nirs4all.pipeline package

Subpackages

• nirs4all.pipeline.analysis package
  • Submodules
    • nirs4all.pipeline.analysis.model_diagnostics module
      • BiasVarianceDecomposition
      • bias_variance_decomposition()
      • estimate_train_size()
      • learning_curve_points()
      • robustness_axes()
    • nirs4all.pipeline.analysis.shape_inference module
      • DIMENSION_BOUND_PARAMS
      • infer_output_shape()
    • nirs4all.pipeline.analysis.splitter_config module
      • SplitterConfig
      • extract_splitter_config()
      • is_splitter_reference()
      • parse_expanded_config_steps()
    • nirs4all.pipeline.analysis.topology module
      • ModelNodeInfo
      • PipelineTopology
      • analyze_topology()
• nirs4all.pipeline.bundle package
  • Submodules
    • nirs4all.pipeline.bundle.constants module
    • nirs4all.pipeline.bundle.generator module
      • BundleFormat
      • BundleGenerator
      • write_single_model_bundle()
    • nirs4all.pipeline.bundle.loader module
      • BundleArtifactLoadError
      • BundleArtifactProvider
      • BundleLoader
      • BundleMetadata
      • load_bundle()
• nirs4all.pipeline.config package
  • Submodules
    • nirs4all.pipeline.config.component_serialization module
      • serialize_component()
    • nirs4all.pipeline.config.context module
      • BestChainEntry
      • DataSelector
      • LoaderArtifactProvider
      • PipelineState
      • StepMetadata
    • nirs4all.pipeline.config.generator module
      • CartesianStrategy
      • ChainStrategy
      • ExpansionStrategy
      • ExpansionTreeNode
      • GridStrategy
      • LogRangeStrategy
      • OrStrategy
      • RangeStrategy
      • SampleStrategy
      • ValidationError
      • ValidationResult
      • ValidationSeverity
      • ZipStrategy
      • apply_all_constraints()
      • apply_exclude_constraint()
      • apply_mutex_constraint()
      • apply_requires_constraint()
      • batch_iter()
      • clear_presets()
      • count_combinations()
      • diff_configs()
      • expand_spec_iter()
      • expand_spec_with_choices()
      • export_presets()
      • extract_base_node()
      • extract_constraints()
      • extract_metadata()
      • extract_modifiers()
      • extract_or_choices()
      • extract_range_spec()
      • extract_tags()
      • format_config_table()
      • get_expansion_tree()
      • get_preset()
      • get_preset_info()
      • get_strategy()
      • has_cartesian_keyword()
      • has_chain_keyword()
      • has_grid_keyword()
      • has_log_range_keyword()
      • has_or_keyword()
      • has_preset()
      • has_range_keyword()
      • has_sample_keyword()
      • has_zip_keyword()
      • import_presets()
      • is_preset_reference()
      • is_pure_cartesian_node()
      • is_pure_chain_node()
      • is_pure_grid_node()
      • is_pure_log_range_node()
      • is_pure_or_node()
      • is_pure_range_node()
      • is_pure_sample_node()
      • is_pure_zip_node()
      • iter_with_progress()
      • list_presets()
      • parse_constraints()
      • print_expansion_tree()
      • register_builtin_presets()
      • register_preset()
      • register_strategy()
      • resolve_preset()
      • resolve_presets_recursive()
      • sample_with_seed()
      • summarize_configs()
      • to_dataframe()
      • unregister_preset()
      • validate_config()
      • validate_constraints()
      • validate_expanded_configs()
      • validate_spec()
    • nirs4all.pipeline.config.pipeline_config module
    • nirs4all.pipeline.config.portable_method_specs module
      • PortableMethodSpec
    • nirs4all.pipeline.config.refit_params module
      • resolve_refit_params()
