Index

_

__call__() (nirs4all.pipeline.dagml.fixed_cohort_views.FixedCohortViewStore method) __delitem__() (nirs4all.pipeline.config.context.DataSelector method) __enter__() (nirs4all.core.logging.progress.EvaluationProgress method) (nirs4all.core.logging.progress.ProgressBar method) (nirs4all.core.logging.progress.SpinnerProgress method) __exit__() (nirs4all.core.logging.progress.EvaluationProgress method) (nirs4all.core.logging.progress.ProgressBar method) (nirs4all.core.logging.progress.SpinnerProgress method) __getitem__() (nirs4all.pipeline.config.context.DataSelector method) (nirs4all.visualization.analysis.branch.BranchSummary method) __iter__() (nirs4all.pipeline.config.context.DataSelector method) __len__() (nirs4all.pipeline.config.context.DataSelector method) (nirs4all.visualization.analysis.branch.BranchSummary method) (nirs4all.visualization.prediction_cache.PredictionCache method) __post_init__() (nirs4all.analysis.results.TransferResult method) (nirs4all.controllers.data.merge.SourceMergeConfig method) (nirs4all.operators.data.merge.MergeConfig method) (nirs4all.operators.data.merge.SourceBranchConfig method) (nirs4all.operators.data.repetition.RepetitionConfig method) (nirs4all.synthesis.environmental.MoistureConfig method) (nirs4all.synthesis.fitter.DerivativeAwareForwardModelFitter method) (nirs4all.synthesis.fitter.ForwardModelFitter method) (nirs4all.synthesis.products.ComponentVariation method) (nirs4all.synthesis.products.ProductTemplate method)

__repr__() (nirs4all.data.predictions.PredictionResult method) (nirs4all.data.predictions.PredictionResultsList method) (nirs4all.operators.filters.spectral_quality.SpectralQualityFilter method) (nirs4all.operators.filters.y_outlier.YOutlierFilter method) (nirs4all.operators.models.sklearn.fckpls.FCKPLS method) (nirs4all.operators.models.sklearn.ipls.IntervalPLS method) (nirs4all.operators.models.sklearn.kopls.KOPLS method) (nirs4all.operators.models.sklearn.lwpls.LWPLS method) (nirs4all.operators.models.sklearn.mbpls.MBPLS method) (nirs4all.operators.models.sklearn.oklmpls.OKLMPLS method) (nirs4all.operators.models.sklearn.recursive_pls.RecursivePLS method) (nirs4all.operators.models.sklearn.robust_pls.RobustPLS method) (nirs4all.operators.models.sklearn.simpls.SIMPLS method) (nirs4all.operators.models.sklearn.sparsepls.SparsePLS method) (nirs4all.operators.transforms.feature_selection.FlexiblePCA method) (nirs4all.operators.transforms.feature_selection.FlexibleSVD method) (nirs4all.sklearn.classifier.NIRSPipelineClassifier method) (nirs4all.synthesis.products.CategoryGenerator method) (nirs4all.synthesis.products.ProductGenerator method) (nirs4all.visualization.analysis.branch.BranchSummary method) __setitem__() (nirs4all.pipeline.config.context.DataSelector method) __sklearn_clone__() (nirs4all.operators.transforms.targets.RangeDiscretizer method) __str__() (nirs4all.data.predictions.PredictionResult method) (nirs4all.pipeline.config.generator.ValidationError method) (nirs4all.pipeline.config.generator.ValidationResult method)

A

abbreviate_metric() (in module nirs4all.core.metrics) ABORT (nirs4all.data.schema.config.NAPolicy attribute) ABSORBANCE (nirs4all.data.schema.config.SignalTypeEnum attribute) AbsorbanceBase (class in nirs4all.operators.models.sklearn.aom_fast) AcceleratedArrays (class in nirs4all.synthesis.accelerated) AcceleratedGenerator (class in nirs4all.synthesis.accelerated) AcceleratorBackend (class in nirs4all.synthesis.accelerated) Activation (class in nirs4all.operators.models.jax.nicon) activation (nirs4all.operators.models.jax.nicon.DepthwiseConv1D attribute) (nirs4all.operators.models.jax.nicon.SeparableConv1D attribute) active (nirs4all.pipeline.execution.preprocessing.FoldPreprocessing attribute) active_handle_count (nirs4all.pipeline.dagml.methods_replay.MethodsN4mmReplayCallbacks property) adapters (nirs4all.operators.data.merge.MetaFeaturePlan attribute) adc_bits (nirs4all.synthesis.detectors.NoiseModelConfig attribute) add() (nirs4all.data.schema.validation.error_codes.DiagnosticReport method) add_artifacts_commands() (in module nirs4all.cli.commands.artifacts) add_checkpoint() (nirs4all.pipeline.run.Run method) add_config_commands() (in module nirs4all.cli.commands.config) add_dataset_commands() (in module nirs4all.cli.commands.dataset) add_dependencies() (nirs4all.pipeline.storage.artifacts.artifact_registry.DependencyGraph method) add_dependency() (nirs4all.pipeline.storage.artifacts.artifact_registry.DependencyGraph method) add_error() (nirs4all.controllers.models.stacking.reconstructor.ValidationResult method) (nirs4all.data.schema.validation.error_codes.DiagnosticReport method) (nirs4all.pipeline.config.generator.ValidationResult method) add_feature (nirs4all.pipeline.config.context.StepMetadata attribute) add_filter_result() (nirs4all.operators.filters.report.FilteringReport method) add_heatmap_annotations() (nirs4all.visualization.chart_utils.annotator.ChartAnnotator method) add_keyword_registry_command() (in module nirs4all.cli.commands.keyword_registry) add_results_commands() (in module nirs4all.cli.commands.results) add_robustness_report_command() (in module nirs4all.cli.commands.robustness_report) add_robustness_summary_schema_command() (in module nirs4all.cli.commands.robustness_summary_schema) add_statistics_box() (nirs4all.visualization.chart_utils.annotator.ChartAnnotator method) add_tuning_commands() (in module nirs4all.cli.commands.tuning) add_tuning_space_command() (in module nirs4all.cli.commands.tuning_space) add_tuning_summary_schema_command() (in module nirs4all.cli.commands.tuning_summary_schema) add_warning() (nirs4all.controllers.models.stacking.reconstructor.ValidationResult method) add_workflow_commands() (in module nirs4all.cli.commands.workflow) add_workspace_commands() (in module nirs4all.cli.commands.workspace) added (nirs4all.data.serialization.serializer.ConfigDiff attribute) additional_diagnostics (nirs4all.pipeline.dagml.raw_training_lowerer.RawArrayDagMLTrainingCompiler attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingContractFactoryCompiler attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingRequestCompiler attribute) (nirs4all.pipeline.dagml.training_compiler.PreparedDagMLTrainingCompiler attribute) additional_params (nirs4all.synthesis.domains.DomainConfig attribute) additive_scatter_std (nirs4all.synthesis.fitter.ScatteringInference attribute) adjoint_vec() (nirs4all.operators.models.sklearn.aom_fast.OperatorChain method) (nirs4all.operators.models.sklearn.aom_pls.LinearSpectralOperator method) advanced_api_capability_ledger() (in module nirs4all.api.advanced_capabilities) AdvancedApiCapabilityDecision (class in nirs4all.api.advanced_capabilities) ADVERSARIAL_AUC (nirs4all.synthesis.validation.RealismMetric attribute) adversarial_auc (nirs4all.synthesis.validation.SpectralRealismScore attribute) aggregate (nirs4all.api.inspector_views.HeatmapRequest attribute) (nirs4all.data.raw_multisource.RawMultiSourceDataset property) aggregate() (nirs4all.controllers.data.merge.PredictionAggregator static method) aggregate_folds() (nirs4all.controllers.data.merge.PredictionAggregator static method) aggregate_importance_by_model() (nirs4all.controllers.models.stacking.classification.MetaFeatureInfo method) aggregate_metadata (nirs4all.operators.data.repetition.RepetitionConfig attribute) aggregate_name (nirs4all.synthesis.builder.BuilderState attribute) aggregate_variability (nirs4all.synthesis.builder.BuilderState attribute) AggregateMethod (class in nirs4all.data.schema.config) aggregation (nirs4all.api.inspector_views.ScoreRef attribute) AGGREGATION (nirs4all.data.schema.validation.error_codes.ErrorCategory attribute) AGRICULTURE (nirs4all.synthesis.benchmarks.BenchmarkDomain attribute) (nirs4all.synthesis.domains.DomainCategory attribute) AirPLS (class in nirs4all.operators.transforms.nirs) align_prediction_feature_vectors() (in module nirs4all.data.meta_features) aligned_row_order() (nirs4all.data.raw_multisource.RawMultiSourceDataset method) AlignedMaterialization (class in nirs4all.data.raw_multisource) AlignedMetaFeatures (class in nirs4all.data.meta_features) alignment_key (nirs4all.operators.data.merge.MetaFeaturePlan attribute) ALL (nirs4all.operators.data.merge.MergeMode attribute) all_codes() (nirs4all.data.schema.validation.error_codes.ErrorRegistry class method) ALLOW (nirs4all.operators.data.merge.ShapeMismatchStrategy attribute) allow_experimental_combo_meta (nirs4all.operators.data.merge.MetaFeaturePlan attribute) allow_fallbacks (nirs4all.operators.data.merge.MetaFeaturePlan attribute) allow_repeats_in_role (nirs4all.operators.models.sklearn.aom_fast.ChainGrammar attribute) allowed_roles_per_position (nirs4all.operators.models.sklearn.aom_fast.ChainGrammar attribute) alternative_archetypes (nirs4all.synthesis.fitter.InstrumentInference attribute) alternative_domains (nirs4all.synthesis.fitter.DomainInference attribute) AMINE (nirs4all.synthesis.procedural.FunctionalGroupType attribute) amplitude (nirs4all.synthesis.components.NIRBand attribute) amplitude_factor (nirs4all.synthesis.wavenumber.CombinationBandResult attribute) (nirs4all.synthesis.wavenumber.OvertoneResult attribute) amplitude_variability (nirs4all.synthesis.procedural.ProceduralComponentConfig attribute) amplitudes (nirs4all.synthesis.fitter.RealBandFitResult attribute) analyze_all() (nirs4all.controllers.data.merge.AsymmetricBranchAnalyzer method) analyze_branch() (nirs4all.controllers.data.merge.AsymmetricBranchAnalyzer method) analyze_topology() (in module nirs4all.pipeline.analysis.topology) anharmonicity (nirs4all.synthesis.procedural.ProceduralComponentConfig attribute) anharmonicity_variability (nirs4all.synthesis.procedural.ProceduralComponentConfig attribute) ANY (nirs4all.data.reduction.TaskCompatibility attribute) AOMKernelizer (class in nirs4all.operators.models.sklearn.aom_ridge) AOMLocalRidge (class in nirs4all.operators.models.sklearn.aom_ridge) AOMMultiBranchMKL (class in nirs4all.operators.models.sklearn.aom_ridge) AOMMultiKernelRidge (class in nirs4all.operators.models.sklearn.aom_ridge) AOMPLSAomlibRegressor (class in nirs4all.operators.models.sklearn.aom_pls_aomlib) AOMPLSClassifier (in module nirs4all.operators.models.sklearn.aom_pls_classifier) AOMPLSRegressor (in module nirs4all.operators.models.sklearn.aom_pls) AOMRidgeAutoSelector (class in nirs4all.operators.models.sklearn.aom_ridge) AOMRidgeBlender (class in nirs4all.operators.models.sklearn.aom_ridge) AOMRidgeClassifier (class in nirs4all.operators.models.sklearn.aom_ridge) AOMRidgePLS (class in nirs4all.operators.models.sklearn.aom_ridge) AOMRidgePLSCV (class in nirs4all.operators.models.sklearn.aom_ridge)

AOMRidgeRegressor (class in nirs4all.operators.models.sklearn.aom_ridge) AOTF (nirs4all.synthesis.instruments.MonochromatorType attribute) append_source_presence() (in module nirs4all.pipeline.dagml.source_missing) apply() (nirs4all.pipeline.dagml.conformal_contracts.SplitConformalCalibrator method) (nirs4all.pipeline.dagml.exclude.FoldLocalExclusion method) (nirs4all.synthesis.detectors.DetectorSimulator method) (nirs4all.synthesis.fitter.InstrumentChain method) apply_all_constraints() (in module nirs4all.pipeline.config.generator) apply_block() (nirs4all.pipeline.dagml.conformal_contracts.SplitConformalCalibrator method) apply_conformal_artifact_to_predictions() (in module nirs4all.pipeline.dagml.conformal_contracts) apply_cov() (nirs4all.operators.models.sklearn.aom_fast.OperatorChain method) (nirs4all.operators.models.sklearn.aom_pls.LinearSpectralOperator method) apply_exclude_constraint() (in module nirs4all.pipeline.config.generator) apply_experimental_unit_contract() (in module nirs4all.pipeline.dagml.experimental_units) apply_hydrogen_bonding_shift() (in module nirs4all.synthesis.wavenumber) apply_matching_preprocessing() (nirs4all.synthesis.fitter.RealDataFitter method) apply_model_training_controls() (in module nirs4all.pipeline.dagml.training_controls) apply_mutex_constraint() (in module nirs4all.pipeline.config.generator) apply_na_policy() (in module nirs4all.data.loaders.base) apply_nonlinearity (nirs4all.synthesis.detectors.DetectorConfig attribute) apply_pipeline_folds_to_aom_estimator() (in module nirs4all.controllers.models.pipeline_cv) apply_pipeline_folds_to_model() (in module nirs4all.pipeline.dagml.training_controls) apply_random_transformer_selection() (nirs4all.controllers.data.balancing.BalancingCalculator static method) apply_requires_constraint() (in module nirs4all.pipeline.config.generator) apply_response_curve (nirs4all.synthesis.detectors.DetectorConfig attribute) apply_single_preprocessing() (in module nirs4all.analysis.transfer_utils) apply_split_conformal_calibrator() (in module nirs4all.pipeline.dagml.conformal_contracts) apply_trial_parameter_patch() (in module nirs4all.pipeline.dagml.pipeline_objective) arange (nirs4all.synthesis.accelerated.AcceleratedArrays attribute) archetype_name (nirs4all.synthesis.fitter.InstrumentInference attribute) archive_metadata() (in module nirs4all.pipeline.dagml.multimodal_contracts) AROMATIC_CH (nirs4all.synthesis.procedural.FunctionalGroupType attribute) ArPLS (class in nirs4all.operators.transforms.nirs) array (nirs4all.synthesis.accelerated.AcceleratedArrays attribute) arrays_dir (nirs4all.pipeline.storage.array_store.ArrayStore property) ArrayStore (class in nirs4all.pipeline.storage.array_store) ARTIFACT (nirs4all.core.logging.events.EventType attribute) artifact (nirs4all.pipeline.dagml.conformal_contracts.CalibratedRunResult attribute) artifact() (nirs4all.core.logging.config.Nirs4allLogger method) artifact_callback (nirs4all.pipeline.dagml.estimator.DagMLReplayExecution attribute) artifact_callback() (nirs4all.pipeline.dagml.methods_replay.MethodsN4mmReplayCallbacks method) artifact_fingerprint (nirs4all.pipeline.dagml.conformal_store.ConformalStoreManifest attribute) artifact_handles (nirs4all.pipeline.dagml.estimator.DagMLReplayExecution attribute) ARTIFACT_ID (nirs4all.pipeline.resolver.SourceType attribute) artifact_id (nirs4all.pipeline.retrainer.StepMode attribute) artifact_id_matches_context() (in module nirs4all.pipeline.storage.artifacts.utils) artifact_provider (nirs4all.pipeline.retrainer.ExtractedPipeline attribute) artifact_registry (nirs4all.pipeline.execution.builder.ExecutorBuilder property) ArtifactMeta (class in nirs4all.pipeline.execution.result) artifacts (nirs4all.pipeline.dagml.rt.RtResult attribute) (nirs4all.pipeline.execution.preprocessing.PreprocessingReplay attribute) (nirs4all.pipeline.execution.result.StepResult attribute) artifacts_cleanup() (in module nirs4all.cli.commands.artifacts) artifacts_list_orphaned() (in module nirs4all.cli.commands.artifacts) artifacts_purge() (in module nirs4all.cli.commands.artifacts) artifacts_stats() (in module nirs4all.cli.commands.artifacts) as_dataset (nirs4all.synthesis.builder.BuilderState attribute) as_dict() (nirs4all.pipeline.dagml.cv_weight_transfer.TransferIdentity method) (nirs4all.pipeline.dagml.cv_weight_transfer.TransferInputContract method) as_fragmented() (nirs4all.synthesis.exporter.CSVVariationGenerator method) as_key() (nirs4all.data.reduction.PredictionUnitId method) as_predict_result (nirs4all.api.tuning.TuningCalibration attribute) as_repetition_aggregation() (nirs4all.data.reduction.ReductionPlan method) as_sample_filter() (in module nirs4all.operators.filters.native) as_single_file() (nirs4all.synthesis.exporter.CSVVariationGenerator method) asls_grid (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) ASLSBase (class in nirs4all.operators.models.sklearn.aom_fast) ASLSBaseline (class in nirs4all.operators.transforms.nirs) assemble_constrained_cv_refit_dsl() (in module nirs4all.pipeline.dagml.cli_runner) assemble_cv_refit_dsl() (in module nirs4all.pipeline.dagml.cli_runner) AsymmetricBranchAnalyzer (class in nirs4all.controllers.data.merge) AsymmetryReport (class in nirs4all.controllers.data.merge) ATR (nirs4all.synthesis.fitter.MeasurementModeInference attribute) ATRConfig (class in nirs4all.synthesis.measurement_modes) attach_calibrated_result_to_bundle() (in module nirs4all.api.calibrate) attach_conformal_result_to_bundle() (in module nirs4all.pipeline.dagml.conformal_store) attach_host_finetune_splitter() (in module nirs4all.pipeline.dagml.host_finetune) attach_native_pls_phase_controls() (in module nirs4all.pipeline.dagml.native_pls_phase_controls) audit_link_by_alignment() (in module nirs4all.data.relations) audit_link_by_executable() (in module nirs4all.data.relations) audit_source_lengths() (in module nirs4all.data.relations) augment_sample (nirs4all.pipeline.config.context.StepMetadata attribute) AugmentationChartController (class in nirs4all.controllers.charts.augmentation) augmented (nirs4all.pipeline.dagml.identity.SampleIdentity attribute) AUTO (nirs4all.data.fit_influence.FitInfluenceMode attribute) (nirs4all.data.schema.config.CategoricalMode attribute) (nirs4all.data.schema.config.NAPolicy attribute) (nirs4all.data.schema.config.SignalTypeEnum attribute) (nirs4all.data.schema.config.TaskType attribute) AutoDetector (class in nirs4all.data.detection.detector) autogluon_step_estimator() (in module nirs4all.pipeline.dagml.autogluon_estimator) AutoGluonModelController (class in nirs4all.controllers.models.autogluon_model) AutoTransferPreprocessingController (class in nirs4all.controllers.data.auto_transfer_preproc) available_components() (in module nirs4all.synthesis.components) available_datasets (nirs4all.api.inspector_views.InspectorDataResponse attribute) available_metrics (nirs4all.api.inspector_views.InspectorDataResponse attribute) available_models (nirs4all.api.inspector_views.InspectorDataResponse attribute) available_params (nirs4all.api.inspector_views.HyperparameterResponse attribute) available_preprocessings (nirs4all.api.inspector_views.InspectorDataResponse attribute) available_runs (nirs4all.api.inspector_views.InspectorDataResponse attribute) available_targets (nirs4all.api.inspector_views.InspectorDataResponse attribute) AVERAGE (nirs4all.pipeline.resolver.FoldStrategy attribute) avg_val_score (nirs4all.pipeline.config.context.BestChainEntry attribute) axis (nirs4all.data.reduction.ReductionPlan attribute)

B

backend (nirs4all.synthesis.accelerated.AcceleratedArrays attribute) BACKEND_LOSS_WEIGHT (nirs4all.data.fit_influence.FitInfluenceMode attribute) BalancingCalculator (class in nirs4all.controllers.data.balancing) band_assignments (nirs4all.synthesis.fitter.RealBandFitResult attribute) band_centers (nirs4all.synthesis.fitter.RealBandFitResult attribute) band_names (nirs4all.synthesis.fitter.RealBandFitResult attribute) band_type (nirs4all.synthesis.wavenumber.CombinationBandResult attribute) BandMasking (class in nirs4all.operators.augmentation.spectral) BandPerturbation (class in nirs4all.operators.augmentation.spectral) bands (nirs4all.synthesis.components.SpectralComponent attribute) bandwidth_factor (nirs4all.synthesis.wavenumber.OvertoneResult attribute) bandwidth_variability (nirs4all.synthesis.procedural.ProceduralComponentConfig attribute) bank_by_name() (in module nirs4all.operators.models.sklearn.aom_pls) bar_width (nirs4all.core.logging.progress.ProgressConfig attribute) bard() (in module nirs4all.operators.models.tensorflow.generic) base (nirs4all.operators.models.sklearn.aom_fast.LowRankBase attribute) base_index (nirs4all.operators.models.sklearn.aom_fast.ScreeningCandidate attribute) base_name (nirs4all.operators.models.sklearn.aom_fast.ScreeningCandidate attribute) base_params (nirs4all.pipeline.dagml.native_pls_phase_controls.NativePlsPhaseControls attribute) base_prediction_calibration (nirs4all.operators.data.merge.StackingFitContract attribute) BaseChart (class in nirs4all.visualization.charts.base) BaseController (class in nirs4all.controllers.base) Baseline (class in nirs4all.operators.transforms.signal) baseline() (in module nirs4all.operators.transforms.signal) baseline_amplitude (nirs4all.synthesis.fitter.FittedParameters attribute) baseline_coefficients (nirs4all.synthesis.fitter.ComponentFitResult attribute) (nirs4all.synthesis.fitter.OptimizedFitResult attribute) (nirs4all.synthesis.fitter.RealBandFitResult attribute) baseline_convexity (nirs4all.synthesis.fitter.SpectralProperties attribute) baseline_curvature (nirs4all.synthesis.fitter.ScatteringInference attribute) BASELINE_CURVATURE (nirs4all.synthesis.validation.RealismMetric attribute) baseline_curvature_overlap (nirs4all.synthesis.validation.SpectralRealismScore attribute) baseline_offset (nirs4all.synthesis.fitter.SpectralProperties attribute) baseline_order (nirs4all.synthesis.fitter.DerivativeAwareForwardModelFitter attribute) (nirs4all.synthesis.fitter.ForwardModelFitter attribute) baseline_r_squared (nirs4all.synthesis.fitter.OptimizedFitResult attribute) baseline_scattering (nirs4all.synthesis.measurement_modes.ScatteringConfig attribute) (nirs4all.synthesis.scattering.ScatteringCoefficientConfig attribute) BaseModelOperator (class in nirs4all.operators.models.base) BaseParser (class in nirs4all.data.parsers.base) BaseTransform (class in nirs4all.operators.models.sklearn.aom_fast) batch (nirs4all.analysis.playground_dataset.PlaygroundDatasetSelection attribute) batch_effects_enabled (nirs4all.synthesis.builder.BuilderState attribute) batch_gain_std (nirs4all.synthesis.builder.BuilderState attribute) batch_iter() (in module nirs4all.pipeline.config.generator) batch_offset_std (nirs4all.synthesis.builder.BuilderState attribute) BatchEffectAugmenter (class in nirs4all.operators.augmentation.synthesis) BEADS (class in nirs4all.operators.transforms.nirs) beam_width (nirs4all.operators.models.sklearn.aom_fast.ChainGenerationConfig attribute) begin_pipeline() (nirs4all.pipeline.storage.store_protocol.WorkspaceStoreProtocol method) begin_run() (nirs4all.pipeline.storage.store_protocol.WorkspaceStoreProtocol method) benchmark_backends() (in module nirs4all.synthesis.accelerated) BenchmarkDatasetInfo (class in nirs4all.synthesis.benchmarks) BenchmarkDomain (class in nirs4all.synthesis.benchmarks) BENCHTOP (nirs4all.synthesis.instruments.InstrumentCategory attribute) best (nirs4all.analysis.results.TransferSelectionResults property) best_params (nirs4all.pipeline.config.context.BestChainEntry attribute) (nirs4all.pipeline.execution.refit.model_selector.PerModelSelection attribute) best_pipeline (nirs4all.core.logging.progress.EvaluationProgress property) best_result (nirs4all.pipeline.run.RunSummary attribute) best_score (nirs4all.core.logging.progress.EvaluationProgress property) (nirs4all.pipeline.execution.refit.model_selector.PerModelSelection attribute) BestChainEntry (class in nirs4all.pipeline.config.context) BEVERAGE (nirs4all.synthesis.domains.DomainCategory attribute) bias (nirs4all.api.robustness.RobustnessMetricSet attribute) bias_squared (nirs4all.api.inspector_views.BiasVarianceEntry attribute) (nirs4all.pipeline.analysis.model_diagnostics.BiasVarianceDecomposition attribute) bias_variance_decomposition() (in module nirs4all.pipeline.analysis.model_diagnostics) BiasVarianceDecomposition (class in nirs4all.pipeline.analysis.model_diagnostics) BiasVarianceEntry (class in nirs4all.api.inspector_views) BiasVarianceRequest (class in nirs4all.api.inspector_views) BiasVarianceResponse (class in nirs4all.api.inspector_views) bin_end (nirs4all.api.inspector_views.HistogramBin attribute) bin_start (nirs4all.api.inspector_views.HistogramBin attribute) BINARY_CLASSIFICATION (nirs4all.controllers.models.stacking.classification.StackingTaskType attribute) (nirs4all.data.schema.config.TaskType attribute) BinarySearchSampler (class in nirs4all.optimization.optuna) bind_dense_concat_input_contract() (in module nirs4all.pipeline.dagml.multimodal_contracts) bind_execution_resources() (in module nirs4all.pipeline.dagml.resources) bind_input_contract() (in module nirs4all.pipeline.dagml.multimodal_contracts) bind_methods_dsl() (in module nirs4all.pipeline.dagml.methods_multimodal) bind_source_output_contract() (in module nirs4all.pipeline.dagml.attested_by_source) bind_task() (nirs4all.pipeline.dagml.fixed_cohort_views.FixedCohortViewStore method) bind_transfer_operators() (in module nirs4all.api.general_transfer) binding_id (nirs4all.pipeline.dagml.native_conformal_calibration.NativeConformalCalibrationReplay attribute) bindings (nirs4all.pipeline.dagml.late_tuning.LateFusionTuningRecipe attribute) BinnedStratifiedGroupKFold (class in nirs4all.operators.splitters.splitters) bins (nirs4all.api.inspector_views.HistogramResponse attribute) BIOMEDICAL (nirs4all.synthesis.domains.DomainCategory attribute) BOUND_WATER_PEAK_1ST (nirs4all.operators.augmentation.environmental.MoistureAugmenter attribute) BOUND_WATER_PEAK_COMB (nirs4all.operators.augmentation.environmental.MoistureAugmenter attribute) bound_water_shift (nirs4all.synthesis.environmental.MoistureConfig attribute) boundary_components_config (nirs4all.synthesis.fitter.FittedParameters attribute)

