostics
    • RtResult.from_native_dir()
    • RtResult.from_run_result()
    • RtResult.manifest
    • RtResult.plan_id
    • RtResult.predictions
    • RtResult.reports
    • RtResult.run_id
    • RtResult.schema_version
    • RtResult.selection
    • RtResult.to_dict()
  • RtRunRequest
    • RtRunRequest.cv
    • RtRunRequest.dataset_ref
    • RtRunRequest.execution_backend
    • RtRunRequest.options
    • RtRunRequest.pipeline_dsl
    • RtRunRequest.to_dict()
• nirs4all.pipeline.dagml.run_backend module
  • preflight_dagml_backend()
  • run_via_dagml()
• nirs4all.pipeline.dagml.run_paths module
  • DuplicationBranchMergeTransformer
    • DuplicationBranchMergeTransformer.fit()
    • DuplicationBranchMergeTransformer.fit_transform()
    • DuplicationBranchMergeTransformer.get_params()
    • DuplicationBranchMergeTransformer.set_params()
    • DuplicationBranchMergeTransformer.transform()
  • DuplicationFusionEstimator
    • DuplicationFusionEstimator.predict()
• nirs4all.pipeline.dagml.sequential_models module
  • sequential_model_pipelines()
  • share_model_folds()
• nirs4all.pipeline.dagml.source_missing module
  • append_source_presence()
  • build_prediction_availability()
  • checked_prediction_features()
  • checked_source_presence()
  • checked_target_validity()
  • predict_present_rows()
  • prediction_source_presence_metadata()
• nirs4all.pipeline.dagml.source_stacking module
  • source_stacking_missing_policy()
• nirs4all.pipeline.dagml.steps module
• nirs4all.pipeline.dagml.structural_classification module
  • classification_output()
  • declared_classifier_topologies()
  • is_classification_choice()
  • lower_classifier_choices()
  • prepare_classification_structure()
  • run_fixed_classifier()
  • train_selected_classification()
  • validate_count_space()
• nirs4all.pipeline.dagml.structural_multimodal module
  • is_methods_model_choice()
  • lower_typed_choices()
  • prepare_typed_structure()
  • train_selected_typed_structure()
  • validate_alpha_space()
  • validate_typed_profile()
• nirs4all.pipeline.dagml.structural_sources module
  • build_source_selection_step()
  • validate_source_selection_alternatives()
• nirs4all.pipeline.dagml.structural_topology module
  • declared_topologies()
  • is_topology_choice()
  • lower_topology_choices()
  • prepare_topology_structure()
  • train_selected_topology()
• nirs4all.pipeline.dagml.structural_torch module
  • declared_torch_topologies()
  • is_torch_choice()
  • lower_torch_choices()
  • prepare_torch_structure()
  • torch_declaration()
  • validate_torch_space()
• nirs4all.pipeline.dagml.structural_tuning module
  • is_structural_tuning_pipeline()
  • run_structural_tuning()
  • validate_structural_profile()
• nirs4all.pipeline.dagml.target_capture module
  • CapturedTargetTransform
    • CapturedTargetTransform.classes_
    • CapturedTargetTransform.decode()
    • CapturedTargetTransform.fit()
    • CapturedTargetTransform.fit_transform()
    • CapturedTargetTransform.inverse_numeric()
    • CapturedTargetTransform.inverse_transform()
    • CapturedTargetTransform.transform()
  • captured_target_transform()
• nirs4all.pipeline.dagml.terminal_predict_lowerer module
  • StrictMethodsTerminalPredictionExecution
    • StrictMethodsTerminalPredictionExecution.bundle_id
    • StrictMethodsTerminalPredictionExecution.data_envelopes
    • StrictMethodsTerminalPredictionExecution.fit_identity_frame
    • StrictMethodsTerminalPredictionExecution.methods_inputs
    • StrictMethodsTerminalPredictionExecution.n_features
    • StrictMethodsTerminalPredictionExecution.outcome_id
    • StrictMethodsTerminalPredictionExecution.package_id
    • StrictMethodsTerminalPredictionExecution.predict_envelope
    • StrictMethodsTerminalPredictionExecution.predict_identity_frame
    • StrictMethodsTerminalPredictionExecution.predict_input
    • StrictMethodsTerminalPredictionExecution.relations
    • StrictMethodsTerminalPredictionExecution.request
    • StrictMethodsTerminalPredictionExecution.run_id
    • StrictMethodsTerminalPredictionExecution.terminal_node_id
    • StrictMethodsTerminalPredictionExecution.terminal_port