• nirs4all.pipeline.dagml package
  • Submodules
    • nirs4all.pipeline.dagml.attested_by_source module
      • bind_source_output_contract()
      • execute_attested_by_source_cv()
      • validate_source_archive_before_model()
      • validate_source_package_bindings()
    • nirs4all.pipeline.dagml.auto_transfer module
      • DagMLAutoTransferPreprocessor
    • nirs4all.pipeline.dagml.autogluon_estimator module
      • DagMLAutoGluonEstimator
      • autogluon_step_estimator()
    • nirs4all.pipeline.dagml.cancellation module
      • DagRunCancelled
      • check_cancellation()
    • nirs4all.pipeline.dagml.chart_projection module
      • render_run_charts()
      • validate_chart_projection()
    • nirs4all.pipeline.dagml.cli_runner module
      • assemble_constrained_cv_refit_dsl()
      • assemble_cv_refit_dsl()
      • data_bindings_for()
      • data_bindings_for_fitted_x_chain()
      • data_bindings_for_nodes()
      • model_node_id()
      • needs_dynamic_feature_axis()
      • run_cv_refit_bundle()
      • run_refit_phase_cli()
      • split_invocation_for()
      • write_launcher_shim()
    • nirs4all.pipeline.dagml.conformal_contracts module
      • CalibratedPredictionBlock
      • CalibratedRunResult
      • ConformalCalibrationArtifact
      • ConformalCalibrationCohortManifest
      • ConformalCalibrationCohortRow
      • ConformalCalibrationSpec
      • ConformalIntervalBlock
      • ConformalMetricSet
      • SplitConformalCalibrator
      • apply_conformal_artifact_to_predictions()
      • apply_split_conformal_calibrator()
      • calibrate_replayed_predictions()
      • conformal_finite_sample_quantile()
      • conformal_guarantee_status()
      • evaluate_conformal_prediction()
      • fit_conformal_calibration_artifact()
      • fit_split_absolute_residual_calibrator()
      • normalize_conformal_calibration_cohort()
      • normalize_coverages()
      • parse_conformal_calibration_spec()
    • nirs4all.pipeline.dagml.conformal_store module
      • ConformalStoreManifest
      • attach_conformal_result_to_bundle()
      • export_conformal_result_bundle()
      • load_conformal_result_archive()
      • load_conformal_result_bundle()
      • load_conformal_result_store()
      • save_conformal_result_store()
    • nirs4all.pipeline.dagml.core_archive_replay module
      • CoreArchiveDependencyError
      • CoreArchiveReplayError
      • CoreArchiveValidation
      • detect_core_archive_version()
      • predict_core_methods_archive_v2()
      • validate_core_methods_archive_v2()
    • nirs4all.pipeline.dagml.cv_weight_transfer module
      • CVWeightTransferStore
      • TransferIdentity
      • TransferInputContract
      • WarmStartRequest
      • parse_warm_start_request()
      • validate_sgd_profile()
      • validate_transfer_input()
    • nirs4all.pipeline.dagml.data_provider module
      • prepare_data_provider()
    • nirs4all.pipeline.dagml.dataset module
    • nirs4all.pipeline.dagml.detect module
    • nirs4all.pipeline.dagml.envelope module
      • build_envelope()
      • num_targets()
      • sample_relations()
      • source_ids()
      • source_order()
      • supports_terminal_prediction_relation_authority()
      • target_names()
    • nirs4all.pipeline.dagml.errors module
      • DagMlExportRefusal
      • DagMlMigrationRequired
      • DagMlPipelinePreflightRequired
      • DagMlStatefulConcatTransformMigrationRequired
      • DagMlUnavailable
      • DagMlUnsupported
    • nirs4all.pipeline.dagml.estimator module
      • DagMLFitIdentityFrame
      • DagMLPipelineEstimator
      • DagMLPredictIdentityFrame
      • DagMLReplayCompiler
      • DagMLReplayExecution
      • DagMLTrainingCompiler