boundary_peak_amplitudes (nirs4all.synthesis.fitter.EdgeArtifactInference attribute) BoundTransferOperator (class in nirs4all.api.general_transfer) BRANCH_COMPARE (nirs4all.core.logging.events.EventType attribute) branch_depth (nirs4all.core.logging.context.RunState property) (nirs4all.pipeline.analysis.topology.ModelNodeInfo attribute) BRANCH_ENTER (nirs4all.core.logging.events.EventType attribute) BRANCH_EXIT (nirs4all.core.logging.events.EventType attribute) branch_id (nirs4all.controllers.data.merge.BranchAnalysisResult attribute) (nirs4all.controllers.models.stacking.branch_validator.BranchInfo attribute) (nirs4all.pipeline.config.context.DataSelector attribute) (nirs4all.visualization.pipeline_diagram.PipelineNode attribute) branch_index (nirs4all.core.logging.events.LogEvent attribute) branch_info (nirs4all.controllers.data.merge.DisjointMergeResult attribute) BRANCH_LEVEL (nirs4all.operators.data.merge.SelectionProtocol attribute) branch_name (nirs4all.controllers.data.merge.BranchAnalysisResult attribute) (nirs4all.controllers.models.stacking.branch_validator.BranchInfo attribute) (nirs4all.core.logging.events.LogEvent attribute) (nirs4all.pipeline.config.context.DataSelector attribute) (nirs4all.visualization.pipeline_diagram.PipelineNode attribute) branch_path (nirs4all.api.inspector_views.BranchComparisonEntry attribute) (nirs4all.api.inspector_views.TopologyNode attribute) (nirs4all.controllers.models.stacking.branch_validator.BranchInfo attribute) (nirs4all.core.logging.context.RunState property) (nirs4all.core.logging.events.LogEvent attribute) (nirs4all.pipeline.analysis.topology.ModelNodeInfo attribute) (nirs4all.pipeline.config.context.DataSelector attribute) (nirs4all.pipeline.execution.refit.model_selector.PerModelSelection attribute) (nirs4all.pipeline.storage.artifacts.utils.ExecutionPath attribute) branch_sample_counts (nirs4all.controllers.data.merge.DisjointBranchAnalysis attribute) branch_sample_indices (nirs4all.controllers.data.merge.DisjointBranchAnalysis attribute) branch_sources (nirs4all.core.logging.context.StackContext attribute) branch_stack (nirs4all.core.logging.context.RunState attribute) branch_steps (nirs4all.pipeline.config.context.BestChainEntry attribute) branch_summary() (nirs4all.visualization.predictions.PredictionAnalyzer method) branch_type (nirs4all.controllers.data.merge.DisjointBranchAnalysis attribute) (nirs4all.controllers.models.stacking.branch_validator.BranchInfo attribute) BranchAnalysisResult (class in nirs4all.controllers.data.merge) BranchAnalyzer (class in nirs4all.visualization.analysis.branch) BranchComparisonEntry (class in nirs4all.api.inspector_views) BranchComparisonRequest (class in nirs4all.api.inspector_views) BranchComparisonResponse (class in nirs4all.api.inspector_views) BranchContext (class in nirs4all.core.logging.context) BranchController (class in nirs4all.controllers.data.branch) branches (nirs4all.api.inspector_views.BranchComparisonResponse attribute) (nirs4all.controllers.data.merge.DisjointMergeMetadata attribute) (nirs4all.pipeline.dagml.late_tuning.LateFusionTuningRecipe attribute) branches_with_models (nirs4all.controllers.data.merge.AsymmetryReport attribute) branches_without_models (nirs4all.controllers.data.merge.AsymmetryReport attribute) BranchInfo (class in nirs4all.controllers.models.stacking.branch_validator) BranchingError BranchSummary (class in nirs4all.visualization.analysis.branch) BranchTopologyResponse (class in nirs4all.api.inspector_views) BranchType (class in nirs4all.operators.data.merge) BROADCAST (nirs4all.operators.data.merge.MetaFeatureAdapter attribute) broadening_per_degree (nirs4all.synthesis.environmental.TemperatureEffectParams attribute) browse_folder() (in module nirs4all.data.config_parser) BufferedHandler (class in nirs4all.core.logging.handlers) BUILD (nirs4all.core.logging.events.EventType attribute) build() (nirs4all.pipeline.execution.builder.ExecutorBuilder method) build_base_bank() (in module nirs4all.operators.models.sklearn.aom_fast) build_chain_predictions_query() (in module nirs4all.pipeline.storage.store_queries) build_chain_summary_count_query() (in module nirs4all.pipeline.storage.store_queries) build_config_from_meta_model() (nirs4all.controllers.data.merge.MergeController class method) build_conversion_command() (in module nirs4all.workspace.compat) build_envelope() (in module nirs4all.pipeline.dagml.envelope) build_matrices() (nirs4all.visualization.chart_utils.matrix_builder.MatrixBuilder static method) build_meta_feature_info() (in module nirs4all.controllers.models.stacking.classification) build_prediction_availability() (in module nirs4all.pipeline.dagml.source_missing) build_prediction_query() (in module nirs4all.pipeline.storage.store_queries) build_relation_replay_manifest() (in module nirs4all.data.relation_replay_manifest) build_relation_table() (in module nirs4all.data.relations) build_score_dict() (nirs4all.visualization.chart_utils.matrix_builder.MatrixBuilder static method) build_score_dict_with_dynamic_partition() (nirs4all.visualization.chart_utils.matrix_builder.MatrixBuilder static method) build_single_model() (nirs4all.controllers.models.factory.ModelFactory static method) build_source_selection_step() (in module nirs4all.pipeline.dagml.structural_sources) build_top_chains_query() (in module nirs4all.pipeline.storage.store_queries) build_top_predictions_query() (in module nirs4all.pipeline.storage.store_queries) build_unique_source_names() (in module nirs4all.controllers.models.meta_model) builder() (in module nirs4all.api.generate) BuilderState (class in nirs4all.synthesis.builder) BUNDLE (nirs4all.pipeline.resolver.SourceType attribute) bundle_format_version (nirs4all.pipeline.bundle.loader.BundleMetadata attribute) bundle_id (nirs4all.pipeline.dagml.estimator.DagMLTrainingExecution attribute) (nirs4all.pipeline.dagml.raw_training_lowerer.RawArrayDagMLTrainingCompiler attribute) (nirs4all.pipeline.dagml.terminal_predict_lowerer.StrictMethodsTerminalPredictionExecution attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLPreparedTrainingContracts attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingRequestContracts attribute) BundleArtifactLoadError BundleArtifactProvider (class in nirs4all.pipeline.bundle.loader) BundleFormat (class in nirs4all.pipeline.bundle.generator) BundleGenerator (class in nirs4all.pipeline.bundle.generator) BundleLoader (class in nirs4all.pipeline.bundle.loader) BundleMetadata (class in nirs4all.pipeline.bundle.loader) bytes_estimate (nirs4all.pipeline.execution.step_cache.CachedStepState attribute)

C

CachedStepState (class in nirs4all.pipeline.execution.step_cache) CacheEntry (class in nirs4all.data.performance.cache) CacheKey (class in nirs4all.visualization.prediction_cache) calculate_balanced_counts() (nirs4all.controllers.data.balancing.BalancingCalculator static method) calculate_balanced_counts_value_aware() (nirs4all.controllers.data.balancing.BalancingCalculator static method) calculate_combination_band() (in module nirs4all.synthesis.wavenumber) calculate_overtone_position() (in module nirs4all.synthesis.wavenumber) calibrate() (in module nirs4all.api.calibrate) calibrate_replayed_predictions() (in module nirs4all.pipeline.dagml.conformal_contracts) calibrated (nirs4all.api.tuning.TunedSingleEstimatorConformalResult attribute) CalibratedPredictionBlock (class in nirs4all.pipeline.dagml.conformal_contracts) CalibratedRunResult (class in nirs4all.pipeline.dagml.conformal_contracts) calibration (nirs4all.api.native_session.NativeMethodsSession property) (nirs4all.api.tuning.NativeTuning attribute) calibration_cohort (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationArtifact attribute) calibration_data_fingerprint (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationArtifact attribute) calibration_fingerprint (nirs4all.pipeline.dagml.native_archive_replay.NativeArchiveConformalInterval attribute) calibration_groups (nirs4all.api.tuning.TuningConformalScoreCalibration attribute) calibration_metadata (nirs4all.api.tuning.TuningConformalScoreCalibration attribute) calibration_relations (nirs4all.pipeline.dagml.native_conformal_calibration.NativeConformalCalibrationReplay attribute) calibration_replay_source (nirs4all.pipeline.dagml.conformal_contracts.CalibratedRunResult property) calibration_sample_ids (nirs4all.api.tuning.TuningConformalScoreCalibration attribute) calibration_size (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationArtifact attribute) calibrator (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationArtifact attribute) call() (nirs4all.pipeline.dagml.host_hpo_candidate.HostHpoCandidate method) can_handle() (nirs4all.controllers.base.BaseController method) can_parse() (nirs4all.data.parsers.base.BaseParser method) (nirs4all.data.parsers.files_parser.FilesParser method) (nirs4all.data.parsers.files_parser.SourcesParser method) (nirs4all.data.parsers.files_parser.VariationsParser method) (nirs4all.data.parsers.folder_parser.FolderParser method) can_transition_to() (nirs4all.pipeline.run.Run method) CANCELLED (nirs4all.pipeline.run.RunStatus attribute) CandlestickCategory (class in nirs4all.api.inspector_views) CandlestickChart (class in nirs4all.visualization.charts.candlestick) CandlestickRequest (class in nirs4all.api.inspector_views) CandlestickResponse (class in nirs4all.api.inspector_views) canonical_grid (nirs4all.synthesis.fitter.DerivativeAwareForwardModelFitter attribute) (nirs4all.synthesis.fitter.ForwardModelFitter attribute) capabilities() (nirs4all.pipeline.dagml.native_client.DagMLNativeClient method) capability (nirs4all.controllers.splitters.split.ResolvedSplitGroups attribute) capture() (nirs4all.pipeline.dagml.cv_weight_transfer.CVWeightTransferStore method) (nirs4all.pipeline.execution.preprocessing.FoldPreprocessing class method) (nirs4all.pipeline.execution.preprocessing.PreprocessingReplay class method) capture_model() (nirs4all.pipeline.explainer.Explainer method) capture_torch_topology() (in module nirs4all.pipeline.dagml.node_runner) (in module nirs4all.pipeline.dagml.torch_topology_replay) capture_vote_evidence() (in module nirs4all.pipeline.dagml.native_vote) captured_target_transform() (in module nirs4all.pipeline.dagml.target_capture) captured_training_spec() (in module nirs4all.api.general_retrain) CapturedTargetTransform (class in nirs4all.pipeline.dagml.target_capture) CapturedTorchTopology (class in nirs4all.pipeline.dagml.torch_topology_replay) carbohydrate_band_intensity (nirs4all.synthesis.fitter.SpectralProperties attribute) CARBONYL (nirs4all.synthesis.procedural.FunctionalGroupType attribute) CARBOXYL (nirs4all.synthesis.procedural.FunctionalGroupType attribute) cardinalities() (nirs4all.data.raw_multisource.RawMultiSourceDataset method) (nirs4all.data.relations.NormalizedObservationTable method) CARTESIAN_REPRESENTATIONS (in module nirs4all.data.raw_multisource) CartesianStrategy (class in nirs4all.pipeline.config.generator) cas_number (nirs4all.synthesis.components.SpectralComponent attribute) cascade_to_augmented (nirs4all.operators.filters.report.FilteringReport attribute) (nirs4all.pipeline.dagml.exclude.FoldLocalExclusion attribute) CategoricalMode (class in nirs4all.data.schema.config) categories (nirs4all.api.inspector_views.CandlestickResponse attribute) category (nirs4all.data.schema.validation.error_codes.DiagnosticMessage property) (nirs4all.data.schema.validation.error_codes.ErrorCode attribute) (nirs4all.synthesis.components.SpectralComponent attribute) (nirs4all.synthesis.domains.DomainConfig attribute) (nirs4all.synthesis.fitter.DomainInference attribute) (nirs4all.synthesis.products.ProductTemplate attribute) category() (in module nirs4all.api.generate) category_variable (nirs4all.api.inspector_views.CandlestickRequest attribute) (nirs4all.api.inspector_views.CandlestickResponse attribute) CategoryGenerator (class in nirs4all.synthesis.products) cells (nirs4all.api.inspector_views.ConfusionMatrixResponse attribute) (nirs4all.api.inspector_views.HeatmapResponse attribute) center (nirs4all.synthesis.components.NIRBand attribute) center_noise_std (nirs4all.synthesis.fitter.SpectralProperties attribute) CH_COMBINATION (nirs4all.synthesis.environmental.SpectralRegion attribute) CH_FIRST_OVERTONE (nirs4all.synthesis.environmental.SpectralRegion attribute) chain (nirs4all.operators.models.sklearn.aom_fast.ScreeningCandidate attribute) chain_beam_width (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) chain_from_operators() (in module nirs4all.operators.models.sklearn.aom_fast) chain_id (nirs4all.api.inspector_views.FoldScoreEntry attribute) (nirs4all.api.inspector_views.HyperparameterPoint attribute) (nirs4all.api.inspector_views.ScatterPoint attribute) chain_ids (nirs4all.api.inspector_views.BiasVarianceEntry attribute) (nirs4all.api.inspector_views.BiasVarianceRequest attribute) (nirs4all.api.inspector_views.BranchComparisonEntry attribute) (nirs4all.api.inspector_views.CandlestickCategory attribute) (nirs4all.api.inspector_views.ConfusionMatrixRequest attribute) (nirs4all.api.inspector_views.FoldStabilityRequest attribute) (nirs4all.api.inspector_views.HeatmapCell attribute) (nirs4all.api.inspector_views.HistogramBin attribute) (nirs4all.api.inspector_views.ScatterRequest attribute) (nirs4all.api.inspector_views.TopologyNode attribute) chain_norm_F_sq (nirs4all.operators.models.sklearn.aom_fast.ScreeningCandidate attribute) chain_norm_F_sq() (nirs4all.operators.models.sklearn.aom_fast.LowRankBase method) chain_path (nirs4all.pipeline.storage.artifacts.utils.ExecutionPath attribute) chain_role_summary() (nirs4all.operators.models.sklearn.aom_fast.ChainGrammar method) ChainGenerationConfig (class in nirs4all.operators.models.sklearn.aom_fast) ChainGrammar (class in nirs4all.operators.models.sklearn.aom_fast) chains (nirs4all.api.inspector_views.InspectorDataResponse attribute) ChainStrategy (class in nirs4all.pipeline.config.generator) changed (nirs4all.data.serialization.serializer.ConfigDiff attribute) channel_bounds_ (nirs4all.operators.transforms.sequence.SequenceSummary attribute) channel_names_ (nirs4all.operators.transforms.sequence.SequenceSummary attribute) channel_widths() (nirs4all.operators.transforms.concat.FeatureConcat method) ChannelDropout (class in nirs4all.operators.augmentation.spectral) ChartAnnotator (class in nirs4all.visualization.chart_utils.annotator) check_cancellation() (in module nirs4all.pipeline.dagml.cancellation) check_dependency() (in module nirs4all.cli.installation_test) check_repetition_exclusivity() (in module nirs4all.data.relations) checked_prediction_features() (in module nirs4all.pipeline.dagml.source_missing) checked_source_presence() (in module nirs4all.pipeline.dagml.source_missing) checked_target_validity() (in module nirs4all.pipeline.dagml.source_missing) checked_vocabulary() (in module nirs4all.pipeline.dagml.methods_classification) checkpoint() (nirs4all.pipeline.dagml.host_search_checkpoint.HostSearchOptimizer method) checkpoints (nirs4all.pipeline.run.Run attribute) children (nirs4all.api.inspector_views.TopologyNode attribute) children_by_origin (nirs4all.pipeline.dagml.exclude.FoldLocalExclusion attribute) children_ids (nirs4all.visualization.pipeline_diagram.PipelineNode attribute) ci_lower (nirs4all.api.inspector_views.BranchComparisonEntry attribute) ci_upper (nirs4all.api.inspector_views.BranchComparisonEntry attribute) class_labels (nirs4all.controllers.models.stacking.classification.ClassificationInfo attribute) class_path (nirs4all.pipeline.config.portable_method_specs.PortableMethodSpec attribute) class_separation (nirs4all.synthesis.builder.BuilderState attribute) class_separation_method (nirs4all.synthesis.builder.BuilderState attribute) class_weights (nirs4all.synthesis.builder.BuilderState attribute) classes_ (nirs4all.pipeline.dagml.methods_multimodal.MethodsMultimodalRunResult attribute) (nirs4all.pipeline.dagml.target_capture.CapturedTargetTransform property) (nirs4all.sklearn.classifier.NIRSPipelineClassifier property) CLASSIFICATION (nirs4all.data.reduction.TaskCompatibility attribute) classification (nirs4all.pipeline.dagml.methods_multimodal.MethodsMultimodalRunResult attribute) classification() (in module nirs4all.api.generate) classification_info (nirs4all.controllers.models.stacking.classification.MetaFeatureInfo attribute) classification_output() (in module nirs4all.pipeline.dagml.structural_classification) classification_probability_blocks (nirs4all.pipeline.dagml.methods_multimodal.MethodsMultimodalRunResult attribute) classification_vocabulary() (in module nirs4all.pipeline.dagml.methods_classification) ClassificationFeatureExtractor (class in nirs4all.controllers.models.stacking.classification) ClassificationInfo (class in nirs4all.controllers.models.stacking.classification) classifier() (in module nirs4all.operators.models.tensorflow.legacy.inception_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.resnet_v2_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn) classifier_controller_for_graph() (in module nirs4all.pipeline.dagml.methods_classification) classifier_head() (in module nirs4all.pipeline.dagml.methods_classification) classifier_recipe() (in module nirs4all.pipeline.dagml.methods_classification) classify_wavelength_extended() (in module nirs4all.synthesis.wavenumber) classify_wavelength_zone() (in module nirs4all.synthesis.wavenumber) classname (nirs4all.controllers.models.components.identifier_generator.ModelIdentifiers attribute) ClassSeparationConfig (class in nirs4all.synthesis.targets) cleanup (nirs4all.pipeline.dagml.estimator.DagMLReplayExecution attribute) cleanup() (nirs4all.controllers.base.BaseController method) clear() (nirs4all.core.logging.handlers.BufferedHandler method) (nirs4all.data.performance.cache.DataCache method) (nirs4all.pipeline.dagml.cv_weight_transfer.CVWeightTransferStore method) (nirs4all.pipeline.storage.artifacts.artifact_loader.LRUCache method) (nirs4all.pipeline.storage.artifacts.artifact_registry.DependencyGraph method) (nirs4all.visualization.prediction_cache.PredictionCache method) clear_availability_cache() (in module nirs4all.utils.backend) clear_cache() (nirs4all.visualization.predictions.PredictionAnalyzer method) clear_presets() (in module nirs4all.pipeline.config.generator) close() (nirs4all.api.native_archive_training.NativeMethodsArchiveRunResult method) (nirs4all.api.native_result.NativeMethodsRunResult method) (nirs4all.api.native_session.NativeMethodsSession method) (nirs4all.core.logging.progress.ProgressBar method) (nirs4all.operators.models.multimodal.MultimodalClassifier method) (nirs4all.operators.models.multimodal.MultimodalRegressor method) (nirs4all.pipeline.dagml.cv_weight_transfer.CVWeightTransferStore method) (nirs4all.pipeline.dagml.host_hpo_candidate.HostHpoCandidate method) (nirs4all.pipeline.dagml.host_search_checkpoint.HostSearchOptimizer method) (nirs4all.pipeline.dagml.methods_multimodal.MethodsMultimodalRunResult method) (nirs4all.pipeline.dagml.methods_replay.MethodsN4mmReplayCallbacks method) (nirs4all.pipeline.portable_n4m_trained.PortableN4MTrainedPipeline method) close_all() (nirs4all.core.logging.progress.MultiLevelProgress method) closed (nirs4all.api.native_session.NativeMethodsSession property) closed_candidate_audit() (in module nirs4all.pipeline.dagml.typed_parallel) code (nirs4all.controllers.models.stacking.reconstructor.ValidationError attribute) (nirs4all.controllers.models.stacking.reconstructor.ValidationWarning attribute) (nirs4all.data.schema.validation.error_codes.DiagnosticMessage property) (nirs4all.data.schema.validation.error_codes.ErrorCode attribute) (nirs4all.data.schema.validation.validators.ValidationError attribute) (nirs4all.data.schema.validation.validators.ValidationWarning attribute) (nirs4all.pipeline.config.generator.ValidationError attribute) COLLECT (nirs4all.core.logging.events.EventType attribute) collect_features (nirs4all.operators.data.merge.MergeConfig attribute) collect_predictions (nirs4all.operators.data.merge.MergeConfig attribute) collect_vote_evidence() (in module nirs4all.pipeline.dagml.native_vote) collection_angle (nirs4all.synthesis.measurement_modes.ReflectanceConfig attribute) COLOR_CYAN (nirs4all.core.logging.progress.ProgressBar attribute) COLOR_DIM (nirs4all.core.logging.progress.ProgressBar attribute) COLOR_GREEN (nirs4all.core.logging.progress.ProgressBar attribute) COLOR_RESET (nirs4all.core.logging.progress.ProgressBar attribute) COLOR_YELLOW (nirs4all.core.logging.progress.ProgressBar attribute) column (nirs4all.data.schema.config.FoldConfig attribute) (nirs4all.data.schema.config.PartitionConfig attribute) (nirs4all.operators.data.repetition.RepetitionConfig attribute) column_mapping (nirs4all.controllers.data.merge.DisjointMergeMetadata attribute) (nirs4all.controllers.data.merge.DisjointMergeResult attribute) combination_amplitude_factor (nirs4all.synthesis.procedural.ProceduralComponentConfig attribute) combination_plan (nirs4all.data.raw_multisource.RepresentationPlan attribute) CombinationBandResult (class in nirs4all.synthesis.wavenumber) CombinationPlan (class in nirs4all.data.raw_multisource) combined_mode (nirs4all.operators.filters.report.FilteringReport attribute) COMBO (nirs4all.data.raw_multisource.RepresentationStage attribute) (nirs4all.data.raw_multisource.RepresentationUnitLevel attribute) (nirs4all.data.reduction.EvaluationScope attribute) (nirs4all.data.reduction.PredictionLevel attribute) (nirs4all.data.relations.UnitLevel attribute) (nirs4all.operators.data.merge.MetaRowDomain attribute) combo_reduction_plan (nirs4all.operators.data.merge.MetaFeaturePlan attribute) combo_selection (nirs4all.data.raw_multisource.CombinationPlan attribute) (nirs4all.data.raw_multisource.RepresentationPlan attribute) ComboRecord (class in nirs4all.data.relations) ComboSelection (class in nirs4all.data.raw_multisource) compact() (nirs4all.pipeline.storage.array_store.ArrayStore method) compact_bank() (in module nirs4all.operators.models.sklearn.aom_pls) compare() (nirs4all.visualization.analysis.branch.BranchAnalyzer method) compare_datasets() (in module nirs4all.synthesis.fitter) compare_filters() (nirs4all.operators.filters.report.FilteringReportGenerator method) compile_fit() (nirs4all.pipeline.dagml.estimator.DagMLTrainingCompiler method) (nirs4all.pipeline.dagml.raw_training_lowerer.RawArrayDagMLTrainingCompiler method) (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingContractFactoryCompiler method) (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingRequestCompiler method) (nirs4all.pipeline.dagml.training_compiler.PreparedDagMLTrainingCompiler method) compile_methods_conformal_calibration_replay() (in module nirs4all.pipeline.dagml.native_conformal_calibration) compile_pipeline_objective() (in module nirs4all.pipeline.dagml.pipeline_objective_compiler) compile_prepared_training_contracts() (in module nirs4all.pipeline.dagml.training_compiler) compile_replay() (nirs4all.pipeline.dagml.estimator.DagMLReplayCompiler method) (nirs4all.pipeline.dagml.raw_replay_lowerer.RawArrayMethodsPortableRefitReplayCompiler method) compile_with_dagml() (in module nirs4all.pipeline.dagml_bridge) CompiledPipelineObjective (class in nirs4all.pipeline.dagml.pipeline_objective_compiler) COMPLETE (nirs4all.core.logging.events.EventType attribute) complete_pipeline() (nirs4all.pipeline.storage.store_protocol.WorkspaceStoreProtocol method) complete_run() (nirs4all.pipeline.storage.store_protocol.WorkspaceStoreProtocol method) COMPLETED (nirs4all.pipeline.run.RunStatus attribute)