    • StrictMethodsTerminalPredictionExecution.training_influence
  • lower_strict_methods_terminal_prediction()
• nirs4all.pipeline.dagml.torch_estimator module
  • prepare_torch_runtime()
• nirs4all.pipeline.dagml.torch_topology_replay module
  • CapturedTorchTopology
    • CapturedTorchTopology.predict()
    • CapturedTorchTopology.validate()
  • capture_torch_topology()
  • emit_refit_attestation()
  • learned_state_sha256()
  • operator_name()
  • predict_torch_task()
  • replay_torch_topology()
  • selected_torch_features()
  • torch_task_scope()
  • validate_refit_attestation()
• nirs4all.pipeline.dagml.training_compiler module
  • DagMLPreparedTrainingContracts
    • DagMLPreparedTrainingContracts.bundle_id
    • DagMLPreparedTrainingContracts.data_envelopes
    • DagMLPreparedTrainingContracts.diagnostics
    • DagMLPreparedTrainingContracts.methods_inputs
    • DagMLPreparedTrainingContracts.methods_library_path
    • DagMLPreparedTrainingContracts.op_callback
    • DagMLPreparedTrainingContracts.outcome_id
    • DagMLPreparedTrainingContracts.relations
    • DagMLPreparedTrainingContracts.request
    • DagMLPreparedTrainingContracts.run_id
    • DagMLPreparedTrainingContracts.training_influence
    • DagMLPreparedTrainingContracts.warnings
  • DagMLTrainingContractFactoryCompiler
    • DagMLTrainingContractFactoryCompiler.additional_diagnostics
    • DagMLTrainingContractFactoryCompiler.compile_fit()
    • DagMLTrainingContractFactoryCompiler.factory
    • DagMLTrainingContractFactoryCompiler.include_fit_identity_diagnostics
  • DagMLTrainingRequestCompiler
    • DagMLTrainingRequestCompiler.additional_diagnostics
    • DagMLTrainingRequestCompiler.compile_fit()
    • DagMLTrainingRequestCompiler.contracts
    • DagMLTrainingRequestCompiler.dagml_module
    • DagMLTrainingRequestCompiler.include_fit_identity_diagnostics
  • DagMLTrainingRequestContracts
    • DagMLTrainingRequestContracts.bundle_id
    • DagMLTrainingRequestContracts.data_envelopes
    • DagMLTrainingRequestContracts.diagnostics
    • DagMLTrainingRequestContracts.methods_inputs
    • DagMLTrainingRequestContracts.methods_library_path
    • DagMLTrainingRequestContracts.op_callback
    • DagMLTrainingRequestContracts.outcome_id
    • DagMLTrainingRequestContracts.relations
    • DagMLTrainingRequestContracts.request_spec
    • DagMLTrainingRequestContracts.run_id
    • DagMLTrainingRequestContracts.to_prepared()
    • DagMLTrainingRequestContracts.training_influence
    • DagMLTrainingRequestContracts.warnings
  • PreparedDagMLTrainingCompiler
    • PreparedDagMLTrainingCompiler.additional_diagnostics
    • PreparedDagMLTrainingCompiler.compile_fit()
    • PreparedDagMLTrainingCompiler.contracts
    • PreparedDagMLTrainingCompiler.include_fit_identity_diagnostics
  • compile_prepared_training_contracts()
• nirs4all.pipeline.dagml.training_contracts module
  • tcv1_fingerprint_without()
  • training_data_identity_from_binding()
  • validate_training_request_with_dagml()
• nirs4all.pipeline.dagml.training_controls module
  • apply_model_training_controls()
  • apply_pipeline_folds_to_model()
  • cv_weight_transfer_request()
  • effective_training_controls()
  • report_model_training_controls()
• nirs4all.pipeline.dagml.tuning_adapters module
  • N4MPipelineObjectiveAdapter
    • N4MPipelineObjectiveAdapter.optimize()
  • ObjectiveTuningRunResult
    • ObjectiveTuningRunResult.refit_estimator
    • ObjectiveTuningRunResult.tuning_id
    • ObjectiveTuningRunResult.tuning_result
  • OptunaPipelineObjectiveAdapter
    • OptunaPipelineObjectiveAdapter.optimize()
  • TuningAdapterUnavailable
  • optimize_pipeline_objective()
  • run_pipeline_objective_tuning()
• nirs4all.pipeline.dagml.tuning_contracts module
  • DagMLTuningNotImplementedError
  • get_tuning_summary_schema()
• nirs4all.pipeline.dagml.tuning_projection module
  • project_objective_tuning_to_run_result()
• nirs4all.pipeline.dagml.typed_parallel module
  • closed_candidate_audit()
• nirs4all.pipeline.dagml.worker_environment module
• nirs4all.pipeline.dagml.workspace_projection module
  • publish_workspace_result()