      • DagMLTrainingExecution
    • nirs4all.pipeline.dagml.exclude module
      • FoldLocalExclusion
    • nirs4all.pipeline.dagml.experimental_units module
      • apply_experimental_unit_contract()
      • experimental_unit_contract()
      • experimental_unit_metadata()
      • native_fit_weights()
      • require_sample_weight_support()
      • require_weighted_context()
      • weighted_fit_kwargs()
    • nirs4all.pipeline.dagml.finetune_lowering module
      • lower_deterministic_finetune_params_to_generators()
      • reject_native_training_param_overrides()
    • nirs4all.pipeline.dagml.fit_identity module
      • DagMLCalibrationIdentityFrame
      • feature_content_fingerprint()
      • normalize_calibration_identity()
      • normalize_fit_identity()
      • normalize_predict_identity()
      • target_content_fingerprint()
    • nirs4all.pipeline.dagml.fixed_cohort_views module
      • FixedCohortTaskViews
      • FixedCohortViewStore
    • nirs4all.pipeline.dagml.folds module
      • FoldLocalFolds
      • lower_fold_file_holdout()
    • nirs4all.pipeline.dagml.framework_estimator module
      • DagMLFrameworkEstimator
      • framework_model_params()
    • nirs4all.pipeline.dagml.full_train module
      • NoSplitEvaluationWarning
      • run_by_source_auto_full_train()
      • run_full_train()
    • nirs4all.pipeline.dagml.full_train_variants module
      • expand_full_train_variants()
    • nirs4all.pipeline.dagml.general_archive module
      • copy_general_archive()
      • general_archive_manifest()
      • predict_general_archive()
      • predict_general_result()
    • nirs4all.pipeline.dagml.general_replay module
      • predict_captured_artifact()
    • nirs4all.pipeline.dagml.general_workspace module
      • load_general_workspace_chain()
      • predict_general_workspace_chain()
    • nirs4all.pipeline.dagml.generated_hpo_subprocess module
      • run_generated_hpo_subprocess()
    • nirs4all.pipeline.dagml.generated_hpo_worker module
      • execute()
      • main()
    • nirs4all.pipeline.dagml.generated_subprocess module
      • run_generated_subprocess()
    • nirs4all.pipeline.dagml.generated_views module
      • qualified_generated_by_source_pipeline()
      • qualified_generated_model_pipeline()
    • nirs4all.pipeline.dagml.generated_worker module
      • execute()
      • main()
    • nirs4all.pipeline.dagml.host_artifacts module
      • file_fingerprint()
      • hydrate_host_artifacts()
      • stage_host_artifacts()
      • verify_host_artifacts()
    • nirs4all.pipeline.dagml.host_finetune module
      • attach_host_finetune_splitter()
      • is_host_finetune()
      • run_scoped_finetune()
      • scoped_inner_cv()
      • split_trial_fit_overrides()
      • validate_host_finetune()
    • nirs4all.pipeline.dagml.host_hpo_candidate module
      • HostHpoCandidate
    • nirs4all.pipeline.dagml.host_hpo_candidate_worker module
      • execute()
      • main()
    • nirs4all.pipeline.dagml.host_search_checkpoint module
      • HostSearchOptimizer
    • nirs4all.pipeline.dagml.identity module
      • SampleIdentity
      • validate_data_id()
    • nirs4all.pipeline.dagml.in_process_runner module
      • run_cv_refit_bundle()
      • run_cv_refit_bundle_router()
    • nirs4all.pipeline.dagml.initial_refit_replay module
      • predict_initial_refit_output()
    • nirs4all.pipeline.dagml.late_tuning module
      • LateFusionTuningRecipe
      • prepare_late_tuning()
      • validate_nested_local_finetune()
    • nirs4all.pipeline.dagml.methods_classification module
      • checked_vocabulary()
      • classification_vocabulary()
      • classifier_controller_for_graph()