completed_at (nirs4all.pipeline.run.Run attribute) completed_results (nirs4all.pipeline.run.RunSummary attribute) complexity (nirs4all.synthesis.builder.BuilderState attribute) (nirs4all.synthesis.domains.DomainConfig attribute) (nirs4all.synthesis.fitter.FittedParameters attribute) (nirs4all.synthesis.products.ProductGenerator attribute) (nirs4all.synthesis.sources.SourceConfig attribute) component (nirs4all.synthesis.products.ComponentVariation attribute) component_info() (in module nirs4all.synthesis.components) component_library (nirs4all.synthesis.builder.BuilderState attribute) component_names (nirs4all.synthesis.builder.BuilderState attribute) (nirs4all.synthesis.fitter.ComponentFitResult attribute) (nirs4all.synthesis.fitter.OptimizedFitResult attribute) (nirs4all.synthesis.products.ProductTemplate property) component_observation_ids (nirs4all.data.relations.ComboRecord attribute) (nirs4all.data.relations.ObservationRecord attribute) component_shrinkage_gamma (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) component_weights (nirs4all.synthesis.domains.DomainConfig attribute) ComponentFitResult (class in nirs4all.synthesis.fitter) ComponentFitter (class in nirs4all.synthesis.fitter) components (nirs4all.analysis.results.TransferResult attribute) (nirs4all.synthesis.fitter.DerivativeAwareForwardModelFitter attribute) (nirs4all.synthesis.fitter.ForwardModelFitter attribute) (nirs4all.synthesis.fitter.PCAVarianceParams attribute) (nirs4all.synthesis.products.ProductTemplate attribute) (nirs4all.synthesis.sources.SourceConfig attribute) ComponentVariation (class in nirs4all.synthesis.products) composed (nirs4all.operators.models.sklearn.aom_fast.OperatorChain property) ComposedOperator (class in nirs4all.operators.models.sklearn.aom_pls) CompositeFilter (class in nirs4all.operators.filters.base) compression (nirs4all.synthesis.exporter.ExportConfig attribute) compute() (nirs4all.synthesis.components.NIRBand method) (nirs4all.synthesis.components.SpectralComponent method) compute_adversarial_validation_auc() (in module nirs4all.synthesis.validation) compute_as (nirs4all.synthesis.products.ComponentVariation attribute) compute_baseline_curvature() (in module nirs4all.synthesis.validation) compute_correlation_length() (in module nirs4all.synthesis.validation) compute_data_hash() (in module nirs4all.utils.hashing) compute_derivative_statistics() (in module nirs4all.synthesis.validation) compute_distribution_overlap() (in module nirs4all.synthesis.validation) compute_effective_groups() (in module nirs4all.controllers.splitters.split) compute_hash() (in module nirs4all.pipeline.storage.artifacts.artifact_persistence) compute_input_shape() (nirs4all.controllers.models.factory.ModelFactory static method) compute_peak_density() (in module nirs4all.synthesis.validation) compute_snr() (in module nirs4all.synthesis.validation) compute_spectral_properties() (in module nirs4all.synthesis.fitter) compute_spectral_realism_scorecard() (in module nirs4all.synthesis.validation) COMPUTED (nirs4all.synthesis.products.VariationType attribute) CONCAT (nirs4all.operators.data.merge.SourceMergeStrategy attribute) concat_source (nirs4all.pipeline.config.context.DataSelector attribute) ConcatAugmentationController (class in nirs4all.controllers.data.concat_transform) concentration_method (nirs4all.synthesis.builder.BuilderState attribute) concentration_priors (nirs4all.synthesis.domains.DomainConfig attribute) ConcentrationPrior (class in nirs4all.synthesis.domains) concentrations (nirs4all.synthesis.fitter.ComponentFitResult attribute) (nirs4all.synthesis.fitter.OptimizedFitResult attribute) confidence (nirs4all.data.detection.detector.DetectionResult attribute) (nirs4all.synthesis.fitter.DomainInference attribute) (nirs4all.synthesis.fitter.InstrumentInference attribute) (nirs4all.synthesis.fitter.PreprocessingInference attribute) config (nirs4all.data.parsers.base.ParserResult attribute) (nirs4all.pipeline.run.Run attribute) CONFIG_LOAD (nirs4all.core.logging.events.EventType attribute) config_name (nirs4all.data.predictions.PredictionResult property) (nirs4all.pipeline.config.context.BestChainEntry attribute) config_path (nirs4all.data.schema.validation.error_codes.DiagnosticReport attribute) config_show_schema() (in module nirs4all.cli.commands.config) config_validate() (in module nirs4all.cli.commands.config) ConfigDiff (class in nirs4all.data.serialization.serializer) ConfigSerializer (class in nirs4all.data.serialization.serializer) configure_logging() (in module nirs4all.core.logging.config) configure_progress() (in module nirs4all.core.logging.progress) ConfigValidationError ConfigValidator (class in nirs4all.data.schema.validation.validators) conflicts_resolved (nirs4all.data.predictions.MergeReport attribute) conformal_calibration (nirs4all.api.tuning.TuningScoreData attribute) conformal_coverage (nirs4all.api.tuning.TuningScoreData attribute) conformal_finite_sample_quantile() (in module nirs4all.pipeline.dagml.conformal_contracts) conformal_guarantee_status (nirs4all.api.tuning.TunedSingleEstimatorConformalResult property) (nirs4all.pipeline.dagml.conformal_contracts.CalibratedRunResult property) (nirs4all.pipeline.dagml.native_archive_replay.NativeArchivePrediction attribute) conformal_guarantee_status() (in module nirs4all.pipeline.dagml.conformal_contracts) conformal_metrics (nirs4all.api.robustness.RobustnessScenarioResult attribute) (nirs4all.api.robustness.RobustnessSliceResult attribute) conformal_metrics() (in module nirs4all.api.calibrate) conformal_presentation (nirs4all.pipeline.dagml.native_archive_replay.NativeArchivePrediction attribute) ConformalCalibrationArtifact (class in nirs4all.pipeline.dagml.conformal_contracts) ConformalCalibrationCohortManifest (class in nirs4all.pipeline.dagml.conformal_contracts) ConformalCalibrationCohortRow (class in nirs4all.pipeline.dagml.conformal_contracts) ConformalCalibrationData (class in nirs4all.api.calibrate) ConformalCalibrationSpec (class in nirs4all.pipeline.dagml.conformal_contracts) ConformalIntervalBlock (class in nirs4all.pipeline.dagml.conformal_contracts) ConformalMetricSet (class in nirs4all.pipeline.dagml.conformal_contracts) ConformalStoreManifest (class in nirs4all.pipeline.dagml.conformal_store) ConfusionMatrixCell (class in nirs4all.api.inspector_views) ConfusionMatrixChart (class in nirs4all.visualization.charts.confusion_matrix) ConfusionMatrixRequest (class in nirs4all.api.inspector_views) ConfusionMatrixResponse (class in nirs4all.api.inspector_views) constrained_operator_survivor_sequences() (in module nirs4all.pipeline.dagml_bridge) consumed_data_views() (nirs4all.pipeline.dagml.fixed_cohort_views.FixedCohortTaskViews method) contains() (nirs4all.pipeline.storage.artifacts.artifact_loader.LRUCache method) content_hash (nirs4all.pipeline.execution.result.ArtifactMeta attribute) (nirs4all.pipeline.execution.step_cache.CachedStepState attribute) content_hash() (nirs4all.data.multimodal.MultimodalSpectroDataset method) (nirs4all.data.raw_multisource.RawMultiSourceDataset method) context (nirs4all.data.schema.validation.error_codes.DiagnosticMessage attribute) (nirs4all.pipeline.execution.preprocessing.PreprocessingReplay attribute) contract (nirs4all.api.advanced_capabilities.AdvancedApiCapabilityDecision attribute) contract_manifest (nirs4all.pipeline.dagml.native_client.DagMLNativeCapabilities attribute) contracts (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingRequestCompiler attribute) (nirs4all.pipeline.dagml.training_compiler.PreparedDagMLTrainingCompiler attribute) controller_for_graph() (in module nirs4all.pipeline.dagml.methods_multimodal) controller_id (nirs4all.pipeline.dagml.cv_weight_transfer.TransferIdentity attribute) controller_sources() (in module nirs4all.pipeline.dagml.methods_multimodal) Conv_1D_Block() (in module nirs4all.operators.models.tensorflow.legacy.inception_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.resnet_v2_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.vgg_1d_cnn) conv_block() (in module nirs4all.operators.models.tensorflow.legacy.resnet_v2_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn) CONV_LSTM() (in module nirs4all.operators.models.tensorflow.generic) conversion_command (nirs4all.workspace.compat.WorkspaceFormatInfo attribute) conversion_required (nirs4all.workspace.compat.WorkspaceFormatInfo attribute) ConversionRequired convert_bandwidth_to_wavelength() (in module nirs4all.synthesis.wavenumber) convert_bandwidth_to_wavenumber() (in module nirs4all.synthesis.wavenumber) COPY (nirs4all.operators.data.merge.BranchType attribute) copy() (nirs4all.pipeline.config.context.DataSelector method) (nirs4all.pipeline.config.context.PipelineState method) (nirs4all.pipeline.config.context.StepMetadata method) copy_from_pipeline() (nirs4all.pipeline.storage.library.PipelineLibrary method) copy_general_archive() (in module nirs4all.pipeline.dagml.general_archive) core (nirs4all.pipeline.dagml.core_archive_replay.CoreArchiveValidation attribute) CoreArchiveDependencyError CoreArchiveReplayError CoreArchiveValidation (class in nirs4all.pipeline.dagml.core_archive_replay) CORRELATED (nirs4all.synthesis.products.VariationType attribute) correlated_with (nirs4all.synthesis.products.ComponentVariation attribute) correlation (nirs4all.synthesis.products.ComponentVariation attribute) correlation_group (nirs4all.synthesis.components.SpectralComponent attribute) CORRELATION_LENGTH (nirs4all.synthesis.validation.RealismMetric attribute) correlation_length_overlap (nirs4all.synthesis.validation.SpectralRealismScore attribute) correlation_with_target (nirs4all.synthesis.sources.SourceConfig attribute) cos (nirs4all.synthesis.accelerated.AcceleratedArrays attribute) count (nirs4all.api.inspector_views.BranchComparisonEntry attribute) (nirs4all.api.inspector_views.CandlestickCategory attribute) (nirs4all.api.inspector_views.ConfusionMatrixCell attribute) (nirs4all.api.inspector_views.HeatmapCell attribute) (nirs4all.api.inspector_views.HistogramBin attribute) count() (nirs4all.pipeline.config.generator.CartesianStrategy method) (nirs4all.pipeline.config.generator.ChainStrategy method) (nirs4all.pipeline.config.generator.ExpansionStrategy method) (nirs4all.pipeline.config.generator.GridStrategy method) (nirs4all.pipeline.config.generator.LogRangeStrategy method) (nirs4all.pipeline.config.generator.OrStrategy method) (nirs4all.pipeline.config.generator.RangeStrategy method) (nirs4all.pipeline.config.generator.SampleStrategy method) (nirs4all.pipeline.config.generator.ZipStrategy method) count_combinations() (in module nirs4all.pipeline.config.generator) count_with (nirs4all.api.inspector_views.PreprocessingImpactEntry attribute) count_without (nirs4all.api.inspector_views.PreprocessingImpactEntry attribute) coverage (nirs4all.api.tuning.TuningCalibration attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationSpec attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalIntervalBlock attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalMetricSet attribute) (nirs4all.pipeline.dagml.native_archive_replay.NativeArchiveConformalInterval attribute) coverage_gap (nirs4all.pipeline.dagml.conformal_contracts.ConformalMetricSet attribute) coverages (nirs4all.pipeline.dagml.conformal_contracts.CalibratedPredictionBlock property) (nirs4all.pipeline.dagml.conformal_contracts.SplitConformalCalibrator attribute) cpu_threads (nirs4all.pipeline.dagml.resources.DagMLExecutionResources attribute) create() (nirs4all.data.schema.validation.error_codes.DiagnosticBuilder method) create_accelerated_arrays() (in module nirs4all.synthesis.accelerated) create_atr_simulator() (in module nirs4all.synthesis.measurement_modes) create_best_model_memory() (nirs4all.controllers.models.tensorflow.config.TensorFlowCallbackFactory static method) create_callbacks() (nirs4all.controllers.models.tensorflow.config.TensorFlowCallbackFactory static method) create_cyclic_lr() (nirs4all.controllers.models.tensorflow.config.TensorFlowCallbackFactory static method) create_dataset() (nirs4all.synthesis.sources.MultiSourceGenerator method) create_domain_aware_library() (in module nirs4all.synthesis.domains) create_early_stopping() (nirs4all.controllers.models.tensorflow.config.TensorFlowCallbackFactory static method) create_matched_generator() (nirs4all.synthesis.fitter.RealDataFitter method) create_optimizer() (nirs4all.controllers.models.tensorflow.config.TensorFlowCompilationConfig static method) create_reduce_lr_on_plateau() (nirs4all.controllers.models.tensorflow.config.TensorFlowCallbackFactory static method) create_reflectance_simulator() (in module nirs4all.synthesis.measurement_modes) create_report() (nirs4all.operators.filters.report.FilteringReportGenerator method) create_schema() (in module nirs4all.pipeline.storage.store_schema) create_synthetic_matching_benchmark() (in module nirs4all.synthesis.benchmarks) create_transmittance_simulator() (in module nirs4all.synthesis.measurement_modes) created_at (nirs4all.pipeline.bundle.loader.BundleMetadata attribute) (nirs4all.pipeline.run.Run attribute) CropTransformer (class in nirs4all.operators.transforms.features) CrossBranchStackingError CrossValidatorController (class in nirs4all.controllers.splitters.split) crystal_material (nirs4all.synthesis.measurement_modes.ATRConfig attribute) crystal_refractive_index (nirs4all.synthesis.measurement_modes.ATRConfig attribute) CSVLoader (class in nirs4all.data.loaders.csv_loader_new) CSVVariationGenerator (class in nirs4all.synthesis.exporter) CUPY (nirs4all.synthesis.accelerated.AcceleratorBackend attribute) current_branch (nirs4all.core.logging.context.RunState property) current_phase (nirs4all.core.logging.context.RunState attribute) curvature_std (nirs4all.synthesis.fitter.OperatorVarianceParams attribute) (nirs4all.synthesis.fitter.SpectralProperties attribute) curvature_type (nirs4all.synthesis.fitter.EdgeArtifactInference attribute) CUSTOM (nirs4all.data.reduction.ReductionMethod attribute) custom_name (nirs4all.data.reduction.ReductionPlan attribute) custom_params (nirs4all.synthesis.builder.BuilderState attribute) custom_regions (nirs4all.synthesis.environmental.TemperatureConfig attribute) Custom_Residuals() (in module nirs4all.operators.models.tensorflow.generic) Custom_VG_Residuals() (in module nirs4all.operators.models.tensorflow.generic) Custom_VG_Residuals2() (in module nirs4all.operators.models.tensorflow.generic) custom_wavelengths (nirs4all.synthesis.builder.BuilderState attribute) customizable_decon() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) customizable_decon_classification() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) customizable_nicon() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) customizable_nicon_classification() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) CustomSplitter (class in nirs4all.operators.splitters.splitters) cutoff_wavelength (nirs4all.synthesis.detectors.DetectorSpectralResponse attribute) cuvette_material (nirs4all.synthesis.measurement_modes.TransmittanceConfig attribute) cv (nirs4all.pipeline.dagml.rt.RtRunRequest attribute) cv_entry (nirs4all.api.result.LazyModelRefitResult property) (nirs4all.api.result.ModelRefitResult attribute) cv_folds (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) (nirs4all.pipeline.run.RunConfig attribute) cv_n_components (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) cv_score (nirs4all.api.result.LazyModelRefitResult property) (nirs4all.api.result.ModelRefitResult attribute) cv_strategy (nirs4all.pipeline.run.RunConfig attribute) cv_weight_transfer_request() (in module nirs4all.pipeline.dagml.training_controls) CVWeightTransferStore (class in nirs4all.pipeline.dagml.cv_weight_transfer)

D

dagml_module (nirs4all.pipeline.dagml.raw_replay_lowerer.RawArrayMethodsPortableRefitReplayCompiler attribute) (nirs4all.pipeline.dagml.raw_training_lowerer.RawArrayDagMLTrainingCompiler attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingRequestCompiler attribute) DagMLAutoGluonEstimator (class in nirs4all.pipeline.dagml.autogluon_estimator) DagMLAutoTransferPreprocessor (class in nirs4all.pipeline.dagml.auto_transfer) DagMLCalibrationIdentityFrame (class in nirs4all.pipeline.dagml.fit_identity) DagMLExecutionResources (class in nirs4all.pipeline.dagml.resources) DagMlExportRefusal DagMLFitIdentityFrame (class in nirs4all.pipeline.dagml.estimator) DagMLFrameworkEstimator (class in nirs4all.pipeline.dagml.framework_estimator) DagMlMigrationRequired DagMLNativeCapabilities (class in nirs4all.pipeline.dagml.native_client) DagMLNativeClient (class in nirs4all.pipeline.dagml.native_client) DagMLNativeCoverageError DagMLPipelineEstimator (class in nirs4all.pipeline.dagml.estimator) DagMlPipelinePreflightRequired DagMLPredictIdentityFrame (class in nirs4all.pipeline.dagml.estimator) DagMLPreparedTrainingContracts (class in nirs4all.pipeline.dagml.training_compiler) DagMLReplayCompiler (class in nirs4all.pipeline.dagml.estimator) DagMLReplayExecution (class in nirs4all.pipeline.dagml.estimator) DagMlStatefulConcatTransformMigrationRequired DagMLTrainingCompiler (class in nirs4all.pipeline.dagml.estimator) DagMLTrainingContractFactoryCompiler (class in nirs4all.pipeline.dagml.training_compiler) DagMLTrainingExecution (class in nirs4all.pipeline.dagml.estimator) DagMLTrainingRequestCompiler (class in nirs4all.pipeline.dagml.training_compiler) DagMLTrainingRequestContracts (class in nirs4all.pipeline.dagml.training_compiler) DagMLTuningNotImplementedError DagMlUnavailable DagMlUnsupported DagRunCancelled data (nirs4all.data.performance.cache.CacheEntry attribute) DATA (nirs4all.data.schema.validation.error_codes.ErrorCategory attribute) data_bindings_for() (in module nirs4all.pipeline.dagml.cli_runner) data_bindings_for_fitted_x_chain() (in module nirs4all.pipeline.dagml.cli_runner) data_bindings_for_nodes() (in module nirs4all.pipeline.dagml.cli_runner) data_content_fingerprint (nirs4all.pipeline.dagml.estimator.DagMLPredictIdentityFrame attribute) (nirs4all.pipeline.dagml.fit_identity.DagMLCalibrationIdentityFrame attribute) data_envelopes (nirs4all.pipeline.dagml.estimator.DagMLReplayExecution attribute) (nirs4all.pipeline.dagml.estimator.DagMLTrainingExecution attribute) (nirs4all.pipeline.dagml.terminal_predict_lowerer.StrictMethodsTerminalPredictionExecution attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLPreparedTrainingContracts attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingRequestContracts attribute) data_plan() (nirs4all.data.multimodal.MultimodalSpectroDataset method) data_schema() (nirs4all.data.multimodal.MultimodalSpectroDataset method) DataCache (class in nirs4all.data.performance.cache) DataSelector (class in nirs4all.pipeline.config.context) dataset (nirs4all.api.calibrate.ConformalCalibrationData attribute) (nirs4all.api.tuning.TuningScoreData attribute) (nirs4all.api.tuning.TuningWinner attribute) (nirs4all.pipeline.execution.preprocessing.FoldPreprocessing attribute) dataset_diff() (in module nirs4all.cli.commands.dataset) dataset_export() (in module nirs4all.cli.commands.dataset) dataset_inspect() (in module nirs4all.cli.commands.dataset) dataset_name (nirs4all.api.inspector_views.BranchComparisonRequest attribute) (nirs4all.api.inspector_views.CandlestickRequest attribute) (nirs4all.api.inspector_views.HeatmapRequest attribute) (nirs4all.api.inspector_views.HyperparameterRequest attribute) (nirs4all.api.inspector_views.PreprocessingImpactRequest attribute) (nirs4all.api.tuning.TuningWinner attribute) (nirs4all.data.parsers.base.ParserResult attribute) (nirs4all.data.predictions.PredictionResult property) (nirs4all.operators.filters.report.FilteringReport attribute) (nirs4all.synthesis.validation.DatasetComparisonResult attribute) dataset_ref (nirs4all.pipeline.dagml.rt.RtRunRequest attribute) dataset_statistics() (in module nirs4all.api.dataset_inspection) dataset_validate() (in module nirs4all.cli.commands.dataset) DatasetComparisonResult (class in nirs4all.synthesis.validation) DatasetDocumentLimits (class in nirs4all.api.dataset_documents) DatasetExporter (class in nirs4all.synthesis.exporter) DatasetInfo (class in nirs4all.pipeline.run) datasets (nirs4all.pipeline.run.Run attribute) datasets_merged (nirs4all.data.predictions.MergeReport attribute) DeadBandAugmenter (class in nirs4all.operators.augmentation.synthesis) decimal_separator (nirs4all.data.detection.detector.DetectionResult attribute) decision_function() (nirs4all.operators.models.multimodal.MultimodalClassifier method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeClassifier method) declared_cardinalities() (nirs4all.data.relations.SampleRelationPlan method) declared_classifier_topologies() (in module nirs4all.pipeline.dagml.structural_classification) DECLARED_REPRESENTATIONS (in module nirs4all.data.raw_multisource) declared_topologies() (in module nirs4all.pipeline.dagml.structural_topology) declared_torch_topologies() (in module nirs4all.pipeline.dagml.structural_torch) decode() (nirs4all.pipeline.dagml.target_capture.CapturedTargetTransform method) decode_constructor_value() (in module nirs4all.pipeline.dagml.operator_parameters) decode_labels() (in module nirs4all.pipeline.dagml.methods_classification) decon() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) decon_classification() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) decon_layer_classification() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) decon_Sep() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) decon_Sep_classification() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) decon_set() (in module nirs4all.operators.transforms.presets) DEDUPLICATE (nirs4all.core.logging.events.EventType attribute) default_bank() (in module nirs4all.operators.models.sklearn.aom_pls) default_conversion_output() (in module nirs4all.workspace.compat) default_grammar() (in module nirs4all.operators.models.sklearn.aom_fast) DEFAULT_MAX_STACKING_DEPTH (in module nirs4all.pipeline.execution.refit.stacking_refit) default_operator_bank() (in module nirs4all.operators.models.sklearn.aom_pls) default_pipeline (nirs4all.operators.data.merge.SourceBranchConfig attribute) default_target (nirs4all.synthesis.products.ProductTemplate attribute) defaults (nirs4all.pipeline.config.portable_method_specs.PortableMethodSpec attribute) degradation_rows() (nirs4all.api.robustness.RobustnessReport method) delete_batch() (nirs4all.pipeline.storage.array_store.ArrayStore method) delete_dataset() (nirs4all.pipeline.storage.array_store.ArrayStore method) delete_template() (nirs4all.pipeline.storage.library.PipelineLibrary method) delimiter (nirs4all.data.detection.detector.DetectionResult attribute) DELIMITERS (nirs4all.data.detection.detector.AutoDetector attribute) delta_temperature (nirs4all.synthesis.environmental.TemperatureConfig property) denominator (nirs4all.operators.models.sklearn.aom_fast.ScreeningCandidate attribute) DependencyGraph (class in nirs4all.pipeline.storage.artifacts.artifact_registry) depth (nirs4all.api.inspector_views.TopologyNode attribute) (nirs4all.core.logging.context.BranchContext attribute)

depth() (nirs4all.operators.models.sklearn.aom_fast.OperatorChain method) depth_multiplier (nirs4all.operators.models.jax.nicon.DepthwiseConv1D attribute) (nirs4all.operators.models.jax.nicon.SeparableConv1D attribute) DepthwiseConv1D (class in nirs4all.operators.models.jax.nicon) (class in nirs4all.operators.models.pytorch.nicon) Derivate (class in nirs4all.operators.transforms.scalers) derivate() (in module nirs4all.operators.transforms.scalers) derivative_ks_pvalue (nirs4all.synthesis.validation.SpectralRealismScore attribute) derivative_order (nirs4all.synthesis.fitter.DerivativeAwareForwardModelFitter attribute) DERIVATIVE_STATISTICS (nirs4all.synthesis.validation.RealismMetric attribute) DerivativeAwareForwardModelFitter (class in nirs4all.synthesis.fitter) derived_unit_id (nirs4all.data.reduction.PredictionUnitId attribute) (nirs4all.data.relations.ComboRecord attribute) (nirs4all.data.relations.ObservationRecord attribute) describe() (in module nirs4all.pipeline.dagml.process_adapter) description (nirs4all.pipeline.run.TemplateInfo attribute) (nirs4all.synthesis.domains.DomainConfig attribute) (nirs4all.synthesis.products.ProductTemplate attribute) descriptor_statistics() (in module nirs4all.analysis.playground_metrics) deserialize_config() (in module nirs4all.data.serialization.serializer) detach() (nirs4all.api.native_result.NativeMethodsRunResult method) detach_native_training_result() (nirs4all.pipeline.dagml.estimator.DagMLPipelineEstimator method) details (nirs4all.controllers.models.stacking.reconstructor.ValidationError attribute) (nirs4all.controllers.models.stacking.reconstructor.ValidationWarning attribute) (nirs4all.synthesis.validation.MetricResult attribute) detect() (nirs4all.controllers.models.stacking.classification.TaskTypeDetector method) (nirs4all.data.detection.detector.AutoDetector method) (nirs4all.data.signal_type.SignalTypeDetector method) detect_best_backend() (in module nirs4all.synthesis.accelerated) detect_core_archive_version() (in module nirs4all.pipeline.dagml.core_archive_replay) detect_disjoint_branches() (in module nirs4all.controllers.data.merge) detect_file_parameters() (in module nirs4all.data.detection.detector) detect_framework() (nirs4all.controllers.models.factory.ModelFactory static method) detect_repetition_mechanisms() (in module nirs4all.data.relations) detect_signal_type() (in module nirs4all.data.detection.detector) detect_stacking_level() (in module nirs4all.controllers.models.stacking.multilevel) detect_task_type() (in module nirs4all.core.task_detection) detected_components (nirs4all.synthesis.fitter.DomainInference attribute) (nirs4all.synthesis.fitter.FittedParameters attribute) detected_preprocessing (nirs4all.synthesis.fitter.ComponentFitter attribute) (nirs4all.synthesis.fitter.OptimizedComponentFitter attribute) DetectionResult (class in nirs4all.data.detection.detector) detector_model (nirs4all.synthesis.fitter.EdgeArtifactInference attribute) detector_type (nirs4all.synthesis.detectors.DetectorConfig attribute) (nirs4all.synthesis.detectors.DetectorSpectralResponse attribute) (nirs4all.synthesis.fitter.InstrumentInference attribute) DetectorConfig (class in nirs4all.synthesis.detectors) DetectorModel (class in nirs4all.operators.augmentation.edge_artifacts) DetectorRollOffAugmenter (class in nirs4all.operators.augmentation.edge_artifacts) DetectorSimulator (class in nirs4all.synthesis.detectors) DetectorSpectralResponse (class in nirs4all.synthesis.detectors) DetectorType (class in nirs4all.synthesis.instruments) DETERMINISTIC_ALL (nirs4all.data.raw_multisource.ComboSelection attribute) detrend() (in module nirs4all.operators.transforms.signal) DetrendProjectionOperator (class in nirs4all.operators.models.sklearn.aom_pls) DiagnosticBuilder (class in nirs4all.data.schema.validation.error_codes) DiagnosticMessage (class in nirs4all.data.schema.validation.error_codes) DiagnosticReport (class in nirs4all.data.schema.validation.error_codes) diagnostics (nirs4all.analysis.playground_dataset.PlaygroundDatasetSelection attribute) (nirs4all.pipeline.dagml.estimator.DagMLReplayExecution attribute) (nirs4all.pipeline.dagml.estimator.DagMLTrainingExecution attribute) (nirs4all.pipeline.dagml.pipeline_objective.PipelineObjectiveResult attribute) (nirs4all.pipeline.dagml.rt.RtResult attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLPreparedTrainingContracts attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingRequestContracts attribute) DICT (nirs4all.operators.data.merge.SourceMergeStrategy attribute) diff() (nirs4all.data.serialization.serializer.ConfigSerializer method) diff_configs() (in module nirs4all.data.serialization.serializer) (in module nirs4all.pipeline.config.generator) DIMENSION_BOUND_PARAMS (in module nirs4all.pipeline.analysis.shape_inference) DIODE_ARRAY (nirs4all.synthesis.instruments.InstrumentCategory attribute) DiPLS (class in nirs4all.operators.models.sklearn.dipls) DIRECT (nirs4all.operators.data.merge.MetaFeatureAdapter attribute) (nirs4all.pipeline.steps.parser.StepType attribute) direction (nirs4all.api.tuning.NativeTuning attribute) (nirs4all.pipeline.dagml.pipeline_objective.PipelineObjectiveResult attribute) DisjointBranchAnalysis (class in nirs4all.controllers.data.merge) DisjointBranchInfo (class in nirs4all.controllers.data.merge) DisjointMergeMetadata (class in nirs4all.controllers.data.merge) DisjointMergeResult (class in nirs4all.controllers.data.merge) DisjointSelectionCriterion (class in nirs4all.operators.data.merge) display_name (nirs4all.controllers.models.components.identifier_generator.ModelIdentifiers attribute) distribution (nirs4all.api.robustness.RobustnessScenarioSpec attribute) (nirs4all.synthesis.domains.ConcentrationPrior attribute) (nirs4all.synthesis.scattering.ParticleSizeDistribution attribute) (nirs4all.synthesis.sources.SourceConfig attribute) diversity_topk() (in module nirs4all.operators.models.sklearn.aom_fast) DiversitySelector (class in nirs4all.operators.models.selection) DMD (nirs4all.synthesis.instruments.MonochromatorType attribute) documentation_url (nirs4all.data.schema.validation.error_codes.ErrorCode attribute) domain (nirs4all.synthesis.benchmarks.BenchmarkDatasetInfo attribute) (nirs4all.synthesis.products.ProductTemplate attribute) domain_inference (nirs4all.synthesis.fitter.FittedParameters attribute) domain_name (nirs4all.synthesis.fitter.DomainInference attribute) domain_weights (nirs4all.synthesis.prior.NIRSPriorConfig attribute) DomainCategory (class in nirs4all.synthesis.domains) DomainConfig (class in nirs4all.synthesis.domains) DomainInference (class in nirs4all.synthesis.fitter) dot (nirs4all.synthesis.accelerated.AcceleratedArrays attribute) DROP (nirs4all.data.relations.MissingRepetitionPolicy attribute) (nirs4all.operators.data.repetition.UnequelRepsStrategy attribute) DROP_BRANCH (nirs4all.data.relations.MissingSourcePolicy attribute) (nirs4all.operators.data.merge.MissingPredictionPolicy attribute) DROP_INCOMPLETE (nirs4all.data.relations.MissingSourcePolicy attribute) (nirs4all.operators.data.merge.MissingPredictionPolicy attribute) dropout (nirs4all.operators.models.jax.nicon.TransformerBlock attribute) dropped_features (nirs4all.data.meta_features.AlignedMetaFeatures attribute) dropped_models (nirs4all.controllers.data.merge.DisjointBranchInfo attribute) dropped_units (nirs4all.data.meta_features.AlignedMetaFeatures attribute) dumb_and_dumber_set() (in module nirs4all.operators.transforms.presets) dumb_set() (in module nirs4all.operators.transforms.presets) dumb_set_2D() (in module nirs4all.operators.transforms.presets) DummyController (class in nirs4all.controllers.flow.dummy) DuplicationBranchMergeTransformer (class in nirs4all.pipeline.dagml.run_paths) DuplicationFusionEstimator (class in nirs4all.pipeline.dagml.run_paths) duration_ms (nirs4all.core.logging.events.LogEvent attribute) (nirs4all.visualization.pipeline_diagram.PipelineNode attribute) DynamicModel (class in nirs4all.operators.models.jax.nicon)