      • classifier_head()
      • classifier_recipe()
      • decode_labels()
      • encode_labels()
      • fit_declared_methods_classifier()
      • graph_vocabulary()
    • nirs4all.pipeline.dagml.methods_lane module
      • lane_record()
      • merge_lane_records()
      • native_methods_refusal()
      • native_params()
      • record_execution_lane()
      • result_lane_record()
      • run_cv_refit_lane()
    • nirs4all.pipeline.dagml.methods_multimodal module
      • MethodsMultimodalRunResult
      • bind_methods_dsl()
      • controller_for_graph()
      • controller_sources()
      • execute_methods_training()
      • fit_declared_methods_model()
      • is_methods_multimodal_package()
      • methods_input_blocks()
      • methods_model_in_pipeline()
      • predict_methods_multimodal_archive()
      • recipe_from_estimator()
      • run_methods_multimodal()
      • source_schemas_from_cohort()
      • validate_training_profile()
    • nirs4all.pipeline.dagml.methods_replay module
      • MethodsN4mmReplayCallbacks
      • MethodsPortableReplayError
    • nirs4all.pipeline.dagml.methods_runtime module
      • resolve_methods_library_path()
    • nirs4all.pipeline.dagml.multimodal_contracts module
      • archive_metadata()
      • bind_dense_concat_input_contract()
      • bind_input_contract()
      • emit_late_partial_refit_origin()
      • generated_input_schema_sha256()
      • generated_prediction_contract()
      • late_partial_archive_contract()
      • late_partial_stack_contract()
      • named_archive_artifact()
      • stacking_source_presence_contract()
      • validate_dependencies()
      • validate_input_contract()
      • validate_late_partial_archive_contract()
      • validate_late_partial_refit_origin()
      • validate_late_partial_stack()
      • validate_named_archive_contract()
      • validate_stacking_archive_contract()
    • nirs4all.pipeline.dagml.multimodal_tuning module
      • MultimodalTuningStopped
      • run_multimodal_tuning()
    • nirs4all.pipeline.dagml.na_policy module
      • ReplaceMissingValues
    • nirs4all.pipeline.dagml.named_stacking module
      • NamedStackingResult
      • project_named_stacking()
    • nirs4all.pipeline.dagml.named_torch module
      • is_named_torch_model()
      • named_learned_state_sha256()
      • named_task_seed()
      • named_torch_estimator()
      • named_torch_task_scope()
      • prepare_named_torch_pipeline()
    • nirs4all.pipeline.dagml.named_torch_estimator module
    • nirs4all.pipeline.dagml.native_archive_replay module
      • NativeArchiveConformalInterval
      • NativeArchivePrediction
      • NativeArchiveReplayError
      • predict_methods_archive_v2_raw()
      • predict_methods_archive_v2_raw_result()
      • project_methods_archive_v2_conformal_presentation()
      • replay_methods_archive_v2()
      • validate_methods_archive_v2()
      • write_methods_archive_v2()
    • nirs4all.pipeline.dagml.native_client module
      • DagMLNativeCapabilities
      • DagMLNativeClient
      • DagMLNativeCoverageError
      • native_client()
    • nirs4all.pipeline.dagml.native_conformal_calibration module
      • NativeConformalCalibrationError
      • NativeConformalCalibrationReplay
      • compile_methods_conformal_calibration_replay()
    • nirs4all.pipeline.dagml.native_pls_fold_hpo module
      • NativePlsFoldPlan
      • normalize_fold_resume_package()
      • prepare_native_pls_fold_plan()
      • validate_fold_splitter()
    • nirs4all.pipeline.dagml.native_pls_phase_controls module
      • NativePlsPhaseControls
      • attach_native_pls_phase_controls()
      • normalize_native_pls_phase_controls()
    • nirs4all.pipeline.dagml.native_pls_phase_replay module
      • is_native_pls_phase_package()
      • predict_native_pls_phase_archive()
      • read_native_pls_phase_archive()
    • nirs4all.pipeline.dagml.native_results module
      • native_results_enabled()
      • read_native_results()
      • separation_replay_manifest()
      • write_native_results()
    • nirs4all.pipeline.dagml.native_vote module
      • capture_vote_evidence()
      • collect_vote_evidence()
      • project_vote_evidence()
    • nirs4all.pipeline.dagml.node_runner module
      • capture_torch_topology()
      • emit_named_refit_origin()
      • run_meta_model_node()
      • run_model_node()
    • nirs4all.pipeline.dagml.operator_parameters module
      • decode_constructor_value()
      • encode_constructor_value()
    • nirs4all.pipeline.dagml.operator_routing module
      • route_operator()
    • nirs4all.pipeline.dagml.pipeline_objective module
      • PipelineObjective
      • PipelineObjectiveResult
      • apply_trial_parameter_patch()
      • make_conformal_prediction_score_extractor()
      • make_prediction_score_extractor()
    • nirs4all.pipeline.dagml.pipeline_objective_compiler module
      • CompiledPipelineObjective
      • compile_pipeline_objective()
      • run_single_estimator_tuning_to_run_result()
    • nirs4all.pipeline.dagml.process_adapter module
      • describe()
      • main()
      • run_jsonl_loop()
    • nirs4all.pipeline.dagml.public_batch module
      • run_dagml_public()
    • nirs4all.pipeline.dagml.public_normalization module
    • nirs4all.pipeline.dagml.raw_replay_lowerer module
      • RawArrayMethodsPortableRefitReplayCompiler
      • RawArrayMethodsReplayError
      • validate_native_methods_package()
      • validate_native_methods_refit_package_v3()
    • nirs4all.pipeline.dagml.raw_training_lowerer module
      • RawArrayDagMLTrainingCompiler
      • lower_raw_array_training_contracts()
      • raw_arrays_to_spectro_dataset()
    • nirs4all.pipeline.dagml.residual_run module
      • ResidualImplicitCvWarning
      • residual_operator()
      • run_residual_model()
    • nirs4all.pipeline.dagml.resolver module
    • nirs4all.pipeline.dagml.resources module
      • DagMLExecutionResources
      • bind_execution_resources()
      • normalize_execution_resources()
      • reset_execution_resources()
    • nirs4all.pipeline.dagml.result module
    • nirs4all.pipeline.dagml.rt module
      • RtResult
      • RtRunRequest
    • nirs4all.pipeline.dagml.run_backend module
      • preflight_dagml_backend()
      • run_via_dagml()
    • nirs4all.pipeline.dagml.run_paths module
      • DuplicationBranchMergeTransformer
      • DuplicationFusionEstimator
    • nirs4all.pipeline.dagml.sequential_models module
      • sequential_model_pipelines()
      • share_model_folds()
    • nirs4all.pipeline.dagml.source_missing module
      • append_source_presence()
      • build_prediction_availability()
      • checked_prediction_features()
      • checked_source_presence()
      • checked_target_validity()
      • predict_present_rows()
      • prediction_source_presence_metadata()
    • nirs4all.pipeline.dagml.source_stacking module
      • source_stacking_missing_policy()
    • nirs4all.pipeline.dagml.steps module
    • nirs4all.pipeline.dagml.structural_classification module
      • classification_output()
      • declared_classifier_topologies()
      • is_classification_choice()
      • lower_classifier_choices()
      • prepare_classification_structure()
      • run_fixed_classifier()
      • train_selected_classification()
      • validate_count_space()
    • nirs4all.pipeline.dagml.structural_multimodal module
      • is_methods_model_choice()