E

E100 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E101 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E102 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E103 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E104 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E200 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E201 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E202 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E203 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E204 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E300 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E301 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E302 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E303 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E304 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E400 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E401 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E402 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E403 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E500 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E501 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E502 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E503 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E600 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E601 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E602 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E700 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E701 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E702 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E703 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E704 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E800 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E801 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E802 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) E900 (nirs4all.data.schema.validation.error_codes.ErrorRegistry attribute) edge_artifact_inference (nirs4all.synthesis.fitter.FittedParameters attribute) edge_artifacts_config (nirs4all.synthesis.builder.BuilderState attribute) (nirs4all.synthesis.fitter.FittedParameters attribute) edge_curvature_asymmetry (nirs4all.synthesis.fitter.SpectralProperties attribute) edge_curvature_intensity (nirs4all.synthesis.fitter.SpectralProperties attribute) edge_noise_ratio (nirs4all.synthesis.fitter.EdgeArtifactInference attribute) EdgeArtifactInference (class in nirs4all.synthesis.fitter) EdgeArtifactsAugmenter (class in nirs4all.operators.augmentation.edge_artifacts) EdgeCurvatureAugmenter (class in nirs4all.operators.augmentation.edge_artifacts) effective_groups (nirs4all.controllers.splitters.split.ResolvedSplitGroups attribute) effective_resolution (nirs4all.synthesis.fitter.SpectralProperties attribute) effective_training_controls() (in module nirs4all.pipeline.dagml.training_controls) EMBEDDED (nirs4all.synthesis.instruments.InstrumentCategory attribute) emit() (nirs4all.core.logging.handlers.BufferedHandler method) (nirs4all.core.logging.handlers.NullHandler method) emit_late_partial_refit_origin() (in module nirs4all.pipeline.dagml.multimodal_contracts) emit_named_refit_origin() (in module nirs4all.pipeline.dagml.node_runner) emit_refit_attestation() (in module nirs4all.pipeline.dagml.torch_topology_replay) EMPTY_ASCII (nirs4all.core.logging.progress.ProgressBar attribute) EMPTY_UNICODE (nirs4all.core.logging.progress.ProgressBar attribute) EMSC (nirs4all.synthesis.scattering.ScatteringModel attribute) emsc_config (nirs4all.synthesis.fitter.FittedParameters attribute) EMSCBase (class in nirs4all.operators.models.sklearn.aom_fast) EMSCDistortionAugmenter (class in nirs4all.operators.augmentation.scattering) EMULSION (nirs4all.synthesis.prior.MatrixType attribute) enable_broadening (nirs4all.synthesis.environmental.TemperatureConfig attribute) enable_intensity (nirs4all.synthesis.environmental.TemperatureConfig attribute) enable_moisture (nirs4all.synthesis.environmental.EnvironmentalEffectsConfig attribute) enable_shift (nirs4all.synthesis.environmental.TemperatureConfig attribute) enable_temperature (nirs4all.synthesis.environmental.EnvironmentalEffectsConfig attribute) enabled (nirs4all.data.relations.RelationConfig attribute) encode_constructor_value() (in module nirs4all.pipeline.dagml.operator_parameters) encode_labels() (in module nirs4all.pipeline.dagml.methods_classification) encoding (nirs4all.data.detection.detector.DetectionResult attribute) engine (nirs4all.api.tuning.NativeTuning attribute) EnhancedZipLoader (class in nirs4all.data.loaders.archive_loader) entries (nirs4all.api.inspector_views.BiasVarianceResponse attribute) (nirs4all.api.inspector_views.FoldStabilityResponse attribute) (nirs4all.api.inspector_views.PreprocessingImpactResponse attribute) enumerate_combos() (nirs4all.data.relations.NormalizedObservationTable method) ENVIRONMENT (nirs4all.core.logging.events.EventType attribute) ENVIRONMENTAL (nirs4all.synthesis.benchmarks.BenchmarkDomain attribute) (nirs4all.synthesis.domains.DomainCategory attribute) environmental_config (nirs4all.synthesis.builder.BuilderState attribute) environmental_inference (nirs4all.synthesis.fitter.FittedParameters attribute) EnvironmentalEffectsConfig (class in nirs4all.synthesis.environmental) EnvironmentalInference (class in nirs4all.synthesis.fitter) EPO (class in nirs4all.operators.transforms.orthogonalization) epochs (nirs4all.pipeline.retrainer.RetrainConfig attribute) EQUAL_SAMPLE_INFLUENCE (nirs4all.data.fit_influence.FitInfluenceMode attribute) ERROR (nirs4all.core.logging.events.EventType attribute) (nirs4all.data.schema.validation.error_codes.ErrorSeverity attribute) (nirs4all.operators.data.merge.ShapeMismatchStrategy attribute) (nirs4all.operators.data.merge.SourceIncompatibleStrategy attribute) (nirs4all.operators.data.repetition.UnequelRepsStrategy attribute) (nirs4all.pipeline.config.generator.ValidationSeverity attribute) error_code (nirs4all.data.schema.validation.error_codes.DiagnosticMessage attribute) ErrorCategory (class in nirs4all.data.schema.validation.error_codes) ErrorCode (class in nirs4all.data.schema.validation.error_codes) ErrorRegistry (class in nirs4all.data.schema.validation.error_codes) errors (nirs4all.controllers.models.stacking.reconstructor.ValidationResult attribute) (nirs4all.data.parsers.base.ParserResult attribute) (nirs4all.data.predictions.MergeReport attribute) (nirs4all.data.schema.validation.error_codes.DiagnosticReport property) (nirs4all.data.schema.validation.validators.ValidationResult attribute) (nirs4all.pipeline.config.generator.ValidationResult attribute) ErrorSeverity (class in nirs4all.data.schema.validation.error_codes) estimate_bandwidth_broadening() (in module nirs4all.synthesis.wavenumber) estimate_cache_entry_bytes() (in module nirs4all.utils.memory) estimate_dataset_bytes() (in module nirs4all.utils.memory) estimate_train_size() (in module nirs4all.pipeline.analysis.model_diagnostics) estimated_moisture_variation (nirs4all.synthesis.fitter.EnvironmentalInference attribute) estimated_particle_size_um (nirs4all.synthesis.fitter.ScatteringInference attribute) estimated_resolution (nirs4all.synthesis.fitter.InstrumentInference attribute) estimated_temperature_variation (nirs4all.synthesis.fitter.EnvironmentalInference attribute) eval() (in module nirs4all.core.metrics) eval_list() (in module nirs4all.core.metrics) eval_multi() (in module nirs4all.core.metrics) eval_score() (nirs4all.data.predictions.PredictionResult method) evaluate() (nirs4all.pipeline.dagml.pipeline_objective.PipelineObjective method) (nirs4all.pipeline.dagml.pipeline_objective_compiler.CompiledPipelineObjective method) evaluate_conformal_prediction() (in module nirs4all.pipeline.dagml.conformal_contracts) evaluate_similarity() (nirs4all.synthesis.fitter.RealDataFitter method) evaluation_progress() (in module nirs4all.core.logging.progress) EvaluationProgress (class in nirs4all.core.logging.progress) EvaluationScope (class in nirs4all.data.reduction) event_type (nirs4all.core.logging.events.LogEvent attribute) EventType (class in nirs4all.core.logging.events) eviction_count (nirs4all.data.performance.cache.DataCache property) evidence (nirs4all.analysis.playground_dataset.PlaygroundDatasetSelection attribute) ExcelLoader (class in nirs4all.data.loaders.excel_loader) EXCHANGEABLE (nirs4all.data.relations.RepOrder attribute) exclude_outliers (nirs4all.data.reduction.ReductionPlan attribute) ExcludeController (class in nirs4all.controllers.data.exclude) excluded_indices (nirs4all.operators.filters.report.FilterResult attribute) exclusion_info (nirs4all.controllers.models.stacking.branch_validator.BranchInfo attribute) exclusion_rate (nirs4all.operators.filters.report.FilterResult attribute)

exclusion_reason (nirs4all.operators.filters.base.CompositeFilter property) (nirs4all.operators.filters.native.NativeRoleFilter property) (nirs4all.operators.filters.spectral_quality.SpectralQualityFilter property) (nirs4all.operators.filters.y_outlier.YOutlierFilter property) ExclusionChartController (class in nirs4all.controllers.charts.exclusion) executable (nirs4all.api.advanced_capabilities.AdvancedApiCapabilityDecision attribute) EXECUTABLE_REPRESENTATIONS (in module nirs4all.data.raw_multisource) execute() (in module nirs4all.pipeline.dagml.generated_hpo_worker) (in module nirs4all.pipeline.dagml.generated_worker) (in module nirs4all.pipeline.dagml.host_hpo_candidate_worker) (nirs4all.controllers.base.BaseController method) (nirs4all.controllers.charts.augmentation.AugmentationChartController method) (nirs4all.controllers.charts.exclusion.ExclusionChartController method) (nirs4all.controllers.charts.folds.FoldChartController method) (nirs4all.controllers.charts.spectra.SpectraChartController method) (nirs4all.controllers.charts.spectral_distribution.SpectralDistributionController method) (nirs4all.controllers.charts.targets.YChartController method) (nirs4all.controllers.data.auto_transfer_preproc.AutoTransferPreprocessingController method) (nirs4all.controllers.data.branch.BranchController method) (nirs4all.controllers.data.concat_transform.ConcatAugmentationController method) (nirs4all.controllers.data.exclude.ExcludeController method) (nirs4all.controllers.data.feature_augmentation.FeatureAugmentationController method) (nirs4all.controllers.data.feature_selection.FeatureSelectionController method) (nirs4all.controllers.data.merge.MergeController method) (nirs4all.controllers.data.rep_fusion.RepFusionController method) (nirs4all.controllers.data.repetition.RepToPPController method) (nirs4all.controllers.data.repetition.RepToSourcesController method) (nirs4all.controllers.data.resampler.ResamplerController method) (nirs4all.controllers.data.sample_augmentation.SampleAugmentationController method) (nirs4all.controllers.data.tag.TagController method) (nirs4all.controllers.flow.dummy.DummyController method) (nirs4all.controllers.models.autogluon_model.AutoGluonModelController method) (nirs4all.controllers.models.jax_model.JaxModelController method) (nirs4all.controllers.models.meta_model.MetaModelController method) (nirs4all.controllers.models.residual_model.ResidualModelController method) (nirs4all.controllers.models.tensorflow_model.TensorFlowModelController method) (nirs4all.controllers.models.torch_model.PyTorchModelController method) (nirs4all.controllers.splitters.fold_file_loader.FoldFileLoaderController method) (nirs4all.controllers.splitters.split.CrossValidatorController method) (nirs4all.controllers.transforms.y_transformer.YTransformerMixinController method) (nirs4all.pipeline.execution.orchestrator.PipelineOrchestrator method) execute_attested_by_source_cv() (in module nirs4all.pipeline.dagml.attested_by_source) execute_compiled_replay() (nirs4all.pipeline.dagml.estimator.DagMLPipelineEstimator method) execute_methods_cv_refit_terminal_predict() (nirs4all.pipeline.dagml.native_client.DagMLNativeClient method) execute_methods_portable_full_refit() (nirs4all.pipeline.dagml.native_client.DagMLNativeClient method) execute_methods_training() (in module nirs4all.pipeline.dagml.methods_multimodal) (nirs4all.pipeline.dagml.native_client.DagMLNativeClient method) execute_preview() (in module nirs4all.analysis.playground_execution) execute_training() (in module nirs4all.api.dagml_training) (nirs4all.pipeline.dagml.native_client.DagMLNativeClient method) execution (nirs4all.pipeline.dagml.native_conformal_calibration.NativeConformalCalibrationReplay attribute) execution_backend (nirs4all.pipeline.dagml.rt.RtRunRequest attribute) execution_entrypoint (nirs4all.api.native_witness.NativeMethodsExecutionClaim attribute) (nirs4all.api.native_witness.NativeMethodsTerminalExecutionClaim attribute) execution_mode (nirs4all.api.native_witness.NativeMethodsExecutionClaim attribute) (nirs4all.api.native_witness.NativeMethodsTerminalExecutionClaim attribute) ExecutionPath (class in nirs4all.pipeline.storage.artifacts.utils) ExecutionProfileError ExecutorBuilder (class in nirs4all.pipeline.execution.builder) exp (nirs4all.synthesis.accelerated.AcceleratedArrays attribute) EXPAND (nirs4all.core.logging.events.EventType attribute) expand() (nirs4all.pipeline.config.generator.CartesianStrategy method) (nirs4all.pipeline.config.generator.ChainStrategy method) (nirs4all.pipeline.config.generator.ExpansionStrategy method) (nirs4all.pipeline.config.generator.GridStrategy method) (nirs4all.pipeline.config.generator.LogRangeStrategy method) (nirs4all.pipeline.config.generator.OrStrategy method) (nirs4all.pipeline.config.generator.RangeStrategy method) (nirs4all.pipeline.config.generator.SampleStrategy method) (nirs4all.pipeline.config.generator.ZipStrategy method) expand_full_train_variants() (in module nirs4all.pipeline.dagml.full_train_variants) expand_spec_iter() (in module nirs4all.pipeline.config.generator) expand_spec_with_choices() (in module nirs4all.pipeline.config.generator) expanded_steps (nirs4all.pipeline.execution.refit.model_selector.PerModelSelection attribute) expansion_count (nirs4all.pipeline.run.TemplateInfo attribute) ExpansionStrategy (class in nirs4all.pipeline.config.generator) ExpansionTreeNode (class in nirs4all.pipeline.config.generator) expected (nirs4all.data.relations.SourceRepetitionSpec attribute) expected_reps (nirs4all.operators.data.repetition.RepetitionConfig attribute) experimental_unit_contract() (in module nirs4all.pipeline.dagml.experimental_units) experimental_unit_metadata() (in module nirs4all.pipeline.dagml.experimental_units) explain() (in module nirs4all.api.explain) (nirs4all.pipeline.explainer.Explainer method) explain_general() (in module nirs4all.api.general_explain) explain_model() (nirs4all.visualization.analysis.shap.ShapAnalyzer method) explain_preflight() (in module nirs4all.api.explain) explained_variance_ratio (nirs4all.synthesis.fitter.PCAVarianceParams attribute) Explainer (class in nirs4all.pipeline.explainer) explanation_level (nirs4all.pipeline.explain_lineage.RelationExplainLineage attribute) explicit_sample_ids (nirs4all.pipeline.dagml.estimator.DagMLFitIdentityFrame attribute) (nirs4all.pipeline.dagml.estimator.DagMLPredictIdentityFrame attribute) (nirs4all.pipeline.dagml.fit_identity.DagMLCalibrationIdentityFrame attribute) ExplicitMatrixOperator (class in nirs4all.operators.models.sklearn.aom_pls) export() (nirs4all.api.native_archive_training.NativeMethodsArchiveRunResult method) (nirs4all.api.native_refit_result.NativeMethodsRefitResult method) (nirs4all.api.native_result.NativeMethodsRunResult method) (nirs4all.pipeline.bundle.generator.BundleGenerator method) (nirs4all.pipeline.dagml.methods_multimodal.MethodsMultimodalRunResult method) (nirs4all.pipeline.dagml.named_stacking.NamedStackingResult method) export_calibrated_result() (in module nirs4all.api.calibrate) export_chain() (nirs4all.pipeline.storage.store_protocol.WorkspaceStoreProtocol method) export_conformal_result_bundle() (in module nirs4all.pipeline.dagml.conformal_store) export_from_chain() (nirs4all.pipeline.bundle.generator.BundleGenerator method) export_model() (nirs4all.api.native_result.NativeMethodsRunResult method) (nirs4all.pipeline.dagml.named_stacking.NamedStackingResult method) export_native_archive() (nirs4all.pipeline.dagml.estimator.DagMLPipelineEstimator method) export_prediction_arrays() (in module nirs4all.pipeline.storage.prediction_export) export_presets() (in module nirs4all.pipeline.config.generator) export_template() (nirs4all.pipeline.storage.library.PipelineLibrary method) export_to_csv() (in module nirs4all.synthesis.exporter) export_to_folder() (in module nirs4all.synthesis.exporter) ExportConfig (class in nirs4all.synthesis.exporter) extended_bank() (in module nirs4all.operators.models.sklearn.aom_pls) extra (nirs4all.api.robustness.RobustnessScenarioSpec attribute) (nirs4all.api.tuning.TuningCalibration attribute) (nirs4all.core.logging.context.RunState attribute) (nirs4all.core.logging.events.LogEvent attribute) extra_fingerprints (nirs4all.data.relation_replay_manifest.RelationReplayManifest attribute) extract() (nirs4all.pipeline.retrainer.Retrainer method) extract_base_node() (in module nirs4all.pipeline.config.generator) extract_constraints() (in module nirs4all.pipeline.config.generator) extract_features() (nirs4all.controllers.models.stacking.classification.ClassificationFeatureExtractor method) extract_fold_id_from_artifact_id() (in module nirs4all.pipeline.storage.artifacts.utils) extract_metadata() (in module nirs4all.pipeline.config.generator) extract_metric_values() (nirs4all.visualization.chart_utils.predictions_adapter.PredictionsAdapter method) extract_modifiers() (in module nirs4all.pipeline.config.generator) extract_or_choices() (in module nirs4all.pipeline.config.generator) extract_pipeline_id_from_artifact_id() (in module nirs4all.pipeline.storage.artifacts.utils) extract_playground_dataset() (in module nirs4all.analysis.playground_dataset) extract_range_spec() (in module nirs4all.pipeline.config.generator) extract_splitter_config() (in module nirs4all.pipeline.analysis.splitter_config) extract_tags() (in module nirs4all.pipeline.config.generator) ExtractedPipeline (class in nirs4all.pipeline.retrainer)