      • lower_typed_choices()
      • prepare_typed_structure()
      • train_selected_typed_structure()
      • validate_alpha_space()
      • validate_typed_profile()
    • nirs4all.pipeline.dagml.structural_sources module
      • build_source_selection_step()
      • validate_source_selection_alternatives()
    • nirs4all.pipeline.dagml.structural_topology module
      • declared_topologies()
      • is_topology_choice()
      • lower_topology_choices()
      • prepare_topology_structure()
      • train_selected_topology()
    • nirs4all.pipeline.dagml.structural_torch module
      • declared_torch_topologies()
      • is_torch_choice()
      • lower_torch_choices()
      • prepare_torch_structure()
      • torch_declaration()
      • validate_torch_space()
    • nirs4all.pipeline.dagml.structural_tuning module
      • is_structural_tuning_pipeline()
      • run_structural_tuning()
      • validate_structural_profile()
    • nirs4all.pipeline.dagml.target_capture module
      • CapturedTargetTransform
      • captured_target_transform()
    • nirs4all.pipeline.dagml.terminal_predict_lowerer module
      • StrictMethodsTerminalPredictionExecution
      • lower_strict_methods_terminal_prediction()
    • nirs4all.pipeline.dagml.torch_estimator module
      • prepare_torch_runtime()
    • nirs4all.pipeline.dagml.torch_topology_replay module
      • CapturedTorchTopology
      • capture_torch_topology()
      • emit_refit_attestation()
      • learned_state_sha256()
      • operator_name()
      • predict_torch_task()
      • replay_torch_topology()
      • selected_torch_features()
      • torch_task_scope()
      • validate_refit_attestation()
    • nirs4all.pipeline.dagml.training_compiler module
      • DagMLPreparedTrainingContracts
      • DagMLTrainingContractFactoryCompiler
      • DagMLTrainingRequestCompiler
      • DagMLTrainingRequestContracts
      • PreparedDagMLTrainingCompiler
      • compile_prepared_training_contracts()
    • nirs4all.pipeline.dagml.training_contracts module
      • tcv1_fingerprint_without()
      • training_data_identity_from_binding()
      • validate_training_request_with_dagml()
    • nirs4all.pipeline.dagml.training_controls module
      • apply_model_training_controls()
      • apply_pipeline_folds_to_model()
      • cv_weight_transfer_request()
      • effective_training_controls()
      • report_model_training_controls()
    • nirs4all.pipeline.dagml.tuning_adapters module
      • N4MPipelineObjectiveAdapter
      • ObjectiveTuningRunResult
      • OptunaPipelineObjectiveAdapter
      • TuningAdapterUnavailable
      • optimize_pipeline_objective()
      • run_pipeline_objective_tuning()
    • nirs4all.pipeline.dagml.tuning_contracts module
      • DagMLTuningNotImplementedError
      • get_tuning_summary_schema()
    • nirs4all.pipeline.dagml.tuning_projection module
      • project_objective_tuning_to_run_result()
    • nirs4all.pipeline.dagml.typed_parallel module
      • closed_candidate_audit()
    • nirs4all.pipeline.dagml.worker_environment module
    • nirs4all.pipeline.dagml.workspace_projection module
      • publish_workspace_result()
• nirs4all.pipeline.execution package
  • Subpackages
    • nirs4all.pipeline.execution.refit package
      • Submodules
  • Submodules
    • nirs4all.pipeline.execution.builder module
      • ExecutorBuilder
    • nirs4all.pipeline.execution.executor module
    • nirs4all.pipeline.execution.orchestrator module
      • PipelineOrchestrator
      • RunCancelledError
    • nirs4all.pipeline.execution.preprocessing module
      • FoldPreprocessedModel
      • FoldPreprocessing
      • PreprocessingReplay
      • feature_step()