F

F() (nirs4all.operators.models.sklearn.aom_fast.LowRankBase method) FABRY_PEROT (nirs4all.synthesis.instruments.MonochromatorType attribute) factory (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingContractFactoryCompiler attribute) fail_pipeline() (nirs4all.pipeline.storage.store_protocol.WorkspaceStoreProtocol method) fail_run() (nirs4all.pipeline.storage.store_protocol.WorkspaceStoreProtocol method) FAILED (nirs4all.pipeline.run.RunStatus attribute) failed_results (nirs4all.pipeline.run.RunSummary attribute) families() (nirs4all.operators.models.sklearn.aom_fast.OperatorChain method) family_tag (nirs4all.operators.models.sklearn.aom_fast.ScreeningCandidate attribute) fast_covariance_screen() (in module nirs4all.operators.models.sklearn.aom_fast) FastAOMConfig (class in nirs4all.operators.models.sklearn.aom_fast) FastAOMPLSRidge (class in nirs4all.operators.models.sklearn.aom_fast) fat_set() (in module nirs4all.operators.transforms.presets) FCKPLS (class in nirs4all.operators.models.sklearn.fckpls) FCKStaticTransformer (class in nirs4all.operators.transforms.fck_static) feature_blocks() (nirs4all.pipeline.dagml.fixed_cohort_views.FixedCohortTaskViews method) feature_branches (nirs4all.operators.data.merge.MergeConfig attribute) feature_content_fingerprint() (in module nirs4all.pipeline.dagml.fit_identity) feature_dim (nirs4all.controllers.data.merge.BranchAnalysisResult attribute) (nirs4all.controllers.data.merge.DisjointMergeMetadata attribute) feature_dims (nirs4all.controllers.data.merge.AsymmetryReport attribute) feature_dims() (nirs4all.data.raw_multisource.RawMultiSourceDataset method) feature_lineage (nirs4all.pipeline.explain_lineage.RelationExplainLineage attribute) feature_mask (nirs4all.data.raw_multisource.AlignedMaterialization attribute) feature_names (nirs4all.controllers.models.stacking.classification.MetaFeatureInfo attribute) (nirs4all.data.meta_features.AlignedMetaFeatures attribute) (nirs4all.pipeline.dagml.cv_weight_transfer.TransferInputContract attribute) (nirs4all.pipeline.explain_lineage.RelationExplainLineage attribute) feature_names_in_ (nirs4all.operators.transforms.sequence.SequenceSummary attribute) feature_step() (in module nirs4all.pipeline.execution.preprocessing) feature_to_model (nirs4all.controllers.models.stacking.classification.MetaFeatureInfo attribute) FeatureAugmentationController (class in nirs4all.controllers.data.feature_augmentation) FeatureConcat (class in nirs4all.operators.transforms.concat) FeatureNameGenerator (class in nirs4all.controllers.models.stacking.classification) features (nirs4all.api.tuning.TuningConformalScoreCalibration attribute) FEATURES (nirs4all.operators.data.merge.MergeMode attribute) features (nirs4all.operators.models.jax.generic.JaxMLPClassifier attribute) (nirs4all.operators.models.jax.generic.JaxMLPRegressor attribute) (nirs4all.operators.models.jax.nicon.SeparableConv1D attribute) features_shape (nirs4all.visualization.pipeline_diagram.PipelineNode attribute) features_sources() (nirs4all.data.multimodal.MultimodalSpectroDataset method) (nirs4all.data.raw_multisource.RawMultiSourceDataset method) FeatureSelectionController (class in nirs4all.controllers.data.feature_selection) ff_dim (nirs4all.operators.models.jax.nicon.TransformerBlock attribute) FFT_Conv() (in module nirs4all.operators.models.tensorflow.generic) field (nirs4all.data.schema.validation.validators.ValidationError attribute) (nirs4all.data.schema.validation.validators.ValidationWarning attribute) file (nirs4all.data.schema.config.FoldConfig attribute) FILE (nirs4all.data.schema.validation.error_codes.ErrorCategory attribute) file_extension (nirs4all.synthesis.exporter.ExportConfig attribute) file_fingerprint() (in module nirs4all.pipeline.dagml.host_artifacts) file_not_found() (nirs4all.data.schema.validation.error_codes.DiagnosticBuilder method) file_path (nirs4all.pipeline.run.TemplateInfo attribute) file_size (nirs4all.pipeline.run.DatasetInfo attribute) files (nirs4all.pipeline.dagml.conformal_store.ConformalStoreManifest attribute) FilesParser (class in nirs4all.data.parsers.files_parser) FILLED_ASCII (nirs4all.core.logging.progress.ProgressBar attribute) FILLED_UNICODE (nirs4all.core.logging.progress.ProgressBar attribute) FILM (nirs4all.synthesis.prior.MatrixType attribute) FILTER (nirs4all.synthesis.instruments.InstrumentCategory attribute) filter_name (nirs4all.operators.filters.report.FilterResult attribute) filter_params() (nirs4all.controllers.models.factory.ModelFactory static method) filter_results (nirs4all.operators.filters.report.FilteringReport attribute) FILTER_WHEEL (nirs4all.synthesis.instruments.MonochromatorType attribute) FilteringReport (class in nirs4all.operators.filters.report) FilteringReportGenerator (class in nirs4all.operators.filters.report) FilterResult (class in nirs4all.operators.filters.report) final_entry (nirs4all.api.result.LazyModelRefitResult property) (nirs4all.api.result.ModelRefitResult attribute) final_exclusion_rate (nirs4all.operators.filters.report.FilteringReport property) FINAL_OUTPUT (nirs4all.data.reduction.ReductionRole attribute) final_score (nirs4all.api.result.LazyModelRefitResult property) (nirs4all.api.result.ModelRefitResult attribute) final_validation_profile (nirs4all.operators.data.merge.StackingFitContract attribute) finalize_figures() (in module nirs4all.visualization.display) FINETUNE (nirs4all.pipeline.retrainer.RetrainMode attribute) finetune() (nirs4all.optimization.n4m_engine.N4MFinetuneManager method) fingerprint (nirs4all.api.robustness.RobustnessMetricSet property) (nirs4all.api.robustness.RobustnessReport property) (nirs4all.api.robustness.RobustnessScenarioResult property) (nirs4all.api.robustness.RobustnessSliceResult property) (nirs4all.api.tuning.OrderedSearchSpaceSpec property) (nirs4all.data.raw_multisource.AlignedMaterialization property) (nirs4all.pipeline.dagml.conformal_contracts.CalibratedRunResult property) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationArtifact property) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationCohortManifest property) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationSpec property) (nirs4all.pipeline.dagml.conformal_contracts.ConformalMetricSet property) (nirs4all.pipeline.dagml.conformal_store.ConformalStoreManifest property) (nirs4all.pipeline.dagml.estimator.DagMLFitIdentityFrame attribute) (nirs4all.pipeline.dagml.estimator.DagMLPredictIdentityFrame attribute) (nirs4all.pipeline.dagml.fit_identity.DagMLCalibrationIdentityFrame attribute) fingerprint() (nirs4all.data.raw_multisource.CombinationPlan method) (nirs4all.data.raw_multisource.RawMultiSourceDataset method) (nirs4all.data.raw_multisource.RepresentationPlan method) (nirs4all.data.reduction.ReducerState method) (nirs4all.data.reduction.ReductionPlan method) (nirs4all.data.relation_replay_manifest.RelationReplayManifest method) (nirs4all.data.relations.NormalizedObservationTable method) (nirs4all.data.relations.SampleRelationPlan method) FiniteDifferenceOperator (class in nirs4all.operators.models.sklearn.aom_pls) FIRST_DERIVATIVE (nirs4all.synthesis.fitter.PreprocessingType attribute) first_derivative() (in module nirs4all.operators.transforms.nirs) fit() (nirs4all.analysis.selector.TransferPreprocessingSelector method) (nirs4all.api.general_transfer.FrozenTransferTransform method) (nirs4all.operators.augmentation.random.Random_X_Operation method) (nirs4all.operators.augmentation.random.Rotate_Translate method) (nirs4all.operators.augmentation.spectral.BandMasking method) (nirs4all.operators.augmentation.spectral.BandPerturbation method) (nirs4all.operators.augmentation.spectral.ChannelDropout method) (nirs4all.operators.augmentation.spectral.GaussianAdditiveNoise method) (nirs4all.operators.augmentation.spectral.GaussianSmoothingJitter method) (nirs4all.operators.augmentation.spectral.LinearBaselineDrift method) (nirs4all.operators.augmentation.spectral.LocalClipping method) (nirs4all.operators.augmentation.spectral.LocalMixupAugmenter method) (nirs4all.operators.augmentation.spectral.LocalWavelengthWarp method) (nirs4all.operators.augmentation.spectral.MixupAugmenter method) (nirs4all.operators.augmentation.spectral.MultiplicativeNoise method) (nirs4all.operators.augmentation.spectral.PolynomialBaselineDrift method) (nirs4all.operators.augmentation.spectral.ScatterSimulationMSC method) (nirs4all.operators.augmentation.spectral.SmoothMagnitudeWarp method) (nirs4all.operators.augmentation.spectral.SpikeNoise method) (nirs4all.operators.augmentation.spectral.UnsharpSpectralMask method) (nirs4all.operators.augmentation.spectral.WavelengthShift method) (nirs4all.operators.augmentation.spectral.WavelengthStretch method) (nirs4all.operators.augmentation.splines.Spline_Curve_Simplification method) (nirs4all.operators.augmentation.splines.Spline_Smoothing method) (nirs4all.operators.augmentation.splines.Spline_X_Perturbations method) (nirs4all.operators.augmentation.splines.Spline_X_Simplification method) (nirs4all.operators.augmentation.splines.Spline_Y_Perturbations method) (nirs4all.operators.augmentation.synthesis.BatchEffectAugmenter method) (nirs4all.operators.augmentation.synthesis.DeadBandAugmenter method) (nirs4all.operators.augmentation.synthesis.HeteroscedasticNoiseAugmenter method) (nirs4all.operators.augmentation.synthesis.InstrumentalBroadeningAugmenter method) (nirs4all.operators.augmentation.synthesis.PathLengthAugmenter method) (nirs4all.operators.filters.base.CompositeFilter method) (nirs4all.operators.filters.native.NativeRoleFilter method) (nirs4all.operators.filters.spectral_quality.SpectralQualityFilter method) (nirs4all.operators.filters.y_outlier.YOutlierFilter method) (nirs4all.operators.methods.n4m_ops.MethodsPLS method) (nirs4all.operators.methods.n4m_ops.MethodsSNV method) (nirs4all.operators.models.multimodal.MultimodalClassifier method) (nirs4all.operators.models.multimodal.MultimodalRegressor method) (nirs4all.operators.models.multimodal.TensorPCA method) (nirs4all.operators.models.sklearn.aom_fast.AbsorbanceBase method) (nirs4all.operators.models.sklearn.aom_fast.ASLSBase method) (nirs4all.operators.models.sklearn.aom_fast.BaseTransform method) (nirs4all.operators.models.sklearn.aom_fast.EMSCBase method) (nirs4all.operators.models.sklearn.aom_fast.FastAOMPLSRidge method) (nirs4all.operators.models.sklearn.aom_fast.HardAOMChainPLSRidge method) (nirs4all.operators.models.sklearn.aom_fast.MSCBase method) (nirs4all.operators.models.sklearn.aom_fast.OperatorChain method) (nirs4all.operators.models.sklearn.aom_fast.OSCBase method) (nirs4all.operators.models.sklearn.aom_fast.RawBase method) (nirs4all.operators.models.sklearn.aom_fast.SingleChainPLSRidge method) (nirs4all.operators.models.sklearn.aom_fast.SNVBase method) (nirs4all.operators.models.sklearn.aom_fast.SNVOSCBase method) (nirs4all.operators.models.sklearn.aom_fast.SoftAOMChainPLSRidge method) (nirs4all.operators.models.sklearn.aom_fast.SparseMultiKernelRidge method) (nirs4all.operators.models.sklearn.aom_fast.WhittakerBaseLine method) (nirs4all.operators.models.sklearn.aom_pls.ComposedOperator method) (nirs4all.operators.models.sklearn.aom_pls.LinearSpectralOperator method) (nirs4all.operators.models.sklearn.aom_pls_aomlib.AOMPLSAomlibRegressor method) (nirs4all.operators.models.sklearn.aom_ridge.AOMKernelizer method) (nirs4all.operators.models.sklearn.aom_ridge.AOMLocalRidge method) (nirs4all.operators.models.sklearn.aom_ridge.AOMMultiBranchMKL method) (nirs4all.operators.models.sklearn.aom_ridge.AOMMultiKernelRidge method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeAutoSelector method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeBlender method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeClassifier method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgePLS method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgePLSCV method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeRegressor method) (nirs4all.operators.models.sklearn.dipls.DiPLS method) (nirs4all.operators.models.sklearn.fckpls.FCKPLS method) (nirs4all.operators.models.sklearn.fckpls.FractionalConvFeaturizer method) (nirs4all.operators.models.sklearn.ikpls.IKPLS method) (nirs4all.operators.models.sklearn.ipls.IntervalPLS method) (nirs4all.operators.models.sklearn.kopls.KOPLS method) (nirs4all.operators.models.sklearn.lwpls.LWPLS method) (nirs4all.operators.models.sklearn.mbpls.MBPLS method) (nirs4all.operators.models.sklearn.oklmpls.IdentityFeaturizer method) (nirs4all.operators.models.sklearn.oklmpls.OKLMPLS method) (nirs4all.operators.models.sklearn.oklmpls.PolynomialFeaturizer method) (nirs4all.operators.models.sklearn.oklmpls.RBFFeaturizer method) (nirs4all.operators.models.sklearn.opls.OPLS method) (nirs4all.operators.models.sklearn.oplsda.OPLSDA method) (nirs4all.operators.models.sklearn.pcr.PCR method) (nirs4all.operators.models.sklearn.recursive_pls.RecursivePLS method) (nirs4all.operators.models.sklearn.robust_pls.RobustPLS method) (nirs4all.operators.models.sklearn.simpls.SIMPLS method) (nirs4all.operators.models.sklearn.sparsepls.SparsePLS method) (nirs4all.operators.models.sklearn.tabpfn_nirs.TabPFNNIRSRegressor method) (nirs4all.operators.transforms.concat.FeatureConcat method) (nirs4all.operators.transforms.fck_static.FCKStaticTransformer method) (nirs4all.operators.transforms.feature_selection.FlexiblePCA method) (nirs4all.operators.transforms.feature_selection.FlexibleSVD method) (nirs4all.operators.transforms.features.CropTransformer method) (nirs4all.operators.transforms.features.FlattenPreprocessing method) (nirs4all.operators.transforms.features.ResampleTransformer method) (nirs4all.operators.transforms.nirs.LogTransform method) (nirs4all.operators.transforms.nirs.PyBaselineCorrection method) (nirs4all.operators.transforms.nirs.ReflectanceToAbsorbance method) (nirs4all.operators.transforms.nirs.WaveletFeatures method) (nirs4all.operators.transforms.nirs.WaveletPCA method) (nirs4all.operators.transforms.nirs.WaveletSVD method) (nirs4all.operators.transforms.norris_williams.NorrisWilliams method) (nirs4all.operators.transforms.orthogonalization.EPO method) (nirs4all.operators.transforms.orthogonalization.OSC method) (nirs4all.operators.transforms.scalers.Derivate method) (nirs4all.operators.transforms.scalers.LocalStandardNormalVariate method) (nirs4all.operators.transforms.scalers.Normalize method) (nirs4all.operators.transforms.scalers.SimpleScale method) (nirs4all.operators.transforms.sequence.SequenceSummary method) (nirs4all.operators.transforms.signal.Baseline method) (nirs4all.operators.transforms.signal_conversion.FractionToPercent method) (nirs4all.operators.transforms.signal_conversion.FromAbsorbance method) (nirs4all.operators.transforms.signal_conversion.KubelkaMunk method) (nirs4all.operators.transforms.signal_conversion.PercentToFraction method) (nirs4all.operators.transforms.signal_conversion.SignalTypeConverter method) (nirs4all.operators.transforms.signal_conversion.ToAbsorbance method) (nirs4all.operators.transforms.targets.IntegerKBinsDiscretizer method) (nirs4all.operators.transforms.targets.RangeDiscretizer method) (nirs4all.operators.transforms.wavelet_denoise.WaveletDenoise method) (nirs4all.pipeline.dagml.auto_transfer.DagMLAutoTransferPreprocessor method) (nirs4all.pipeline.dagml.autogluon_estimator.DagMLAutoGluonEstimator method) (nirs4all.pipeline.dagml.estimator.DagMLPipelineEstimator method) (nirs4all.pipeline.dagml.framework_estimator.DagMLFrameworkEstimator method) (nirs4all.pipeline.dagml.na_policy.ReplaceMissingValues method) (nirs4all.pipeline.dagml.run_paths.DuplicationBranchMergeTransformer method) (nirs4all.pipeline.dagml.target_capture.CapturedTargetTransform method) (nirs4all.synthesis.fitter.ComponentFitter method) (nirs4all.synthesis.fitter.DerivativeAwareForwardModelFitter method) (nirs4all.synthesis.fitter.ForwardModelFitter method) (nirs4all.synthesis.fitter.OptimizedComponentFitter method) (nirs4all.synthesis.fitter.RealBandFitter method) (nirs4all.synthesis.fitter.RealDataFitter method) (nirs4all.synthesis.fitter.VarianceFitter method) (nirs4all.visualization.analysis.transfer.PreprocPCAEvaluator method)

fit_batch() (nirs4all.synthesis.fitter.ComponentFitter method) fit_components() (in module nirs4all.synthesis.fitter) fit_components_optimized() (in module nirs4all.synthesis.fitter) fit_conformal_calibration_artifact() (in module nirs4all.pipeline.dagml.conformal_contracts) fit_declared_methods_classifier() (in module nirs4all.pipeline.dagml.methods_classification) fit_declared_methods_model() (in module nirs4all.pipeline.dagml.methods_multimodal) fit_from_configs() (nirs4all.analysis.selector.TransferPreprocessingSelector method) fit_from_path() (nirs4all.synthesis.fitter.RealDataFitter method) fit_identity_frame (nirs4all.pipeline.dagml.terminal_predict_lowerer.StrictMethodsTerminalPredictionExecution attribute) fit_influence_policy (nirs4all.data.relation_replay_manifest.RelationReplayManifest attribute) (nirs4all.operators.data.merge.MetaFeaturePlan attribute) fit_lowrank_bases() (in module nirs4all.operators.models.sklearn.aom_fast) fit_native_pipeline() (in module nirs4all.api.native_training) fit_partition (nirs4all.data.reduction.ReducerState attribute) (nirs4all.data.reduction.ReductionPlan attribute) fit_real_bands() (in module nirs4all.synthesis.fitter) fit_recipe() (nirs4all.pipeline.portable_n4m_trained.PortableN4MTrainedPipeline class method) fit_scope (nirs4all.data.reduction.ReducerState attribute) (nirs4all.data.reduction.ReductionPlan attribute) fit_selected() (nirs4all.pipeline.dagml.auto_transfer.DagMLAutoTransferPreprocessor method) fit_split_absolute_residual_calibrator() (in module nirs4all.pipeline.dagml.conformal_contracts) fit_to_real_data() (in module nirs4all.synthesis.fitter) fit_transform() (nirs4all.operators.models.sklearn.aom_fast.BaseTransform method) (nirs4all.operators.models.sklearn.aom_ridge.AOMKernelizer method) (nirs4all.operators.transforms.orthogonalization.EPO method) (nirs4all.operators.transforms.orthogonalization.OSC method) (nirs4all.operators.transforms.scalers.LocalStandardNormalVariate method) (nirs4all.pipeline.dagml.run_paths.DuplicationBranchMergeTransformer method) (nirs4all.pipeline.dagml.target_capture.CapturedTargetTransform method) fit_variance() (in module nirs4all.synthesis.fitter) fit_with_views() (nirs4all.pipeline.dagml.auto_transfer.DagMLAutoTransferPreprocessor method) FitInfluenceError FitInfluenceMode (class in nirs4all.data.fit_influence) FitScope (class in nirs4all.data.reduction) fitted_parameters() (nirs4all.operators.models.sklearn.aom_pls.LinearSpectralOperator method) fitted_params (nirs4all.synthesis.fitter.RealDataFitter attribute) fitted_spectrum (nirs4all.synthesis.fitter.ComponentFitResult attribute) (nirs4all.synthesis.fitter.OptimizedFitResult attribute) (nirs4all.synthesis.fitter.RealBandFitResult attribute) FittedParameters (class in nirs4all.synthesis.fitter) FIXED (nirs4all.synthesis.products.VariationType attribute) FixedCohortTaskViews (class in nirs4all.pipeline.dagml.fixed_cohort_views) FixedCohortViewStore (class in nirs4all.pipeline.dagml.fixed_cohort_views) Flatten (class in nirs4all.operators.models.jax.nicon) FLATTEN (nirs4all.operators.data.merge.SourceIncompatibleStrategy attribute) FlattenPreprocessing (class in nirs4all.operators.transforms.features) FlexiblePCA (class in nirs4all.operators.transforms.feature_selection) FlexibleSVD (class in nirs4all.operators.transforms.feature_selection) flicker_corner_freq (nirs4all.synthesis.detectors.NoiseModelConfig attribute) flicker_noise_enabled (nirs4all.synthesis.detectors.NoiseModelConfig attribute) float_precision (nirs4all.synthesis.exporter.ExportConfig attribute) flush_to() (nirs4all.core.logging.handlers.BufferedHandler method) fn (nirs4all.operators.models.jax.nicon.Activation attribute) FOLD (nirs4all.data.reduction.ReductionAxis attribute) (nirs4all.data.schema.validation.error_codes.ErrorCategory attribute) FOLD_ENSEMBLE (nirs4all.data.reduction.ReductionRole attribute) fold_id (nirs4all.api.inspector_views.FoldScoreEntry attribute) (nirs4all.api.inspector_views.ScatterPoint attribute) (nirs4all.data.predictions.PredictionResult property) (nirs4all.data.reduction.ReducerState attribute) (nirs4all.data.reduction.ReductionPlan attribute) (nirs4all.pipeline.config.context.DataSelector attribute) (nirs4all.pipeline.dagml.cv_weight_transfer.WarmStartRequest attribute) (nirs4all.pipeline.storage.artifacts.utils.ExecutionPath attribute) fold_ids (nirs4all.api.inspector_views.FoldStabilityResponse attribute) (nirs4all.controllers.models.pipeline_cv.PrecomputedFoldSplitter property) fold_idx (nirs4all.controllers.models.components.identifier_generator.ModelIdentifiers attribute) fold_index (nirs4all.api.inspector_views.FoldScoreEntry attribute) fold_level() (nirs4all.core.logging.progress.MultiLevelProgress method) fold_strategy (nirs4all.pipeline.bundle.loader.BundleMetadata attribute) FOLD_TRAIN (nirs4all.data.reduction.FitScope attribute) FoldAlignmentValidator (class in nirs4all.controllers.models.stacking.reconstructor) FoldChartController (class in nirs4all.controllers.charts.folds) FoldConfig (class in nirs4all.data.schema.config) FoldDefinition (class in nirs4all.data.schema.config) FOLDER (nirs4all.pipeline.resolver.SourceType attribute) folder_to_name() (in module nirs4all.data.config_parser) FolderParser (class in nirs4all.data.parsers.folder_parser) FoldFileLoaderController (class in nirs4all.controllers.splitters.fold_file_loader) FoldFileParser (class in nirs4all.controllers.splitters.fold_file_loader) FoldLocalExclusion (class in nirs4all.pipeline.dagml.exclude) FoldLocalFolds (class in nirs4all.pipeline.dagml.folds) FoldPreprocessedModel (class in nirs4all.pipeline.execution.preprocessing) FoldPreprocessing (class in nirs4all.pipeline.execution.preprocessing) folds (nirs4all.controllers.models.pipeline_cv.PrecomputedFoldSplitter attribute) (nirs4all.data.schema.config.FoldConfig attribute) FoldScoreEntry (class in nirs4all.api.inspector_views) FoldStabilityRequest (class in nirs4all.api.inspector_views) FoldStabilityResponse (class in nirs4all.api.inspector_views) FoldStrategy (class in nirs4all.pipeline.resolver) FOOD (nirs4all.synthesis.benchmarks.BenchmarkDomain attribute) (nirs4all.synthesis.domains.DomainCategory attribute) for_training_subset() (nirs4all.controllers.models.pipeline_cv.PrecomputedFoldSplitter method) forbidden_role_sequences (nirs4all.operators.models.sklearn.aom_fast.ChainGrammar attribute) force_params (nirs4all.api.tuning.NativeTuning attribute) format (nirs4all.data.schema.config.FoldConfig attribute) (nirs4all.pipeline.execution.result.ArtifactMeta attribute) (nirs4all.synthesis.exporter.ExportConfig attribute) (nirs4all.workspace.compat.WorkspaceFormatInfo attribute) format_bytes() (in module nirs4all.utils.memory) format_config_table() (in module nirs4all.pipeline.config.generator) format_errors() (nirs4all.controllers.models.stacking.reconstructor.ValidationResult method) format_number() (in module nirs4all.core.logging.formatters) format_operator_with_params() (in module nirs4all.utils.operator_formatting) format_table() (in module nirs4all.core.logging.formatters) format_version (nirs4all.pipeline.execution.result.ArtifactMeta attribute) format_warnings() (nirs4all.controllers.models.stacking.reconstructor.ValidationResult method) FormatNotSupportedError formula (nirs4all.synthesis.components.SpectralComponent attribute) forward() (nirs4all.operators.models.pytorch.nicon.DepthwiseConv1D method) (nirs4all.operators.models.pytorch.nicon.GlobalAveragePooling1D method) (nirs4all.operators.models.pytorch.nicon.LayerNorm1D method) (nirs4all.operators.models.pytorch.nicon.SeparableConv1D method) (nirs4all.operators.models.pytorch.nicon.SpatialDropout1D method) (nirs4all.operators.models.pytorch.spectral_transformer.SpectralTransformer method) ForwardModelFitter (class in nirs4all.synthesis.fitter) fractional_kernel_1d() (in module nirs4all.operators.models.sklearn.fckpls) fractional_kernel_grrunwald_letnikov() (in module nirs4all.operators.models.sklearn.fckpls) FractionalConvFeaturizer (class in nirs4all.operators.models.sklearn.fckpls) FractionToPercent (class in nirs4all.operators.transforms.signal_conversion) FRAMES_ASCII (nirs4all.core.logging.progress.SpinnerProgress attribute) FRAMES_UNICODE (nirs4all.core.logging.progress.SpinnerProgress attribute) framework_model_params() (in module nirs4all.pipeline.dagml.framework_estimator) free_water_fraction (nirs4all.synthesis.environmental.MoistureConfig attribute) FREE_WATER_PEAK_1ST (nirs4all.operators.augmentation.environmental.MoistureAugmenter attribute) FREE_WATER_PEAK_COMB (nirs4all.operators.augmentation.environmental.MoistureAugmenter attribute) freeze_layers (nirs4all.pipeline.retrainer.RetrainConfig attribute) fresh_training_estimator() (in module nirs4all.api.general_transfer) from_artifact_id_v3() (nirs4all.pipeline.storage.artifacts.utils.ExecutionPath class method) from_bundle() (nirs4all.sklearn.classifier.NIRSPipelineClassifier class method) from_by_repetition() (nirs4all.data.reduction.ReductionPlan class method) from_config() (nirs4all.data.relations.RepetitionSpec class method) from_dict() (nirs4all.api.robustness.RobustnessMetricSet class method) (nirs4all.api.robustness.RobustnessReport class method) (nirs4all.api.robustness.RobustnessScenarioResult class method) (nirs4all.api.robustness.RobustnessSliceResult class method) (nirs4all.controllers.data.merge.DisjointMergeMetadata class method) (nirs4all.controllers.data.merge.SourceMergeConfig class method) (nirs4all.data.raw_multisource.CombinationPlan class method) (nirs4all.data.raw_multisource.RepresentationPlan class method) (nirs4all.data.reduction.ReducerState class method) (nirs4all.data.reduction.ReductionPlan class method) (nirs4all.data.relation_replay_manifest.RelationReplayManifest class method) (nirs4all.operators.data.merge.MergeConfig class method) (nirs4all.operators.data.merge.MetaFeaturePlan class method) (nirs4all.operators.data.merge.SourceBranchConfig class method) (nirs4all.operators.data.merge.StackingFitContract class method) (nirs4all.operators.data.repetition.RepetitionConfig class method) (nirs4all.pipeline.bundle.loader.BundleMetadata class method) (nirs4all.pipeline.dagml.conformal_contracts.CalibratedRunResult class method) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationArtifact class method) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationCohortManifest class method) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationCohortRow class method) (nirs4all.pipeline.dagml.conformal_store.ConformalStoreManifest class method) (nirs4all.pipeline.run.Run class method) (nirs4all.synthesis.fitter.FittedParameters class method) (nirs4all.synthesis.sources.SourceConfig class method) from_estimator() (nirs4all.api.native_result.NativeMethodsRunResult class method) from_folds() (nirs4all.controllers.models.pipeline_cv.PrecomputedFoldSplitter class method) from_frame() (nirs4all.data.relations.SourceObservations class method) from_json() (nirs4all.api.robustness.RobustnessReport class method) (nirs4all.pipeline.dagml.conformal_contracts.CalibratedRunResult class method) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationArtifact class method) (nirs4all.pipeline.portable_n4m_trained.PortableN4MTrainedPipeline class method) from_legacy_aggregate() (nirs4all.data.reduction.ReductionPlan class method) from_mapping() (nirs4all.api.native_retrain_lineage.NativeRetrainLineage class method) (nirs4all.api.tuning.OrderedSearchSpaceSpec class method) from_native_dir() (in module nirs4all.runtime) (nirs4all.pipeline.dagml.rt.RtResult class method) from_operators() (nirs4all.operators.models.sklearn.aom_fast.OperatorChain class method) from_package_json() (nirs4all.api.native_refit_result.NativeMethodsRefitResult class method) from_result() (nirs4all.sklearn.classifier.NIRSPipelineClassifier class method) from_run_result() (nirs4all.pipeline.dagml.rt.RtResult class method) from_source_outcome() (nirs4all.api.native_retrain_lineage.NativeRetrainLineage class method) from_sources() (nirs4all.data.raw_multisource.RawMultiSourceDataset class method) (nirs4all.data.relations.SampleRelationPlan class method) from_step_value() (nirs4all.data.raw_multisource.RepresentationPlan class method) (nirs4all.operators.data.rep_fusion.RepFusionConfig class method) (nirs4all.operators.data.repetition.RepetitionConfig class method) from_template() (in module nirs4all.api.generate) from_test_aggregation() (nirs4all.data.reduction.ReductionPlan class method) from_trace() (nirs4all.visualization.pipeline_diagram.PipelineDiagram class method) from_tuning_spec() (nirs4all.api.tuning.OrderedSearchSpaceSpec class method) FromAbsorbance (class in nirs4all.operators.transforms.signal_conversion) FrozenTransferTransform (class in nirs4all.api.general_transfer) FT (nirs4all.synthesis.instruments.MonochromatorType attribute) FT_NIR (nirs4all.synthesis.instruments.InstrumentCategory attribute) FULL (nirs4all.pipeline.retrainer.RetrainMode attribute) full_name (nirs4all.synthesis.benchmarks.BenchmarkDatasetInfo attribute) full_scale (nirs4all.synthesis.detectors.NoiseModelConfig attribute) FULL_TRAIN_REFIT (nirs4all.data.reduction.FitScope attribute) functional_groups (nirs4all.synthesis.procedural.ProceduralComponentConfig attribute) FunctionalGroupType (class in nirs4all.synthesis.procedural)