      • observe_feature_step()
    • nirs4all.pipeline.execution.result module
      • ArtifactMeta
      • StepResult
    • nirs4all.pipeline.execution.step_cache module
      • CachedStepState
• nirs4all.pipeline.steps package
  • Submodules
    • nirs4all.pipeline.steps.parser module
      • StepType
    • nirs4all.pipeline.steps.router module
    • nirs4all.pipeline.steps.step_runner module
• nirs4all.pipeline.storage package
  • Subpackages
    • nirs4all.pipeline.storage.artifacts package
      • Submodules
  • Submodules
    • nirs4all.pipeline.storage.array_store module
      • ArrayStore
    • nirs4all.pipeline.storage.chain_builder module
    • nirs4all.pipeline.storage.chain_replay module
      • replay_chain()
    • nirs4all.pipeline.storage.library module
      • PipelineLibrary
    • nirs4all.pipeline.storage.model_catalogue module
      • read_model_catalogue()
    • nirs4all.pipeline.storage.prediction_export module
      • export_prediction_arrays()
    • nirs4all.pipeline.storage.store_protocol module
      • WorkspaceStoreProtocol
    • nirs4all.pipeline.storage.store_queries module
      • build_chain_predictions_query()
      • build_chain_summary_count_query()
      • build_prediction_query()
      • build_top_chains_query()
      • build_top_predictions_query()
    • nirs4all.pipeline.storage.store_schema module
      • REFIT_CONTEXT_STACKING
      • REFIT_CONTEXT_STANDALONE
      • create_schema()
    • nirs4all.pipeline.storage.workspace_read_contract module
      • studio_run_detail_http_contract()
      • studio_run_detail_http_inputs_v1()
      • workspace_store_read_contract()
      • workspace_store_results_summary_contract()
    • nirs4all.pipeline.storage.workspace_store module
• nirs4all.pipeline.trace package
  • Submodules
    • nirs4all.pipeline.trace.execution_trace module
    • nirs4all.pipeline.trace.extractor module
    • nirs4all.pipeline.trace.recorder module

Submodules

• nirs4all.pipeline.dagml_bridge module
  • compile_with_dagml()
  • constrained_operator_survivor_sequences()
  • is_grid_param_generator_spec()
  • is_param_generator_spec()
  • lower_constrained_operator_pipeline()
  • operator_choice_variant_label()
  • operator_sequence_variant_label()
  • step_has_native_grid()
• nirs4all.pipeline.engine module
  • ExecutionProfileError
  • LegacyEngineUsageWarning
  • get_legacy_engine_usage_counts()
  • legacy_fallback_metrics()
  • require_legacy_engine()
• nirs4all.pipeline.explain_lineage module
  • RelationExplainLineage
    • RelationExplainLineage.explanation_level
    • RelationExplainLineage.feature_lineage
    • RelationExplainLineage.feature_names
    • RelationExplainLineage.lineage_warning
• nirs4all.pipeline.explainer module
  • Explainer
    • Explainer.capture_model()
    • Explainer.explain()
• nirs4all.pipeline.keyword_registry module
  • get_keyword_registry()
  • get_keyword_registry_schema()
• nirs4all.pipeline.minimal_predictor module
  • MinimalArtifactProvider
    • MinimalArtifactProvider.get_artifact()
    • MinimalArtifactProvider.get_artifacts_for_step()
    • MinimalArtifactProvider.get_fold_artifacts()
    • MinimalArtifactProvider.get_fold_weights()
    • MinimalArtifactProvider.has_artifacts_for_step()
  • MinimalPredictor
    • MinimalPredictor.predict()
    • MinimalPredictor.predict_with_fold_ensemble()
    • MinimalPredictor.validate_minimal_pipeline()
• nirs4all.pipeline.portable_n4m_roles module
  • PortableN4MRolePipeline
• nirs4all.pipeline.portable_n4m_trained module
  • PortableN4MTrainedPipeline
    • PortableN4MTrainedPipeline.close()
    • PortableN4MTrainedPipeline.fit_recipe()
    • PortableN4MTrainedPipeline.from_json()