G

g0 (nirs4all.operators.models.sklearn.aom_fast.LowRankBase attribute) gain (nirs4all.synthesis.detectors.DetectorConfig attribute) (nirs4all.synthesis.fitter.InstrumentChain attribute) gamma (nirs4all.synthesis.components.NIRBand attribute) gaussian() (in module nirs4all.operators.transforms.signal) GaussianAdditiveNoise (class in nirs4all.operators.augmentation.spectral) GaussianSmoothingJitter (class in nirs4all.operators.augmentation.spectral) GEL (nirs4all.synthesis.prior.MatrixType attribute) GENERAL (nirs4all.synthesis.benchmarks.BenchmarkDomain attribute) general_archive_manifest() (in module nirs4all.pipeline.dagml.general_archive) generate() (in module nirs4all.api.generate) (nirs4all.synthesis.products.CategoryGenerator method) (nirs4all.synthesis.products.ProductGenerator method) (nirs4all.synthesis.sources.MultiSourceGenerator method) generate_all_variations() (nirs4all.synthesis.exporter.CSVVariationGenerator method) generate_batch() (nirs4all.synthesis.accelerated.AcceleratedGenerator method) generate_chains() (in module nirs4all.operators.models.sklearn.aom_fast) generate_classification_targets() (in module nirs4all.synthesis.targets) generate_component() (nirs4all.synthesis.procedural.ProceduralComponentGenerator method) generate_dataset_for_target() (nirs4all.synthesis.products.ProductGenerator method) generate_from_functional_groups() (nirs4all.synthesis.procedural.ProceduralComponentGenerator method) generate_from_indexer() (nirs4all.operators.filters.report.FilteringReportGenerator method) generate_library() (nirs4all.synthesis.procedural.ProceduralComponentGenerator method) generate_multi_source() (in module nirs4all.synthesis.sources) generate_names() (nirs4all.controllers.models.stacking.classification.FeatureNameGenerator method) generate_object_augmentation_combinations() (in module nirs4all.analysis.transfer_utils) generate_object_stacked_pipelines() (in module nirs4all.analysis.transfer_utils) generate_operator_variance() (nirs4all.synthesis.fitter.VarianceFitter method) generate_pca_variance() (nirs4all.synthesis.fitter.VarianceFitter method) generate_preflight() (in module nirs4all.api.generate) generate_product_samples() (in module nirs4all.synthesis.products) generate_regression_targets() (in module nirs4all.synthesis.targets) generate_report() (nirs4all.visualization.predictions.PredictionAnalyzer method) generate_run_id() (in module nirs4all.pipeline.run) generate_sample_ids (nirs4all.synthesis.builder.BuilderState attribute) generate_sample_metadata() (in module nirs4all.synthesis.metadata) generate_spectra_batch_accelerated() (in module nirs4all.synthesis.accelerated) generate_stacked_pipelines() (in module nirs4all.analysis.transfer_utils) generate_variant() (nirs4all.synthesis.procedural.ProceduralComponentGenerator method) generate_variants() (in module nirs4all.api.public_tuning) generate_voigt_profiles() (nirs4all.synthesis.accelerated.AcceleratedGenerator method) generate_voigt_profiles_accelerated() (in module nirs4all.synthesis.accelerated) generated_at (nirs4all.api.inspector_views.InspectorDataResponse attribute) generated_input_schema_sha256() (in module nirs4all.pipeline.dagml.multimodal_contracts) generated_prediction_contract() (in module nirs4all.pipeline.dagml.multimodal_contracts) generator_count (nirs4all.pipeline.config.generator.ValidationResult attribute) geometry (nirs4all.synthesis.measurement_modes.ReflectanceConfig attribute) get() (nirs4all.data.performance.cache.DataCache method) (nirs4all.data.predictions.PredictionResultsList method) (nirs4all.data.schema.validation.error_codes.ErrorRegistry class method) (nirs4all.pipeline.storage.artifacts.artifact_loader.LRUCache method) (nirs4all.visualization.prediction_cache.PredictionCache method) get_acceleration_speedup_estimate() (in module nirs4all.synthesis.accelerated) get_activation() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) get_all_predictions_metadata() (nirs4all.visualization.chart_utils.predictions_adapter.PredictionsAdapter method) get_all_source_mappings() (nirs4all.operators.data.merge.SourceBranchConfig method) get_all_zones_extended() (in module nirs4all.synthesis.wavenumber) get_all_zones_wavelength() (in module nirs4all.synthesis.wavenumber) get_artifact() (nirs4all.pipeline.bundle.loader.BundleArtifactProvider method) (nirs4all.pipeline.config.context.LoaderArtifactProvider method) (nirs4all.pipeline.minimal_predictor.MinimalArtifactProvider method) (nirs4all.pipeline.retrainer.RetrainArtifactProvider method) get_artifact_by_chain() (nirs4all.pipeline.config.context.LoaderArtifactProvider method) get_artifact_size() (in module nirs4all.pipeline.storage.artifacts.artifact_persistence) get_artifacts_for_chain_prefix() (nirs4all.pipeline.config.context.LoaderArtifactProvider method) get_artifacts_for_step() (nirs4all.pipeline.bundle.loader.BundleArtifactProvider method) (nirs4all.pipeline.config.context.LoaderArtifactProvider method) (nirs4all.pipeline.minimal_predictor.MinimalArtifactProvider method) (nirs4all.pipeline.retrainer.RetrainArtifactProvider method) get_available_metrics() (in module nirs4all.core.metrics) get_backend_info() (in module nirs4all.synthesis.accelerated) (in module nirs4all.utils.backend) get_benchmark_info() (in module nirs4all.synthesis.benchmarks) get_benchmark_spectral_properties() (in module nirs4all.synthesis.benchmarks) get_bias_variance() (in module nirs4all.api.inspector_views) get_branch_comparison() (in module nirs4all.api.inspector_views) get_branch_ids() (nirs4all.visualization.analysis.branch.BranchAnalyzer method) (nirs4all.visualization.predictions.PredictionAnalyzer method) get_branch_names() (nirs4all.visualization.analysis.branch.BranchAnalyzer method) get_branch_summary() (nirs4all.controllers.data.merge.DisjointMergeMetadata method) get_branch_topology() (in module nirs4all.api.inspector_views) get_branches() (nirs4all.visualization.predictions.PredictionAnalyzer method) get_cache_stats() (nirs4all.visualization.predictions.PredictionAnalyzer method) get_cached_predictions() (nirs4all.visualization.predictions.PredictionAnalyzer method) get_candlestick_data() (in module nirs4all.api.inspector_views) get_chain() (nirs4all.pipeline.storage.store_protocol.WorkspaceStoreProtocol method) get_chain_for_artifact() (nirs4all.pipeline.bundle.loader.BundleLoader method) get_column_mapping_summary() (nirs4all.controllers.data.merge.DisjointMergeMetadata method) get_combined_features() (nirs4all.synthesis.sources.MultiSourceResult method) get_component() (in module nirs4all.synthesis.components) get_component_weights() (nirs4all.synthesis.domains.DomainConfig method) get_concentration_matrix() (nirs4all.synthesis.fitter.ComponentFitter method) get_config() (in module nirs4all.core.logging.config) get_confusion_matrix() (in module nirs4all.api.inspector_views) get_controller_type() (nirs4all.operators.models.base.BaseModelOperator method) get_cross_dataset_summary() (nirs4all.visualization.analysis.transfer.PreprocPCAEvaluator method) get_datasets_by_domain() (in module nirs4all.synthesis.benchmarks) get_default_metrics() (in module nirs4all.core.metrics) get_default_noise_config() (in module nirs4all.synthesis.detectors) get_dependencies() (nirs4all.pipeline.storage.artifacts.artifact_registry.DependencyGraph method) get_dependents() (nirs4all.pipeline.storage.artifacts.artifact_registry.DependencyGraph method) get_detector_response() (in module nirs4all.synthesis.detectors) get_detector_wavelength_range() (in module nirs4all.synthesis.detectors) get_diagnostics() (nirs4all.operators.models.sklearn.aom_ridge.AOMLocalRidge method) (nirs4all.operators.models.sklearn.aom_ridge.AOMMultiBranchMKL method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeAutoSelector method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeBlender method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeClassifier method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgePLS method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgePLSCV method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeRegressor method) get_disjoint_branch_info() (in module nirs4all.controllers.models.stacking.branch_validator) get_domain_compatible_instruments() (in module nirs4all.synthesis.prior) get_domain_components() (in module nirs4all.synthesis.domains) get_domain_config() (in module nirs4all.synthesis.domains) get_domain_weight() (nirs4all.synthesis.prior.NIRSPriorConfig method) get_domains_for_component() (in module nirs4all.synthesis.domains) get_expansion_tree() (in module nirs4all.pipeline.config.generator) get_feature_branches() (nirs4all.operators.data.merge.MergeConfig method) get_feature_importance() (nirs4all.visualization.analysis.shap.ShapAnalyzer method) get_feature_importance_mapping() (nirs4all.controllers.models.stacking.classification.FeatureNameGenerator method) get_feature_names_out() (nirs4all.operators.transforms.feature_selection.FlexiblePCA method) (nirs4all.operators.transforms.feature_selection.FlexibleSVD method) (nirs4all.operators.transforms.nirs.WaveletFeatures method) (nirs4all.operators.transforms.nirs.WaveletPCA method) (nirs4all.operators.transforms.nirs.WaveletSVD method) (nirs4all.operators.transforms.sequence.SequenceSummary method) get_filter_info() (nirs4all.operators.models.sklearn.fckpls.FCKPLS method) get_filter_stats() (nirs4all.operators.filters.base.CompositeFilter method) (nirs4all.operators.filters.spectral_quality.SpectralQualityFilter method) (nirs4all.operators.filters.y_outlier.YOutlierFilter method) get_fold_artifacts() (nirs4all.pipeline.bundle.loader.BundleArtifactProvider method) (nirs4all.pipeline.config.context.LoaderArtifactProvider method) (nirs4all.pipeline.minimal_predictor.MinimalArtifactProvider method) (nirs4all.pipeline.retrainer.RetrainArtifactProvider method) get_fold_stability() (in module nirs4all.api.inspector_views) get_fold_weights() (nirs4all.pipeline.bundle.loader.BundleArtifactProvider method) (nirs4all.pipeline.minimal_predictor.MinimalArtifactProvider method) get_fractional_features() (nirs4all.operators.models.sklearn.fckpls.FCKPLS method) get_gpu_info() (in module nirs4all.utils.backend) get_heatmap_data() (in module nirs4all.api.inspector_views) get_histogram_data() (in module nirs4all.api.inspector_views) get_hyperparameter_data() (in module nirs4all.api.inspector_views) get_incompatible_strategy() (nirs4all.controllers.data.merge.SourceMergeConfig method) get_inspector_data() (in module nirs4all.api.inspector_views) get_instrument_typical_modes() (in module nirs4all.synthesis.prior) get_instrument_wavelength_info() (in module nirs4all.synthesis.instruments) get_instruments_by_category() (in module nirs4all.synthesis.instruments) get_interval_info() (nirs4all.operators.models.sklearn.ipls.IntervalPLS method) get_kernel_info() (nirs4all.operators.models.sklearn.fckpls.FractionalConvFeaturizer method) get_keyword_registry() (in module nirs4all.pipeline.keyword_registry) get_keyword_registry_schema() (in module nirs4all.pipeline.keyword_registry) get_legacy_engine_usage_counts() (in module nirs4all.pipeline.engine) get_mask() (nirs4all.operators.filters.base.CompositeFilter method) (nirs4all.operators.filters.native.NativeRoleFilter method) (nirs4all.operators.filters.spectral_quality.SpectralQualityFilter method) (nirs4all.operators.filters.y_outlier.YOutlierFilter method)

get_merge_mode() (nirs4all.operators.data.merge.MergeConfig method) get_merged_chains() (nirs4all.pipeline.bundle.loader.BundleLoader method) get_meta_model_sources() (nirs4all.pipeline.bundle.loader.BundleArtifactProvider method) get_metric_info() (in module nirs4all.pipeline.run) get_model_for_feature() (nirs4all.controllers.models.stacking.classification.MetaFeatureInfo method) get_model_scores() (nirs4all.controllers.data.merge.ModelSelector method) get_model_step() (nirs4all.pipeline.retrainer.ExtractedPipeline method) get_n_features() (nirs4all.controllers.models.stacking.classification.ClassificationFeatureExtractor method) get_n_features_per_model() (nirs4all.controllers.models.stacking.classification.ClassificationInfo method) get_n_splits() (nirs4all.controllers.models.pipeline_cv.PrecomputedFoldSplitter method) (nirs4all.operators.splitters.splitters.BinnedStratifiedGroupKFold method) (nirs4all.operators.splitters.splitters.CustomSplitter method) (nirs4all.operators.splitters.splitters.KBinsStratifiedSplitter method) (nirs4all.operators.splitters.splitters.KennardStoneSplitter method) (nirs4all.operators.splitters.splitters.KMeansSplitter method) (nirs4all.operators.splitters.splitters.SPlitSplitter method) (nirs4all.operators.splitters.splitters.SPXYFold method) (nirs4all.operators.splitters.splitters.SPXYGFold method) (nirs4all.operators.splitters.splitters.SPXYSplitter method) (nirs4all.operators.splitters.splitters.SystematicCircularSplitter method) get_native_capability_matrix() (in module nirs4all.api.native_capabilities) get_nir_overtones_for_fundamental() (in module nirs4all.synthesis.wavenumber) get_norm() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) get_num_classes() (nirs4all.controllers.models.factory.ModelFactory static method) get_num_samples() (in module nirs4all.data.types) get_or_compute() (nirs4all.visualization.prediction_cache.PredictionCache method) get_or_load() (nirs4all.data.performance.cache.DataCache method) get_outlier_mask() (nirs4all.operators.models.sklearn.robust_pls.RobustPLS method) get_params() (nirs4all.operators.methods.n4m_ops.MethodsPLS method) (nirs4all.operators.methods.n4m_ops.MethodsSNV method) (nirs4all.operators.models.base.BaseModelOperator method) (nirs4all.operators.models.sklearn.aom_pls_aomlib.AOMPLSAomlibRegressor method) (nirs4all.operators.models.sklearn.aom_ridge.AOMKernelizer method) (nirs4all.operators.models.sklearn.dipls.DiPLS method) (nirs4all.operators.models.sklearn.fckpls.FCKPLS method) (nirs4all.operators.models.sklearn.ikpls.IKPLS method) (nirs4all.operators.models.sklearn.ipls.IntervalPLS method) (nirs4all.operators.models.sklearn.kopls.KOPLS method) (nirs4all.operators.models.sklearn.lwpls.LWPLS method) (nirs4all.operators.models.sklearn.mbpls.MBPLS method) (nirs4all.operators.models.sklearn.oklmpls.OKLMPLS method) (nirs4all.operators.models.sklearn.opls.OPLS method) (nirs4all.operators.models.sklearn.oplsda.OPLSDA method) (nirs4all.operators.models.sklearn.recursive_pls.RecursivePLS method) (nirs4all.operators.models.sklearn.robust_pls.RobustPLS method) (nirs4all.operators.models.sklearn.simpls.SIMPLS method) (nirs4all.operators.models.sklearn.sparsepls.SparsePLS method) (nirs4all.operators.transforms.nirs.PyBaselineCorrection method) (nirs4all.operators.transforms.targets.RangeDiscretizer method) (nirs4all.pipeline.dagml.framework_estimator.DagMLFrameworkEstimator method) (nirs4all.pipeline.dagml.run_paths.DuplicationBranchMergeTransformer method) get_partitioner_routing() (nirs4all.pipeline.bundle.loader.BundleLoader method) get_pipeline_for_source() (nirs4all.operators.data.merge.SourceBranchConfig method) get_pp_name() (nirs4all.operators.data.repetition.RepetitionConfig method) get_prediction() (nirs4all.pipeline.storage.store_protocol.WorkspaceStoreProtocol method) get_prediction_configs() (nirs4all.operators.data.merge.MergeConfig method) get_preferred_layout() (nirs4all.controllers.models.autogluon_model.AutoGluonModelController method) (nirs4all.controllers.models.jax_model.JaxModelController method) (nirs4all.controllers.models.tensorflow_model.TensorFlowModelController method) (nirs4all.controllers.models.torch_model.PyTorchModelController method) get_preprocessing_by_name() (nirs4all.analysis.selector.TransferPreprocessingSelector method) get_preprocessing_impact() (in module nirs4all.api.inspector_views) get_preset() (in module nirs4all.analysis.presets) (in module nirs4all.pipeline.config.generator) get_preset_info() (in module nirs4all.pipeline.config.generator) get_process_rss_mb() (in module nirs4all.utils.memory) get_product_template() (in module nirs4all.synthesis.products) get_quality_breakdown() (nirs4all.operators.filters.spectral_quality.SpectralQualityFilter method) get_quality_metric_convergence() (nirs4all.visualization.analysis.transfer.PreprocPCAEvaluator method) get_rankings_data() (in module nirs4all.api.inspector_views) get_records() (nirs4all.core.logging.handlers.BufferedHandler method) get_refit_artifact() (nirs4all.pipeline.config.context.LoaderArtifactProvider method) get_required_metadata_columns() (nirs4all.pipeline.bundle.loader.BundleLoader method) get_response_at() (nirs4all.synthesis.detectors.DetectorSpectralResponse method) get_robustness_summary_schema() (in module nirs4all.api.robustness) get_run_id() (in module nirs4all.core.logging.context) get_scatter_data() (in module nirs4all.api.inspector_views) get_selected_features() (nirs4all.operators.models.sklearn.sparsepls.SparsePLS method) get_selected_operators() (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeClassifier method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeRegressor method) get_selection_criterion() (nirs4all.operators.data.merge.MergeConfig method) get_shape_mismatch_strategy() (nirs4all.operators.data.merge.MergeConfig method) get_source_indices() (nirs4all.controllers.data.merge.SourceMergeConfig method) get_source_name() (nirs4all.operators.data.repetition.RepetitionConfig method) get_split_grouping_capability() (in module nirs4all.controllers.splitters.split) get_stats() (in module nirs4all.core.metrics) (nirs4all.visualization.prediction_cache.PredictionCache method) get_step() (nirs4all.pipeline.retrainer.ExtractedPipeline method) get_step_info() (nirs4all.pipeline.bundle.loader.BundleLoader method) get_step_mode() (nirs4all.pipeline.retrainer.RetrainConfig method) get_step_operator_type() (nirs4all.pipeline.bundle.loader.BundleArtifactProvider method) get_strategy() (in module nirs4all.pipeline.config.generator) (nirs4all.controllers.data.merge.SourceMergeConfig method) get_symbols() (in module nirs4all.core.logging.formatters) get_temperature_effect_regions() (in module nirs4all.synthesis.environmental) get_template_metadata() (nirs4all.pipeline.storage.library.PipelineLibrary method) get_text_color() (nirs4all.visualization.chart_utils.annotator.ChartAnnotator static method) get_top_models() (nirs4all.visualization.chart_utils.predictions_adapter.PredictionsAdapter method) get_transforms() (nirs4all.analysis.results.TransferResult method) get_tuning_recommendations() (nirs4all.synthesis.fitter.RealDataFitter method) get_tuning_space_schema() (in module nirs4all.api.tuning) get_tuning_summary_schema() (in module nirs4all.pipeline.dagml.tuning_contracts) get_unequal_strategy() (nirs4all.operators.data.repetition.RepetitionConfig method) get_validation_summary() (in module nirs4all.config.validator) get_version() (in module nirs4all.cli.main) get_xy() (nirs4all.controllers.models.meta_model.MetaModelController method) get_zone_wavelength_range() (in module nirs4all.synthesis.wavenumber) GLOBAL (nirs4all.operators.data.merge.SelectionProtocol attribute) global_mean (nirs4all.synthesis.fitter.PreprocessingInference attribute) (nirs4all.synthesis.fitter.SpectralProperties attribute) global_range (nirs4all.synthesis.fitter.PreprocessingInference attribute) (nirs4all.synthesis.fitter.SpectralProperties attribute) global_slope_mean (nirs4all.synthesis.fitter.FittedParameters attribute) global_slope_std (nirs4all.synthesis.fitter.FittedParameters attribute) global_std (nirs4all.synthesis.fitter.SpectralProperties attribute) GlobalAveragePooling1D (class in nirs4all.operators.models.jax.nicon) (class in nirs4all.operators.models.pytorch.nicon) gpu_devices (nirs4all.pipeline.dagml.resources.DagMLExecutionResources attribute) GRANULAR (nirs4all.synthesis.prior.MatrixType attribute) graph_vocabulary() (in module nirs4all.pipeline.dagml.methods_classification) GRATING (nirs4all.synthesis.instruments.MonochromatorType attribute) GridStrategy (class in nirs4all.pipeline.config.generator) group (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationCohortRow attribute) group_by (nirs4all.api.inspector_views.BiasVarianceRequest attribute) (nirs4all.api.inspector_views.BiasVarianceResponse attribute) (nirs4all.controllers.splitters.split.ResolvedSplitGroups attribute) (nirs4all.pipeline.analysis.splitter_config.SplitterConfig attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationSpec attribute) group_by_sample_id() (nirs4all.pipeline.dagml.estimator.DagMLPredictIdentityFrame method) (nirs4all.pipeline.dagml.fit_identity.DagMLCalibrationIdentityFrame method) group_by_sample_int() (nirs4all.pipeline.dagml.estimator.DagMLFitIdentityFrame method) group_calibrators (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationArtifact attribute) group_column (nirs4all.api.calibrate.ConformalCalibrationData attribute) (nirs4all.api.tuning.TuningScoreData attribute) (nirs4all.api.tuning.TuningWinner attribute) group_handling (nirs4all.controllers.splitters.split.SplitGroupingCapability attribute) group_keys (nirs4all.pipeline.dagml.conformal_contracts.CalibratedPredictionBlock attribute) group_label (nirs4all.api.inspector_views.BiasVarianceEntry attribute) group_names (nirs4all.synthesis.builder.BuilderState attribute) group_required (nirs4all.controllers.splitters.split.SplitGroupingCapability attribute) group_samples_by_value_mapping() (in module nirs4all.controllers.data.branch_utils) groups (nirs4all.api.calibrate.ConformalCalibrationData attribute) (nirs4all.api.tuning.TuningConformalScoreCalibration attribute) (nirs4all.api.tuning.TuningScoreData attribute) (nirs4all.data.repetition_detection.RepetitionGroups attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationCohortManifest property) (nirs4all.pipeline.dagml.estimator.DagMLFitIdentityFrame attribute) (nirs4all.pipeline.dagml.estimator.DagMLPredictIdentityFrame attribute) (nirs4all.pipeline.dagml.fit_identity.DagMLCalibrationIdentityFrame attribute) (nirs4all.pipeline.dagml.pipeline_objective_compiler.CompiledPipelineObjective attribute) groups_for_rows() (nirs4all.data.multimodal.MultimodalSpectroDataset method)

H

h_bond_strength (nirs4all.synthesis.procedural.ProceduralComponentConfig attribute) h_bond_variability (nirs4all.synthesis.procedural.ProceduralComponentConfig attribute) haar_only() (in module nirs4all.operators.transforms.presets) HANDHELD (nirs4all.synthesis.instruments.InstrumentCategory attribute) handles() (nirs4all.pipeline.config.generator.CartesianStrategy class method) (nirs4all.pipeline.config.generator.ChainStrategy class method) (nirs4all.pipeline.config.generator.ExpansionStrategy class method) (nirs4all.pipeline.config.generator.GridStrategy class method) (nirs4all.pipeline.config.generator.LogRangeStrategy class method) (nirs4all.pipeline.config.generator.OrStrategy class method) (nirs4all.pipeline.config.generator.RangeStrategy class method) (nirs4all.pipeline.config.generator.SampleStrategy class method) (nirs4all.pipeline.config.generator.ZipStrategy class method) HardAOMChainPLSRidge (class in nirs4all.operators.models.sklearn.aom_fast) has_artifacts_for_step() (nirs4all.pipeline.bundle.loader.BundleArtifactProvider method) (nirs4all.pipeline.config.context.LoaderArtifactProvider method) (nirs4all.pipeline.minimal_predictor.MinimalArtifactProvider method) (nirs4all.pipeline.retrainer.RetrainArtifactProvider method) has_bands_in_range() (nirs4all.synthesis.components.SpectralComponent method) has_boundary_rise_left (nirs4all.synthesis.fitter.SpectralProperties attribute) has_boundary_rise_right (nirs4all.synthesis.fitter.SpectralProperties attribute) has_branches (nirs4all.api.inspector_views.BranchTopologyResponse attribute) has_branches_without_merge (nirs4all.pipeline.analysis.topology.PipelineTopology attribute) has_cartesian_keyword() (in module nirs4all.pipeline.config.generator) has_chain_keyword() (in module nirs4all.pipeline.config.generator) has_concat_merge (nirs4all.pipeline.analysis.topology.PipelineTopology attribute) has_detector_rolloff (nirs4all.synthesis.fitter.EdgeArtifactInference attribute) has_edge_artifacts (nirs4all.synthesis.fitter.EdgeArtifactInference attribute) has_edge_curvature (nirs4all.synthesis.fitter.EdgeArtifactInference attribute) has_errors (nirs4all.data.schema.validation.error_codes.DiagnosticReport property) has_feature_dim_asymmetry (nirs4all.controllers.data.merge.AsymmetryReport attribute) has_feature_merge (nirs4all.pipeline.analysis.topology.PipelineTopology attribute) has_features (nirs4all.controllers.data.merge.BranchAnalysisResult attribute) has_grid_keyword() (in module nirs4all.pipeline.config.generator) has_header (nirs4all.data.detection.detector.DetectionResult attribute) has_interactive_display() (in module nirs4all.visualization.display) has_local_finetune (nirs4all.pipeline.dagml.late_tuning.LateFusionTuningRecipe attribute) has_log_range_keyword() (in module nirs4all.pipeline.config.generator) has_mixed_merge (nirs4all.pipeline.analysis.topology.PipelineTopology attribute) has_model_asymmetry (nirs4all.controllers.data.merge.AsymmetryReport attribute) has_model_count_asymmetry (nirs4all.controllers.data.merge.AsymmetryReport attribute) has_models (nirs4all.controllers.data.merge.BranchAnalysisResult attribute) has_moisture_effects (nirs4all.synthesis.fitter.EnvironmentalInference attribute) has_multi_source (nirs4all.pipeline.analysis.topology.PipelineTopology attribute) has_or_keyword() (in module nirs4all.pipeline.config.generator)

has_partitioner_routing() (nirs4all.pipeline.bundle.loader.BundleLoader method) has_pending_tombstones() (nirs4all.pipeline.storage.array_store.ArrayStore method) has_per_branch_config() (nirs4all.operators.data.merge.MergeConfig method) has_preset() (in module nirs4all.pipeline.config.generator) has_probabilities (nirs4all.controllers.models.stacking.classification.ClassificationInfo attribute) has_range_keyword() (in module nirs4all.pipeline.config.generator) has_repetitions (nirs4all.data.repetition_detection.RepetitionGroups property) has_sample_keyword() (in module nirs4all.pipeline.config.generator) has_scatter_effects (nirs4all.synthesis.fitter.ScatteringInference attribute) has_separation_branch (nirs4all.pipeline.analysis.topology.PipelineTopology attribute) has_sequential_models (nirs4all.pipeline.analysis.topology.PipelineTopology attribute) has_stacking (nirs4all.api.inspector_views.BranchTopologyResponse attribute) (nirs4all.pipeline.analysis.topology.PipelineTopology attribute) has_stray_light (nirs4all.synthesis.fitter.EdgeArtifactInference attribute) has_temperature_effects (nirs4all.synthesis.fitter.EnvironmentalInference attribute) has_truncated_peaks (nirs4all.synthesis.fitter.EdgeArtifactInference attribute) has_zip_keyword() (in module nirs4all.pipeline.config.generator) hash (nirs4all.pipeline.run.DatasetInfo attribute) head_size (nirs4all.operators.models.jax.nicon.TransformerBlock attribute) HEADER_PATTERNS (nirs4all.data.detection.detector.AutoDetector attribute) header_unit (nirs4all.data.detection.detector.DetectionResult attribute) headers (nirs4all.data.raw_multisource.AlignedMaterialization attribute) (nirs4all.pipeline.execution.preprocessing.PreprocessingReplay attribute) headers() (nirs4all.data.multimodal.MultimodalSpectroDataset method) headers_by_source (nirs4all.data.raw_multisource.RawMultiSourceDataset attribute) HeaderUnit (class in nirs4all.data.schema.config) HeatmapCell (class in nirs4all.api.inspector_views) HeatmapChart (class in nirs4all.visualization.charts.heatmap) HeatmapRequest (class in nirs4all.api.inspector_views) HeatmapResponse (class in nirs4all.api.inspector_views) HeteroscedasticNoiseAugmenter (class in nirs4all.operators.augmentation.synthesis) hidden_factors (nirs4all.synthesis.builder.BuilderState attribute) HistogramBin (class in nirs4all.api.inspector_views) HistogramResponse (class in nirs4all.api.inspector_views) hit_count (nirs4all.data.performance.cache.CacheEntry attribute) HOLDOUT (nirs4all.operators.data.merge.StackingSelectionProtocol attribute) HostHpoCandidate (class in nirs4all.pipeline.dagml.host_hpo_candidate) HostSearchOptimizer (class in nirs4all.pipeline.dagml.host_search_checkpoint) hpo (nirs4all.pipeline.dagml.native_pls_phase_controls.NativePlsPhaseControls attribute) hpo_resume_package_json() (nirs4all.api.native_result.NativeMethodsRunResult method) hpo_scope (nirs4all.pipeline.dagml.native_pls_phase_controls.NativePlsPhaseControls attribute) hydrate_host_artifacts() (in module nirs4all.pipeline.dagml.host_artifacts) HYDROXYL (nirs4all.synthesis.procedural.FunctionalGroupType attribute) HyperparameterPoint (class in nirs4all.api.inspector_views) HyperparameterRequest (class in nirs4all.api.inspector_views) HyperparameterResponse (class in nirs4all.api.inspector_views)

I

IASLS (class in nirs4all.operators.transforms.nirs) id (nirs4all.api.inspector_views.TopologyNode attribute) (nirs4all.data.predictions.PredictionResult property) (nirs4all.pipeline.run.Run attribute) (nirs4all.pipeline.run.TemplateInfo attribute) (nirs4all.visualization.pipeline_diagram.PipelineNode attribute) id_preprocessing() (in module nirs4all.operators.transforms.presets) IdentityFeaturizer (class in nirs4all.operators.models.sklearn.oklmpls) IdentityOperator (class in nirs4all.operators.models.sklearn.aom_pls) IGNORE (nirs4all.data.schema.config.NAPolicy attribute) IKPLS (class in nirs4all.operators.models.sklearn.ikpls) illumination_angle (nirs4all.synthesis.measurement_modes.ReflectanceConfig attribute) ils_sigma (nirs4all.synthesis.fitter.InstrumentChain attribute) ils_sigma_bounds (nirs4all.synthesis.fitter.DerivativeAwareForwardModelFitter attribute) (nirs4all.synthesis.fitter.ForwardModelFitter attribute) IModPoly (class in nirs4all.operators.transforms.nirs) impact (nirs4all.api.inspector_views.PreprocessingImpactEntry attribute) import_artifacts_to_registry() (nirs4all.pipeline.bundle.loader.BundleLoader method) import_class() (nirs4all.controllers.models.factory.ModelFactory static method) import_object() (nirs4all.controllers.models.factory.ModelFactory static method) import_presets() (in module nirs4all.pipeline.config.generator) import_template() (nirs4all.pipeline.storage.library.PipelineLibrary method) improvement_pct (nirs4all.analysis.results.TransferResult attribute) IMPUTE_DECLARED (nirs4all.data.relations.MissingRepetitionPolicy attribute) (nirs4all.data.relations.MissingSourcePolicy attribute) (nirs4all.operators.data.merge.MissingPredictionPolicy attribute) IMPUTED (nirs4all.data.relations.QualityFlag attribute) inception1D() (in module nirs4all.operators.models.tensorflow.generic) Inception_Module_A() (in module nirs4all.operators.models.tensorflow.legacy.inception_1d_cnn) Inception_Module_B() (in module nirs4all.operators.models.tensorflow.legacy.inception_1d_cnn) Inception_Module_C() (in module nirs4all.operators.models.tensorflow.legacy.inception_1d_cnn) Inceptionv1_Module() (in module nirs4all.operators.models.tensorflow.legacy.inception_1d_cnn) Inceptionv2_Module() (in module nirs4all.operators.models.tensorflow.legacy.inception_1d_cnn) incidence_angle (nirs4all.synthesis.measurement_modes.ATRConfig attribute) include_augmented (nirs4all.api.calibrate.ConformalCalibrationData attribute) (nirs4all.api.tuning.TuningScoreData attribute) (nirs4all.api.tuning.TuningWinner attribute) (nirs4all.pipeline.config.context.DataSelector attribute) include_combinations (nirs4all.synthesis.procedural.ProceduralComponentConfig attribute) include_fit_identity_diagnostics (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingContractFactoryCompiler attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingRequestCompiler attribute) (nirs4all.pipeline.dagml.training_compiler.PreparedDagMLTrainingCompiler attribute) include_headers (nirs4all.synthesis.exporter.ExportConfig attribute) include_identity_chain (nirs4all.operators.models.sklearn.aom_fast.ChainGenerationConfig attribute) include_index (nirs4all.synthesis.exporter.ExportConfig attribute) include_length_ (nirs4all.operators.transforms.sequence.SequenceSummary attribute) include_metadata (nirs4all.synthesis.builder.BuilderState attribute) include_original (nirs4all.operators.data.merge.MergeConfig attribute) include_overtones (nirs4all.synthesis.procedural.ProceduralComponentConfig attribute) independent_unit_ids (nirs4all.data.multimodal.MultimodalSpectroDataset property) index (nirs4all.api.tuning.SearchSpaceParameter attribute) (nirs4all.core.logging.context.BranchContext attribute) (nirs4all.core.logging.context.SourceContext attribute) INDEX (nirs4all.data.schema.config.HeaderUnit attribute) indices (nirs4all.controllers.models.components.prediction_assembler.PartitionPrediction attribute) infer_output_shape() (in module nirs4all.pipeline.analysis.shape_inference) infer_relative_search_space() (nirs4all.optimization.optuna.BinarySearchSampler method) inference_features (nirs4all.operators.data.merge.StackingFitContract attribute) inferred_domain (nirs4all.synthesis.fitter.FittedParameters attribute) inferred_instrument (nirs4all.synthesis.fitter.FittedParameters attribute) INFO (nirs4all.data.schema.validation.error_codes.ErrorSeverity attribute) info (nirs4all.pipeline.config.generator.ValidationResult attribute) INFO (nirs4all.pipeline.config.generator.ValidationSeverity attribute) info (nirs4all.synthesis.benchmarks.LoadedBenchmarkDataset attribute) info() (nirs4all.synthesis.components.SpectralComponent method) (nirs4all.synthesis.products.ProductTemplate method) INGAAS (nirs4all.synthesis.instruments.DetectorType attribute) INGAAS_EXTENDED (nirs4all.synthesis.instruments.DetectorType attribute) init_global_random_state() (in module nirs4all.pipeline.runner) inner_fold_sets (nirs4all.pipeline.dagml.native_pls_fold_hpo.NativePlsFoldPlan attribute) input_layout_shape (nirs4all.visualization.pipeline_diagram.PipelineNode attribute) input_level (nirs4all.data.reduction.ReductionPlan attribute) input_shape (nirs4all.operators.models.jax.generic.JaxMLPClassifier attribute) (nirs4all.operators.models.jax.generic.JaxMLPRegressor attribute) input_step (nirs4all.pipeline.execution.preprocessing.PreprocessingReplay attribute) inspect_format_file() (in module nirs4all.api.dataset_inspection) inspect_portable_predictor_archive_v2() (in module nirs4all.api.portable_archive) inspect_space() (nirs4all.api.tuning.NativeTuning method) inspect_tuning_space() (in module nirs4all.api.tuning) inspect_workspace_format() (in module nirs4all.workspace.compat) InspectorDataResponse (class in nirs4all.api.inspector_views) InspectorViewError instantiate() (nirs4all.api.general_transfer.BoundTransferOperator method) instrument (nirs4all.synthesis.builder.BuilderState attribute) instrument_given_domain (nirs4all.synthesis.prior.NIRSPriorConfig attribute) instrument_inference (nirs4all.synthesis.fitter.FittedParameters attribute) instrument_wavelength_grid (nirs4all.synthesis.builder.BuilderState attribute) InstrumentalBroadeningAugmenter (class in nirs4all.operators.augmentation.synthesis) InstrumentCategory (class in nirs4all.synthesis.instruments) InstrumentChain (class in nirs4all.synthesis.fitter) InstrumentInference (class in nirs4all.synthesis.fitter) IntegerKBinsDiscretizer (class in nirs4all.operators.transforms.targets) integration_time_ms (nirs4all.synthesis.detectors.DetectorConfig attribute) integrity_check() (nirs4all.pipeline.storage.array_store.ArrayStore method) intensity_change_per_degree (nirs4all.synthesis.environmental.TemperatureEffectParams attribute) interaction_strength (nirs4all.synthesis.builder.BuilderState attribute) internal_id_map() (nirs4all.data.relations.NormalizedObservationTable method) INTERNAL_KEYS (nirs4all.data.serialization.serializer.ConfigSerializer attribute) internal_sample_id (nirs4all.data.relations.ObservationRecord attribute)

interval() (nirs4all.api.tuning.TunedSingleEstimatorConformalResult method) (nirs4all.pipeline.dagml.conformal_contracts.CalibratedPredictionBlock method) interval_coverages (nirs4all.api.tuning.TunedSingleEstimatorConformalResult property) interval_selection() (in module nirs4all.operators.augmentation.splines) IntervalPLS (class in nirs4all.operators.models.sklearn.ipls) intervals (nirs4all.pipeline.dagml.conformal_contracts.CalibratedPredictionBlock attribute) (nirs4all.pipeline.dagml.native_archive_replay.NativeArchivePrediction attribute) invalid_value() (nirs4all.data.schema.validation.error_codes.DiagnosticBuilder method) invalidate() (nirs4all.data.performance.cache.DataCache method) InvalidMetaModelArtifactError inverse_numeric() (nirs4all.pipeline.dagml.target_capture.CapturedTargetTransform method) inverse_transform() (nirs4all.api.general_transfer.FrozenTransferTransform method) (nirs4all.operators.transforms.feature_selection.FlexiblePCA method) (nirs4all.operators.transforms.feature_selection.FlexibleSVD method) (nirs4all.operators.transforms.nirs.LogTransform method) (nirs4all.operators.transforms.nirs.ReflectanceToAbsorbance method) (nirs4all.operators.transforms.scalers.Normalize method) (nirs4all.operators.transforms.scalers.SimpleScale method) (nirs4all.operators.transforms.signal.Baseline method) (nirs4all.operators.transforms.signal_conversion.FractionToPercent method) (nirs4all.operators.transforms.signal_conversion.FromAbsorbance method) (nirs4all.operators.transforms.signal_conversion.KubelkaMunk method) (nirs4all.operators.transforms.signal_conversion.PercentToFraction method) (nirs4all.operators.transforms.signal_conversion.SignalTypeConverter method) (nirs4all.operators.transforms.signal_conversion.ToAbsorbance method) (nirs4all.operators.transforms.targets.IntegerKBinsDiscretizer method) (nirs4all.operators.transforms.targets.RangeDiscretizer method) (nirs4all.pipeline.dagml.target_capture.CapturedTargetTransform method) is_asymmetric (nirs4all.controllers.data.merge.AsymmetryReport attribute) is_auto_mode() (nirs4all.operators.data.merge.SourceBranchConfig method) is_better_score() (in module nirs4all.pipeline.run) is_binary (nirs4all.controllers.models.stacking.classification.ClassificationInfo property) is_cartesian (nirs4all.data.raw_multisource.RepresentationPlan property) is_classification (nirs4all.controllers.models.stacking.classification.ClassificationInfo property) (nirs4all.controllers.models.stacking.classification.StackingTaskType property) is_classification_choice() (in module nirs4all.pipeline.dagml.structural_classification) is_configured() (in module nirs4all.core.logging.config) is_disjoint (nirs4all.controllers.data.merge.DisjointBranchAnalysis attribute) is_disjoint_branch() (in module nirs4all.controllers.data.merge) (in module nirs4all.controllers.models.stacking.branch_validator) is_executable (nirs4all.data.raw_multisource.RepresentationPlan property) is_extension_valid() (nirs4all.operators.models.sklearn.aom_fast.ChainGrammar method) is_gpu_available() (in module nirs4all.synthesis.accelerated) is_grid_param_generator_spec() (in module nirs4all.pipeline.dagml_bridge) is_heterogeneous (nirs4all.controllers.data.merge.DisjointMergeMetadata attribute) is_higher_better() (nirs4all.visualization.chart_utils.normalizer.ScoreNormalizer static method) (nirs4all.visualization.chart_utils.predictions_adapter.PredictionsAdapter static method) is_host_finetune() (in module nirs4all.pipeline.dagml.host_finetune) is_identical() (nirs4all.data.serialization.serializer.ConfigDiff method) is_ikpls_available() (in module nirs4all.utils.backend) is_jax_available() (in module nirs4all.utils.backend) is_keras_available() (in module nirs4all.utils.backend) is_linear_at_apply() (nirs4all.operators.models.sklearn.aom_pls.LinearSpectralOperator method) is_meta_estimator() (nirs4all.controllers.models.factory.ModelFactory static method) is_methods_model_choice() (in module nirs4all.pipeline.dagml.structural_multimodal) is_methods_multimodal_package() (in module nirs4all.pipeline.dagml.methods_multimodal) is_multi_source() (nirs4all.data.multimodal.MultimodalSpectroDataset method) is_multiclass (nirs4all.controllers.models.stacking.classification.ClassificationInfo property) is_named_torch_model() (in module nirs4all.pipeline.dagml.named_torch) is_native_pls_phase_package() (in module nirs4all.pipeline.dagml.native_pls_phase_replay) is_nested (nirs4all.controllers.models.stacking.branch_validator.BranchInfo attribute) is_nir_region() (in module nirs4all.synthesis.wavenumber) is_normalized() (nirs4all.synthesis.components.SpectralComponent method) is_param_generator_spec() (in module nirs4all.pipeline.dagml_bridge) is_predict() (nirs4all.pipeline.retrainer.StepMode method) is_preprocessed (nirs4all.synthesis.fitter.FittedParameters attribute) (nirs4all.synthesis.fitter.PreprocessingInference attribute) is_preset_reference() (in module nirs4all.pipeline.config.generator) is_pure_cartesian_node() (in module nirs4all.pipeline.config.generator) is_pure_chain_node() (in module nirs4all.pipeline.config.generator) is_pure_grid_node() (in module nirs4all.pipeline.config.generator) is_pure_log_range_node() (in module nirs4all.pipeline.config.generator) is_pure_or_node() (in module nirs4all.pipeline.config.generator) is_pure_range_node() (in module nirs4all.pipeline.config.generator) is_pure_sample_node() (in module nirs4all.pipeline.config.generator) is_pure_zip_node() (in module nirs4all.pipeline.config.generator) is_real_cv_fold() (in module nirs4all.data.reduction) is_relational (nirs4all.data.relations.RelationConfig property) is_resolved (nirs4all.api.result.LazyModelRefitResult property) is_separation_merge (nirs4all.operators.data.merge.MergeConfig attribute) is_serializable() (in module nirs4all.pipeline.storage.artifacts.artifact_persistence) is_splitter_reference() (in module nirs4all.pipeline.analysis.splitter_config) is_stale() (nirs4all.data.performance.cache.CacheEntry method) is_strict_linear (nirs4all.operators.models.sklearn.aom_pls.LinearSpectralOperator attribute) is_structural_tuning_pipeline() (in module nirs4all.pipeline.dagml.structural_tuning) is_task_compatible() (nirs4all.data.reduction.ReductionPlan method) is_tensorflow_available() (in module nirs4all.utils.backend) is_topology_choice() (in module nirs4all.pipeline.dagml.structural_topology) is_torch_available() (in module nirs4all.utils.backend) is_torch_choice() (in module nirs4all.pipeline.dagml.structural_torch) is_train() (nirs4all.pipeline.retrainer.StepMode method) is_trained (nirs4all.api.native_session.NativeMethodsSession property) is_valid (nirs4all.controllers.models.stacking.reconstructor.ValidationResult property) (nirs4all.data.schema.validation.error_codes.DiagnosticReport property) (nirs4all.data.schema.validation.validators.ValidationResult attribute) (nirs4all.pipeline.config.generator.ValidationResult attribute) is_visible_region() (in module nirs4all.synthesis.wavenumber) is_y_grouping (nirs4all.operators.data.repetition.RepetitionConfig property) iter_with_progress() (in module nirs4all.pipeline.config.generator)

J

JAX (nirs4all.synthesis.accelerated.AcceleratorBackend attribute) JaxMLPClassifier (class in nirs4all.operators.models.jax.generic) JaxMLPRegressor (class in nirs4all.operators.models.jax.generic)

JaxModelController (class in nirs4all.controllers.models.jax_model) JaxModelWrapper (class in nirs4all.controllers.models.jax_wrapper) join_key (nirs4all.data.relations.RepetitionSpec property) JSON (nirs4all.data.serialization.serializer.SerializationFormat attribute)

K

KBinsStratifiedSplitter (class in nirs4all.operators.splitters.splitters) KennardStoneSplitter (class in nirs4all.operators.splitters.splitters) kernel_apply() (nirs4all.operators.models.sklearn.aom_fast.LowRankBase method) kernel_matrix_lowrank() (nirs4all.operators.models.sklearn.aom_fast.LowRankBase method) kernel_size (nirs4all.operators.models.jax.nicon.DepthwiseConv1D attribute) (nirs4all.operators.models.jax.nicon.SeparableConv1D attribute) key (nirs4all.api.inspector_views.ScoreRef attribute) (nirs4all.data.performance.cache.CacheEntry attribute) keyword (nirs4all.pipeline.config.context.StepMetadata attribute) keyword_registry_export() (in module nirs4all.cli.commands.keyword_registry) keywords (nirs4all.pipeline.config.generator.CartesianStrategy attribute) (nirs4all.pipeline.config.generator.ChainStrategy attribute) (nirs4all.pipeline.config.generator.ExpansionStrategy attribute) (nirs4all.pipeline.config.generator.GridStrategy attribute) (nirs4all.pipeline.config.generator.LogRangeStrategy attribute) (nirs4all.pipeline.config.generator.OrStrategy attribute) (nirs4all.pipeline.config.generator.RangeStrategy attribute) (nirs4all.pipeline.config.generator.SampleStrategy attribute) (nirs4all.pipeline.config.generator.ZipStrategy attribute)

kind (nirs4all.api.robustness.RobustnessScenarioSpec attribute) KMeansSplitter (class in nirs4all.operators.splitters.splitters) KOPLS (class in nirs4all.operators.models.sklearn.kopls) KPLS (in module nirs4all.operators.models.sklearn.nlpls) KUBELKA_MUNK (nirs4all.data.schema.config.SignalTypeEnum attribute) (nirs4all.synthesis.scattering.ScatteringModel attribute) kubelka_munk_linearity (nirs4all.synthesis.fitter.SpectralProperties attribute) KubelkaMunk (class in nirs4all.operators.transforms.signal_conversion) kurtosis (nirs4all.synthesis.fitter.SpectralProperties attribute) kwargs (nirs4all.pipeline.retrainer.StepMode attribute)

L

label (nirs4all.api.inspector_views.BranchComparisonEntry attribute) (nirs4all.api.inspector_views.CandlestickCategory attribute) (nirs4all.api.inspector_views.TopologyNode attribute) (nirs4all.controllers.models.pipeline_cv.PrecomputedFoldSplitter attribute) (nirs4all.visualization.pipeline_diagram.PipelineNode attribute) labels (nirs4all.api.inspector_views.ConfusionMatrixResponse attribute) lambdas (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) lane (nirs4all.api.advanced_capabilities.AdvancedApiCapabilityDecision attribute) lane_record() (in module nirs4all.pipeline.dagml.methods_lane) late_partial_archive_contract() (in module nirs4all.pipeline.dagml.multimodal_contracts) late_partial_stack_contract() (in module nirs4all.pipeline.dagml.multimodal_contracts) LateFusionTuningRecipe (class in nirs4all.pipeline.dagml.late_tuning) LayerNorm1D (class in nirs4all.operators.models.pytorch.nicon) layers (nirs4all.operators.models.jax.nicon.DynamicModel attribute) layout (nirs4all.pipeline.config.context.DataSelector attribute) (nirs4all.pipeline.dagml.late_tuning.LateFusionTuningRecipe attribute) lazy_import() (in module nirs4all.utils.backend) LazyModelRefitResult (class in nirs4all.api.result) LazyModule (class in nirs4all.utils.lazy) LEAKAGE_CHECK (nirs4all.core.logging.events.EventType attribute) LeakedReducerStateError learned_state_sha256() (in module nirs4all.pipeline.dagml.torch_topology_replay) learner101() (in module nirs4all.operators.models.tensorflow.legacy.resnet_v2_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn) learner152() (in module nirs4all.operators.models.tensorflow.legacy.resnet_v2_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn) learner18() (in module nirs4all.operators.models.tensorflow.legacy.resnet_v2_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn) learner34() (in module nirs4all.operators.models.tensorflow.legacy.resnet_v2_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn) learner50() (in module nirs4all.operators.models.tensorflow.legacy.resnet_v2_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn) learning_curve_points() (in module nirs4all.pipeline.analysis.model_diagnostics) learning_rate (nirs4all.pipeline.retrainer.RetrainConfig attribute) left_edge_intensity (nirs4all.synthesis.fitter.EdgeArtifactInference attribute) left_edge_noise_std (nirs4all.synthesis.fitter.SpectralProperties attribute) left_edge_slope (nirs4all.synthesis.fitter.SpectralProperties attribute) legacy_fallback_metrics() (in module nirs4all.pipeline.engine) legacy_score_column (nirs4all.api.inspector_views.ScoreRef attribute) LegacyEngineUsageWarning legacyScoreColumn (nirs4all.api.inspector_views.ScoreRef attribute) level (nirs4all.core.logging.events.LogEvent attribute) (nirs4all.data.reduction.PredictionUnitId attribute) license (nirs4all.synthesis.benchmarks.BenchmarkDatasetInfo attribute) lineage (nirs4all.data.raw_multisource.AlignedMaterialization attribute) (nirs4all.data.raw_multisource.RepresentationPlan attribute) lineage_warning (nirs4all.pipeline.explain_lineage.RelationExplainLineage attribute) LinearBaselineDrift (class in nirs4all.operators.augmentation.spectral) LinearSpectralOperator (class in nirs4all.operators.models.sklearn.aom_pls) link_by (nirs4all.data.relations.RelationConfig attribute) (nirs4all.data.relations.RepetitionSpec attribute) linspace (nirs4all.synthesis.accelerated.AcceleratedArrays attribute) lipid_band_intensity (nirs4all.synthesis.fitter.SpectralProperties attribute) LIQUID (nirs4all.synthesis.prior.MatrixType attribute) list_archive_members() (in module nirs4all.data.loaders.archive_loader) list_benchmark_datasets() (in module nirs4all.synthesis.benchmarks) list_categories() (in module nirs4all.synthesis.components) list_controller_manifests() (in module nirs4all.runtime) list_datasets() (nirs4all.pipeline.storage.array_store.ArrayStore method) list_detector_types() (in module nirs4all.synthesis.detectors) list_domains() (in module nirs4all.synthesis.domains) list_instrument_archetypes() (in module nirs4all.synthesis.instruments) list_instrument_wavelength_grids() (in module nirs4all.synthesis.instruments) list_methods() (nirs4all.operators.transforms.nirs.PyBaselineCorrection static method) list_of_2D_sets() (in module nirs4all.operators.transforms.presets) list_presets() (in module nirs4all.analysis.presets) (in module nirs4all.pipeline.config.generator) list_product_categories() (in module nirs4all.synthesis.products) list_product_domains() (in module nirs4all.synthesis.products) list_product_templates() (in module nirs4all.synthesis.products) list_templates() (nirs4all.pipeline.storage.library.PipelineLibrary method) LOAD (nirs4all.core.logging.events.EventType attribute) load() (in module nirs4all.pipeline.storage.artifacts.artifact_persistence) (nirs4all.data.loaders.archive_loader.EnhancedZipLoader method) (nirs4all.data.loaders.archive_loader.TarLoader method) (nirs4all.data.loaders.csv_loader_new.CSVLoader method) (nirs4all.data.loaders.excel_loader.ExcelLoader method) (nirs4all.data.loaders.matlab_loader.MatlabLoader method) (nirs4all.data.loaders.numpy_loader.NumpyLoader method) (nirs4all.data.loaders.parquet_loader.ParquetLoader method) (nirs4all.data.serialization.serializer.ConfigSerializer method) (nirs4all.synthesis.fitter.FittedParameters class method)

load_archive() (nirs4all.api.native_refit_result.NativeMethodsRefitResult class method) load_artifact() (nirs4all.pipeline.storage.store_protocol.WorkspaceStoreProtocol method) load_artifacts() (nirs4all.api.robustness.RobustnessReport class method) load_batch() (nirs4all.pipeline.storage.array_store.ArrayStore method) load_benchmark_dataset() (in module nirs4all.synthesis.benchmarks) load_bundle() (in module nirs4all.pipeline.bundle.loader) load_calibrated_result() (in module nirs4all.api.calibrate) load_conformal_result_archive() (in module nirs4all.pipeline.dagml.conformal_store) load_conformal_result_bundle() (in module nirs4all.pipeline.dagml.conformal_store) load_conformal_result_store() (in module nirs4all.pipeline.dagml.conformal_store) load_csv() (in module nirs4all.data.loaders.csv_loader_new) load_dataset() (nirs4all.pipeline.storage.array_store.ArrayStore method) load_dataset_for_analysis() (in module nirs4all.api.dataset_inspection) load_excel() (in module nirs4all.data.loaders.excel_loader) load_external_directory() (nirs4all.pipeline.dagml.autogluon_estimator.DagMLAutoGluonEstimator method) load_general_workspace_chain() (in module nirs4all.pipeline.dagml.general_workspace) load_json() (nirs4all.api.robustness.RobustnessReport class method) (nirs4all.pipeline.dagml.conformal_contracts.CalibratedRunResult class method) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationArtifact class method) (nirs4all.pipeline.dagml.conformal_store.ConformalStoreManifest class method) load_matlab() (in module nirs4all.data.loaders.matlab_loader) load_model() (nirs4all.controllers.models.autogluon_model.AutoGluonModelController method) load_native_archive_session() (in module nirs4all.api.session) load_native_tuning() (in module nirs4all.api.public_tuning) load_package() (nirs4all.api.native_refit_result.NativeMethodsRefitResult class method) load_parquet() (in module nirs4all.data.loaders.parquet_loader) (nirs4all.api.robustness.RobustnessReport class method) load_prediction_file() (in module nirs4all.api.dataset_inspection) load_results() (nirs4all.visualization.analysis.shap.ShapAnalyzer static method) load_session() (in module nirs4all.api.session) load_single() (nirs4all.pipeline.storage.array_store.ArrayStore method) load_template() (nirs4all.pipeline.storage.library.PipelineLibrary method) load_workspace_calibrated_predict_result() (in module nirs4all.api.calibrate) load_workspace_calibrated_result() (in module nirs4all.api.calibrate) load_workspace_predict_result() (in module nirs4all.api.result) load_workspace_predict_results() (in module nirs4all.api.result) load_workspace_robustness_report() (in module nirs4all.api.robustness) load_workspace_tuning_result() (in module nirs4all.api.tuning) load_XY() (in module nirs4all.data.loaders.loader) loaded_predictor_replay (nirs4all.pipeline.dagml.native_client.DagMLNativeCapabilities attribute) LoadedBenchmarkDataset (class in nirs4all.synthesis.benchmarks) LoaderArtifactProvider (class in nirs4all.pipeline.config.context) LoaderError LOADING (nirs4all.data.schema.validation.error_codes.ErrorCategory attribute) local_implementations (nirs4all.pipeline.dagml.raw_training_lowerer.RawArrayDagMLTrainingCompiler attribute) LocalClipping (class in nirs4all.operators.augmentation.spectral) LocalMixupAugmenter (class in nirs4all.operators.augmentation.spectral) LocalStandardNormalVariate (class in nirs4all.operators.transforms.scalers) LocalWavelengthWarp (class in nirs4all.operators.augmentation.spectral) location (nirs4all.data.schema.validation.error_codes.DiagnosticMessage attribute) log (nirs4all.synthesis.accelerated.AcceleratedArrays attribute) LOG_1_R (nirs4all.data.schema.config.SignalTypeEnum attribute) log_summary() (nirs4all.controllers.data.merge.DisjointMergeMetadata method) log_transform() (in module nirs4all.operators.transforms.nirs) log_warnings() (nirs4all.controllers.data.merge.DisjointMergeMetadata method) LogConfig (class in nirs4all.core.logging.config) LogEvent (class in nirs4all.core.logging.events) LOGNORMAL (nirs4all.synthesis.products.VariationType attribute) LogRangeStrategy (class in nirs4all.pipeline.config.generator) LogTransform (class in nirs4all.operators.transforms.nirs) lower (nirs4all.pipeline.dagml.conformal_contracts.ConformalIntervalBlock attribute) (nirs4all.pipeline.dagml.native_archive_replay.NativeArchiveConformalInterval attribute) lower_classifier_choices() (in module nirs4all.pipeline.dagml.structural_classification) lower_constrained_operator_pipeline() (in module nirs4all.pipeline.dagml_bridge) lower_deterministic_finetune_params_to_generators() (in module nirs4all.pipeline.dagml.finetune_lowering) lower_fold_file_holdout() (in module nirs4all.pipeline.dagml.folds) lower_raw_array_training_contracts() (in module nirs4all.pipeline.dagml.raw_training_lowerer) lower_strict_methods_terminal_prediction() (in module nirs4all.pipeline.dagml.terminal_predict_lowerer) lower_topology_choices() (in module nirs4all.pipeline.dagml.structural_topology) lower_torch_choices() (in module nirs4all.pipeline.dagml.structural_torch) lower_typed_choices() (in module nirs4all.pipeline.dagml.structural_multimodal) LowRankBase (class in nirs4all.operators.models.sklearn.aom_fast) LRUCache (class in nirs4all.pipeline.storage.artifacts.artifact_loader) LVF (nirs4all.synthesis.instruments.MonochromatorType attribute) LWPLS (class in nirs4all.operators.models.sklearn.lwpls)