    • PortableN4MTrainedPipeline.predict()
    • PortableN4MTrainedPipeline.predict_proba()
    • PortableN4MTrainedPipeline.predict_scores()
    • PortableN4MTrainedPipeline.retrain()
    • PortableN4MTrainedPipeline.to_json()
  • RefittedN4MPipeline
    • RefittedN4MPipeline.predict()
• nirs4all.pipeline.predictor module
  • Predictor
    • Predictor.predict()
• nirs4all.pipeline.resolver module
  • FoldStrategy
    • FoldStrategy.AVERAGE
    • FoldStrategy.SINGLE
    • FoldStrategy.WEIGHTED_AVERAGE
  • SourceType
    • SourceType.ARTIFACT_ID
    • SourceType.BUNDLE
    • SourceType.FOLDER
    • SourceType.MODEL_FILE
    • SourceType.PREDICTION
    • SourceType.PREDICTION_ID
    • SourceType.RUN
    • SourceType.TRACE_ID
    • SourceType.UNKNOWN
• nirs4all.pipeline.retrainer module
  • ExtractedPipeline
    • ExtractedPipeline.artifact_provider
    • ExtractedPipeline.get_model_step()
    • ExtractedPipeline.get_step()
    • ExtractedPipeline.metadata
    • ExtractedPipeline.model_step_index
    • ExtractedPipeline.preprocessing_chain
    • ExtractedPipeline.set_model()
    • ExtractedPipeline.set_step()
    • ExtractedPipeline.source_pipeline_uid
    • ExtractedPipeline.steps
    • ExtractedPipeline.trace
  • RetrainArtifactProvider
    • RetrainArtifactProvider.get_artifact()
    • RetrainArtifactProvider.get_artifacts_for_step()
    • RetrainArtifactProvider.get_fold_artifacts()
    • RetrainArtifactProvider.has_artifacts_for_step()
  • RetrainConfig
    • RetrainConfig.epochs
    • RetrainConfig.freeze_layers
    • RetrainConfig.get_step_mode()
    • RetrainConfig.learning_rate
    • RetrainConfig.metadata
    • RetrainConfig.mode
    • RetrainConfig.new_model
    • RetrainConfig.should_train_step()
    • RetrainConfig.step_modes
  • RetrainMode
    • RetrainMode.FINETUNE
    • RetrainMode.FULL
    • RetrainMode.TRANSFER
  • Retrainer
    • Retrainer.extract()
    • Retrainer.retrain()
  • StepMode
    • StepMode.artifact_id
    • StepMode.is_predict()
    • StepMode.is_train()
    • StepMode.kwargs
    • StepMode.mode
    • StepMode.step_index
• nirs4all.pipeline.run module
  • DatasetInfo
    • DatasetInfo.file_size
    • DatasetInfo.hash
    • DatasetInfo.metadata
    • DatasetInfo.n_features
    • DatasetInfo.n_samples
    • DatasetInfo.name
    • DatasetInfo.path
    • DatasetInfo.task_type
    • DatasetInfo.version
    • DatasetInfo.wavelength_range
    • DatasetInfo.wavelength_unit
    • DatasetInfo.y_columns
    • DatasetInfo.y_stats
  • Run
    • Run.add_checkpoint()
    • Run.can_transition_to()
    • Run.checkpoints
    • Run.completed_at
    • Run.config
    • Run.created_at
    • Run.datasets
    • Run.from_dict()
    • Run.id
    • Run.name
    • Run.started_at
    • Run.status
    • Run.summary
    • Run.templates
    • Run.to_dict()
    • Run.total_pipeline_configs
    • Run.total_results_expected
    • Run.transition_to()
  • RunConfig
    • RunConfig.cv_folds
    • RunConfig.cv_strategy
    • RunConfig.metric
    • RunConfig.project
    • RunConfig.random_state
    • RunConfig.save_models
    • RunConfig.save_predictions
  • RunStatus
    • RunStatus.CANCELLED
    • RunStatus.COMPLETED
    • RunStatus.FAILED
    • RunStatus.PAUSED
    • RunStatus.QUEUED
    • RunStatus.RUNNING
  • RunSummary
    • RunSummary.best_result
    • RunSummary.completed_results
    • RunSummary.failed_results
    • RunSummary.total_results
  • TemplateInfo
    • TemplateInfo.description
    • TemplateInfo.expansion_count
    • TemplateInfo.file_path
    • TemplateInfo.id
    • TemplateInfo.name
  • generate_run_id()
  • get_metric_info()
  • is_better_score()
• nirs4all.pipeline.runner module
  • init_global_random_state()