M

mae (nirs4all.api.robustness.RobustnessMetricSet attribute) MAE (nirs4all.operators.data.merge.DisjointSelectionCriterion attribute) main() (in module nirs4all.cli.main) (in module nirs4all.pipeline.dagml.generated_hpo_worker) (in module nirs4all.pipeline.dagml.generated_worker) (in module nirs4all.pipeline.dagml.host_hpo_candidate_worker) (in module nirs4all.pipeline.dagml.process_adapter) make_cache_key() (in module nirs4all.data.performance.cache) make_conformal_prediction_score_extractor() (in module nirs4all.pipeline.dagml.pipeline_objective) make_key() (nirs4all.visualization.prediction_cache.PredictionCache static method) make_observation_id() (in module nirs4all.data.relations) make_prediction_score_extractor() (in module nirs4all.pipeline.dagml.pipeline_objective) makeRecord() (nirs4all.core.logging.config.Nirs4allLogger method) manifest (nirs4all.pipeline.dagml.rt.RtResult attribute) mask (nirs4all.data.meta_features.AlignedMetaFeatures attribute) MASK (nirs4all.data.relations.MissingSourcePolicy attribute) (nirs4all.operators.data.merge.MissingPredictionPolicy attribute) MATCH_BY (nirs4all.data.raw_multisource.ComboSelection attribute) matches() (nirs4all.controllers.charts.augmentation.AugmentationChartController class method) (nirs4all.controllers.charts.exclusion.ExclusionChartController class method) (nirs4all.controllers.charts.folds.FoldChartController class method) (nirs4all.controllers.charts.spectra.SpectraChartController class method) (nirs4all.controllers.charts.spectral_distribution.SpectralDistributionController class method) (nirs4all.controllers.charts.targets.YChartController class method) (nirs4all.controllers.data.auto_transfer_preproc.AutoTransferPreprocessingController class method) (nirs4all.controllers.data.branch.BranchController class method) (nirs4all.controllers.data.concat_transform.ConcatAugmentationController class method) (nirs4all.controllers.data.exclude.ExcludeController class method) (nirs4all.controllers.data.feature_augmentation.FeatureAugmentationController class method) (nirs4all.controllers.data.feature_selection.FeatureSelectionController class method) (nirs4all.controllers.data.merge.MergeController class method) (nirs4all.controllers.data.rep_fusion.RepFusionController class method) (nirs4all.controllers.data.repetition.RepToPPController class method) (nirs4all.controllers.data.repetition.RepToSourcesController class method) (nirs4all.controllers.data.resampler.ResamplerController class method) (nirs4all.controllers.data.sample_augmentation.SampleAugmentationController class method) (nirs4all.controllers.data.tag.TagController class method) (nirs4all.controllers.flow.dummy.DummyController class method) (nirs4all.controllers.models.autogluon_model.AutoGluonModelController class method) (nirs4all.controllers.models.jax_model.JaxModelController class method) (nirs4all.controllers.models.meta_model.MetaModelController class method) (nirs4all.controllers.models.residual_model.ResidualModelController class method) (nirs4all.controllers.models.tensorflow_model.TensorFlowModelController class method) (nirs4all.controllers.models.torch_model.PyTorchModelController class method) (nirs4all.controllers.splitters.fold_file_loader.FoldFileLoaderController class method) (nirs4all.controllers.splitters.split.CrossValidatorController class method) (nirs4all.controllers.transforms.y_transformer.YTransformerMixinController class method) matches_task_type() (in module nirs4all.core.task_type) materialization_manifest (nirs4all.data.relation_replay_manifest.RelationReplayManifest attribute) materialize() (nirs4all.data.raw_multisource.RawMultiSourceDataset method) (nirs4all.operators.data.rep_fusion.RepFusionConfig method) materialize_relation_table() (in module nirs4all.data.loaders.loader) MatlabLoader (class in nirs4all.data.loaders.matlab_loader) matmul (nirs4all.synthesis.accelerated.AcceleratedArrays attribute) matrix() (nirs4all.operators.models.sklearn.aom_fast.OperatorChain method) (nirs4all.operators.models.sklearn.aom_pls.LinearSpectralOperator method) matrix_given_domain (nirs4all.synthesis.prior.NIRSPriorConfig attribute) MatrixBuilder (class in nirs4all.visualization.chart_utils.matrix_builder) MatrixType (class in nirs4all.synthesis.prior) max (nirs4all.api.inspector_views.BranchComparisonEntry attribute) (nirs4all.api.inspector_views.CandlestickCategory attribute) max_abs_error (nirs4all.api.robustness.RobustnessMetricSet attribute) max_aliases (nirs4all.api.dataset_documents.DatasetDocumentLimits attribute) max_bytes (nirs4all.api.dataset_documents.DatasetDocumentLimits attribute) max_chain_depth (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) max_combinations (nirs4all.synthesis.procedural.ProceduralComponentConfig attribute) max_combos_per_sample (nirs4all.data.raw_multisource.CombinationPlan attribute) (nirs4all.data.raw_multisource.RepresentationPlan attribute) max_depth (nirs4all.api.dataset_documents.DatasetDocumentLimits attribute) (nirs4all.api.inspector_views.BranchTopologyResponse attribute) (nirs4all.operators.models.sklearn.aom_fast.ChainGenerationConfig attribute) (nirs4all.operators.models.sklearn.aom_fast.ChainGrammar attribute) max_directory_entries (nirs4all.api.dataset_documents.DatasetDocumentLimits attribute) max_nodes (nirs4all.api.dataset_documents.DatasetDocumentLimits attribute) max_overtone_order (nirs4all.synthesis.procedural.ProceduralComponentConfig attribute) max_per_role (nirs4all.operators.models.sklearn.aom_fast.ChainGrammar attribute) max_score (nirs4all.api.inspector_views.HistogramResponse attribute) max_size_um (nirs4all.synthesis.scattering.ParticleSizeDistribution attribute) max_stacking_depth (nirs4all.pipeline.analysis.topology.PipelineTopology attribute) max_total_combos (nirs4all.data.raw_multisource.CombinationPlan attribute) (nirs4all.data.raw_multisource.RepresentationPlan attribute) max_total_rows (nirs4all.data.raw_multisource.CombinationPlan attribute) (nirs4all.data.raw_multisource.RepresentationPlan attribute) max_value (nirs4all.api.inspector_views.HeatmapResponse attribute) (nirs4all.synthesis.domains.ConcentrationPrior attribute) (nirs4all.synthesis.products.ComponentVariation attribute) MaxPooling1D (class in nirs4all.operators.models.jax.nicon) MBPLS (class in nirs4all.operators.models.sklearn.mbpls) MCT (nirs4all.synthesis.instruments.DetectorType attribute) mean (nirs4all.api.inspector_views.BranchComparisonEntry attribute) (nirs4all.api.inspector_views.CandlestickCategory attribute) MEAN (nirs4all.data.reduction.ReductionMethod attribute) (nirs4all.data.schema.config.AggregateMethod attribute) mean (nirs4all.operators.models.sklearn.aom_fast.LowRankBase attribute) (nirs4all.synthesis.products.ComponentVariation attribute) MEAN_CENTERED (nirs4all.synthesis.fitter.PreprocessingType attribute) mean_curvature (nirs4all.synthesis.fitter.SpectralProperties attribute) mean_interval_score (nirs4all.pipeline.dagml.conformal_contracts.ConformalMetricSet attribute) mean_score (nirs4all.api.inspector_views.HistogramResponse attribute) mean_size_um (nirs4all.synthesis.scattering.ParticleSizeDistribution attribute) mean_slope (nirs4all.synthesis.fitter.SpectralProperties attribute) mean_spectrum (nirs4all.synthesis.fitter.PCAVarianceParams attribute) (nirs4all.synthesis.fitter.SpectralProperties attribute) mean_width (nirs4all.pipeline.dagml.conformal_contracts.ConformalMetricSet attribute) mean_with (nirs4all.api.inspector_views.PreprocessingImpactEntry attribute) mean_without (nirs4all.api.inspector_views.PreprocessingImpactEntry attribute) measurement_mode (nirs4all.synthesis.benchmarks.BenchmarkDatasetInfo attribute) (nirs4all.synthesis.builder.BuilderState attribute) (nirs4all.synthesis.domains.DomainConfig attribute) (nirs4all.synthesis.fitter.FittedParameters attribute) measurement_mode_confidence (nirs4all.synthesis.fitter.FittedParameters attribute) MeasurementModeInference (class in nirs4all.synthesis.fitter) median (nirs4all.api.inspector_views.CandlestickCategory attribute) MEDIAN (nirs4all.data.reduction.ReductionMethod attribute) (nirs4all.data.schema.config.AggregateMethod attribute) median_width (nirs4all.pipeline.dagml.conformal_contracts.ConformalMetricSet attribute) memory_budget (nirs4all.data.raw_multisource.CombinationPlan attribute) (nirs4all.data.raw_multisource.RepresentationPlan attribute) MEMS (nirs4all.synthesis.instruments.DetectorType attribute) merge() (nirs4all.controllers.models.stacking.reconstructor.ValidationResult method) (nirs4all.pipeline.config.generator.ValidationResult method) merge_after (nirs4all.operators.data.merge.SourceBranchConfig attribute) merge_branches() (nirs4all.controllers.data.merge.MergeController class method) merge_lane_records() (in module nirs4all.pipeline.dagml.methods_lane) merge_strategy (nirs4all.operators.data.merge.SourceBranchConfig attribute) merge_type (nirs4all.controllers.data.merge.DisjointMergeMetadata attribute) (nirs4all.pipeline.analysis.topology.ModelNodeInfo attribute) MergeConfig (class in nirs4all.operators.data.merge) MergeConfigParser (class in nirs4all.controllers.data.merge) MergeController (class in nirs4all.controllers.data.merge) merged_array (nirs4all.controllers.data.merge.DisjointMergeResult attribute) MergeMode (class in nirs4all.operators.data.merge) MergeReport (class in nirs4all.data.predictions) message (nirs4all.controllers.models.stacking.reconstructor.ValidationError attribute) (nirs4all.controllers.models.stacking.reconstructor.ValidationWarning attribute) (nirs4all.core.logging.events.LogEvent attribute) (nirs4all.data.schema.validation.error_codes.DiagnosticMessage attribute) (nirs4all.data.schema.validation.validators.ValidationError attribute) (nirs4all.data.schema.validation.validators.ValidationWarning attribute) (nirs4all.pipeline.config.generator.ValidationError attribute) (nirs4all.workspace.compat.WorkspaceFormatInfo attribute) message_template (nirs4all.data.schema.validation.error_codes.ErrorCode attribute) messages (nirs4all.data.schema.validation.error_codes.DiagnosticReport attribute) meta (nirs4all.pipeline.dagml.late_tuning.LateFusionTuningRecipe attribute) META_AWARE (nirs4all.operators.data.merge.SelectionProtocol attribute) META_FEATURE (nirs4all.data.reduction.ReductionRole attribute) meta_feature_plan (nirs4all.data.relation_replay_manifest.RelationReplayManifest attribute) (nirs4all.operators.data.merge.MergeConfig attribute) meta_model (nirs4all.core.logging.context.StackContext attribute) meta_row_domain (nirs4all.operators.data.merge.MetaFeaturePlan attribute) meta_training_features (nirs4all.operators.data.merge.StackingFitContract attribute) metadata (nirs4all.api.calibrate.ConformalCalibrationData attribute) (nirs4all.api.robustness.RobustnessReport attribute) (nirs4all.api.tuning.TuningConformalScoreCalibration attribute) (nirs4all.api.tuning.TuningScoreData attribute) (nirs4all.api.tuning.TuningWinner attribute) (nirs4all.controllers.models.components.prediction_assembler.PredictionRecord attribute) (nirs4all.data.relations.ObservationRecord attribute) (nirs4all.data.relations.SourceObservations attribute) (nirs4all.pipeline.dagml.conformal_contracts.CalibratedRunResult attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationCohortRow attribute) (nirs4all.pipeline.dagml.pipeline_objective_compiler.CompiledPipelineObjective attribute) (nirs4all.pipeline.execution.result.ArtifactMeta attribute) (nirs4all.pipeline.retrainer.ExtractedPipeline attribute) (nirs4all.pipeline.retrainer.RetrainConfig attribute) (nirs4all.pipeline.run.DatasetInfo attribute) (nirs4all.synthesis.benchmarks.LoadedBenchmarkDataset attribute) (nirs4all.synthesis.sources.MultiSourceResult attribute) (nirs4all.visualization.pipeline_diagram.PipelineNode attribute) metadata_by_level (nirs4all.data.raw_multisource.RawMultiSourceDataset attribute) metadata_by_sample_id() (nirs4all.pipeline.dagml.estimator.DagMLFitIdentityFrame method) (nirs4all.pipeline.dagml.estimator.DagMLPredictIdentityFrame method) (nirs4all.pipeline.dagml.fit_identity.DagMLCalibrationIdentityFrame method) metadata_by_sample_int() (nirs4all.pipeline.dagml.estimator.DagMLFitIdentityFrame method) metadata_columns (nirs4all.api.calibrate.ConformalCalibrationData attribute) (nirs4all.api.tuning.TuningScoreData attribute) (nirs4all.api.tuning.TuningWinner attribute) METADATA_PARTITIONER (nirs4all.operators.data.merge.BranchType attribute) metadata_rows (nirs4all.pipeline.dagml.estimator.DagMLFitIdentityFrame attribute) (nirs4all.pipeline.dagml.estimator.DagMLPredictIdentityFrame attribute) (nirs4all.pipeline.dagml.fit_identity.DagMLCalibrationIdentityFrame attribute) MetaFeatureAdapter (class in nirs4all.operators.data.merge) MetaFeatureAlignmentError MetaFeatureInfo (class in nirs4all.controllers.models.stacking.classification) MetaFeaturePlan (class in nirs4all.operators.data.merge) MetaModelController (class in nirs4all.controllers.models.meta_model) MetaModelError MetaModelSerializationError MetaRowDomain (class in nirs4all.operators.data.merge) method (nirs4all.api.tuning.TuningCalibration attribute) (nirs4all.data.reduction.ReductionPlan attribute) (nirs4all.pipeline.dagml.conformal_contracts.CalibratedPredictionBlock attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationSpec attribute) (nirs4all.pipeline.dagml.conformal_contracts.SplitConformalCalibrator attribute) (nirs4all.synthesis.targets.ClassSeparationConfig attribute) methods_binding_status() (in module nirs4all.operators.methods.n4m_ops) methods_hpo_operation (nirs4all.pipeline.dagml.raw_training_lowerer.RawArrayDagMLTrainingCompiler attribute) methods_input_blocks() (in module nirs4all.pipeline.dagml.methods_multimodal) methods_inputs (nirs4all.pipeline.dagml.estimator.DagMLReplayExecution attribute) (nirs4all.pipeline.dagml.estimator.DagMLTrainingExecution attribute) (nirs4all.pipeline.dagml.terminal_predict_lowerer.StrictMethodsTerminalPredictionExecution attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLPreparedTrainingContracts attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingRequestContracts attribute) methods_library_mode (nirs4all.api.native_witness.NativeMethodsExecutionClaim attribute) (nirs4all.api.native_witness.NativeMethodsTerminalExecutionClaim attribute) methods_library_path (nirs4all.pipeline.dagml.core_archive_replay.CoreArchiveValidation attribute) (nirs4all.pipeline.dagml.estimator.DagMLReplayExecution attribute) (nirs4all.pipeline.dagml.estimator.DagMLTrainingExecution attribute) (nirs4all.pipeline.dagml.raw_replay_lowerer.RawArrayMethodsPortableRefitReplayCompiler attribute) (nirs4all.pipeline.dagml.raw_training_lowerer.RawArrayDagMLTrainingCompiler attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLPreparedTrainingContracts attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingRequestContracts attribute) methods_library_sha256 (nirs4all.pipeline.dagml.core_archive_replay.CoreArchiveValidation attribute) methods_model_in_pipeline() (in module nirs4all.pipeline.dagml.methods_multimodal) methods_multimodal_search_request (nirs4all.pipeline.dagml.methods_multimodal.MethodsMultimodalRunResult attribute) methods_multimodal_tuning_evidence (nirs4all.pipeline.dagml.methods_multimodal.MethodsMultimodalRunResult attribute) MethodsMultimodalRunResult (class in nirs4all.pipeline.dagml.methods_multimodal) MethodsN4mmReplayCallbacks (class in nirs4all.pipeline.dagml.methods_replay) MethodsPLS (class in nirs4all.operators.methods.n4m_ops) MethodsPortableReplayError MethodsSNV (class in nirs4all.operators.methods.n4m_ops) METHYL (nirs4all.synthesis.procedural.FunctionalGroupType attribute) METHYLENE (nirs4all.synthesis.procedural.FunctionalGroupType attribute) metric (nirs4all.api.inspector_views.ScoreRef attribute) (nirs4all.api.result.LazyModelRefitResult property) (nirs4all.api.result.ModelRefitResult attribute) (nirs4all.api.tuning.NativeTuning attribute) (nirs4all.api.tuning.TuningScoreData attribute) (nirs4all.api.tuning.TuningWinner attribute) METRIC (nirs4all.core.logging.events.EventType attribute) (nirs4all.data.reduction.ReductionAxis attribute) metric (nirs4all.pipeline.config.context.BestChainEntry attribute) (nirs4all.pipeline.dagml.pipeline_objective.PipelineObjectiveResult attribute) (nirs4all.pipeline.execution.refit.config_extractor.RefitCriterion attribute) (nirs4all.pipeline.run.RunConfig attribute) (nirs4all.synthesis.validation.MetricResult attribute) metric() (nirs4all.core.logging.config.Nirs4allLogger method) metric_results (nirs4all.synthesis.validation.SpectralRealismScore attribute) MetricResult (class in nirs4all.synthesis.validation) metrics (nirs4all.analysis.results.TransferResult attribute) (nirs4all.api.inspector_views.TopologyNode attribute) (nirs4all.api.robustness.RobustnessScenarioResult attribute) (nirs4all.api.robustness.RobustnessSliceResult attribute) (nirs4all.core.logging.events.LogEvent attribute) metrics() (nirs4all.api.tuning.TunedSingleEstimatorConformalResult method) (nirs4all.pipeline.dagml.conformal_contracts.CalibratedRunResult method) MIE_APPROX (nirs4all.synthesis.scattering.ScatteringModel attribute) min (nirs4all.api.inspector_views.BranchComparisonEntry attribute) (nirs4all.api.inspector_views.CandlestickCategory attribute) min_observations_ (nirs4all.operators.transforms.sequence.SequenceSummary attribute) min_score (nirs4all.api.inspector_views.HistogramResponse attribute) min_sensitivity (nirs4all.operators.augmentation.edge_artifacts.DetectorModel attribute) min_size_um (nirs4all.synthesis.scattering.ParticleSizeDistribution attribute) min_value (nirs4all.api.inspector_views.HeatmapResponse attribute) (nirs4all.synthesis.domains.ConcentrationPrior attribute) (nirs4all.synthesis.products.ComponentVariation attribute) MinimalArtifactProvider (class in nirs4all.pipeline.minimal_predictor) MinimalPredictor (class in nirs4all.pipeline.minimal_predictor) MISSING (nirs4all.data.relations.QualityFlag attribute) missing_field() (nirs4all.data.schema.validation.error_codes.DiagnosticBuilder method) missing_prediction_policy (nirs4all.operators.data.merge.MetaFeaturePlan attribute) missing_repetition_policy (nirs4all.data.raw_multisource.RepresentationPlan attribute) (nirs4all.data.relations.RepetitionSpec attribute) missing_source_policy (nirs4all.data.raw_multisource.RepresentationPlan attribute) (nirs4all.data.relations.RepetitionSpec attribute) MissingDependencyError MissingPredictionPolicy (class in nirs4all.operators.data.merge) MissingRepetitionPolicy (class in nirs4all.data.relations) MissingSourcePolicy (class in nirs4all.data.relations) mitigation (nirs4all.api.advanced_capabilities.AdvancedApiCapabilityDecision attribute) MixupAugmenter (class in nirs4all.operators.augmentation.spectral) MLP() (in module nirs4all.operators.models.tensorflow.generic) mode (nirs4all.api.robustness.RobustnessReport attribute) (nirs4all.pipeline.config.context.PipelineState attribute) (nirs4all.pipeline.retrainer.RetrainConfig attribute) (nirs4all.pipeline.retrainer.StepMode attribute) mode1_cm (nirs4all.synthesis.wavenumber.CombinationBandResult attribute) mode2_cm (nirs4all.synthesis.wavenumber.CombinationBandResult attribute) mode_given_category (nirs4all.synthesis.prior.NIRSPriorConfig attribute) MODEL (nirs4all.core.logging.events.EventType attribute) (nirs4all.data.reduction.ReductionAxis attribute) model (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) (nirs4all.pipeline.execution.preprocessing.FoldPreprocessedModel attribute) model_bundle (nirs4all.api.calibrate.ConformalCalibrationData attribute) model_class (nirs4all.api.inspector_views.FoldScoreEntry attribute) (nirs4all.api.inspector_views.HyperparameterPoint attribute) (nirs4all.api.inspector_views.ScatterPoint attribute) (nirs4all.pipeline.analysis.topology.ModelNodeInfo attribute) model_config (nirs4all.api.inspector_views.BiasVarianceEntry attribute) (nirs4all.api.inspector_views.BiasVarianceRequest attribute) (nirs4all.api.inspector_views.BiasVarianceResponse attribute) (nirs4all.api.inspector_views.BranchComparisonEntry attribute) (nirs4all.api.inspector_views.BranchComparisonRequest attribute) (nirs4all.api.inspector_views.BranchComparisonResponse attribute) (nirs4all.api.inspector_views.BranchTopologyResponse attribute) (nirs4all.api.inspector_views.CandlestickCategory attribute) (nirs4all.api.inspector_views.CandlestickRequest attribute) (nirs4all.api.inspector_views.CandlestickResponse attribute) (nirs4all.api.inspector_views.ConfusionMatrixCell attribute) (nirs4all.api.inspector_views.ConfusionMatrixRequest attribute) (nirs4all.api.inspector_views.ConfusionMatrixResponse attribute) (nirs4all.api.inspector_views.FoldScoreEntry attribute) (nirs4all.api.inspector_views.FoldStabilityRequest attribute) (nirs4all.api.inspector_views.FoldStabilityResponse attribute) (nirs4all.api.inspector_views.HeatmapCell attribute) (nirs4all.api.inspector_views.HeatmapRequest attribute) (nirs4all.api.inspector_views.HeatmapResponse attribute) (nirs4all.api.inspector_views.HistogramBin attribute) (nirs4all.api.inspector_views.HistogramResponse attribute) (nirs4all.api.inspector_views.HyperparameterPoint attribute) (nirs4all.api.inspector_views.HyperparameterRequest attribute) (nirs4all.api.inspector_views.HyperparameterResponse attribute) (nirs4all.api.inspector_views.InspectorDataResponse attribute) (nirs4all.api.inspector_views.PreprocessingImpactEntry attribute) (nirs4all.api.inspector_views.PreprocessingImpactRequest attribute) (nirs4all.api.inspector_views.PreprocessingImpactResponse attribute) (nirs4all.api.inspector_views.RankingsResponse attribute) (nirs4all.api.inspector_views.ScatterPoint attribute) (nirs4all.api.inspector_views.ScatterRequest attribute) (nirs4all.api.inspector_views.ScatterResponse attribute) (nirs4all.api.inspector_views.ScoreRef attribute) (nirs4all.api.inspector_views.TopologyNode attribute) (nirs4all.data.schema.config.FoldConfig attribute) (nirs4all.data.schema.config.FoldDefinition attribute) (nirs4all.data.schema.config.PartitionConfig attribute) model_count (nirs4all.controllers.data.merge.BranchAnalysisResult attribute) model_counts (nirs4all.controllers.data.merge.AsymmetryReport attribute) MODEL_FILE (nirs4all.pipeline.resolver.SourceType attribute) model_filter (nirs4all.operators.data.merge.MergeConfig attribute) model_id (nirs4all.controllers.models.components.identifier_generator.ModelIdentifiers attribute) model_name (nirs4all.api.inspector_views.ScatterPoint attribute) (nirs4all.api.result.ModelRefitResult attribute) (nirs4all.api.tuning.TuningWinner attribute) (nirs4all.data.predictions.PredictionResult property) (nirs4all.pipeline.config.context.BestChainEntry attribute) model_names (nirs4all.controllers.data.merge.BranchAnalysisResult attribute) model_node_id() (in module nirs4all.pipeline.dagml.cli_runner) model_nodes (nirs4all.pipeline.analysis.topology.PipelineTopology attribute) model_path (nirs4all.api.calibrate.ConformalCalibrationData attribute) model_selection_protocol (nirs4all.operators.data.merge.StackingFitContract attribute) model_step_index (nirs4all.pipeline.bundle.loader.BundleMetadata attribute) (nirs4all.pipeline.retrainer.ExtractedPipeline attribute) ModelFactory (class in nirs4all.controllers.models.factory) ModelIdentifiers (class in nirs4all.controllers.models.components.identifier_generator) ModelNodeInfo (class in nirs4all.pipeline.analysis.topology) ModelRefitResult (class in nirs4all.api.result) ModelSelector (class in nirs4all.controllers.data.merge) ModPoly (class in nirs4all.operators.transforms.nirs) module nirs4all.analysis.playground_dataset nirs4all.analysis.playground_distances nirs4all.analysis.playground_execution nirs4all.analysis.playground_facade nirs4all.analysis.playground_metrics nirs4all.analysis.playground_partition nirs4all.analysis.playground_prepare nirs4all.analysis.playground_projections nirs4all.analysis.playground_statistics nirs4all.analysis.playground_steps nirs4all.analysis.playground_types nirs4all.analysis.presets nirs4all.analysis.projections nirs4all.analysis.results nirs4all.analysis.selector nirs4all.analysis.transfer_metrics nirs4all.analysis.transfer_utils nirs4all.api.advanced_capabilities nirs4all.api.calibrate nirs4all.api.dagml_training nirs4all.api.dataset_documents nirs4all.api.dataset_inspection nirs4all.api.explain nirs4all.api.general_explain nirs4all.api.general_retrain nirs4all.api.general_synthesis nirs4all.api.general_transfer nirs4all.api.generate nirs4all.api.inspector_json nirs4all.api.inspector_normalization nirs4all.api.inspector_views nirs4all.api.library_playground nirs4all.api.native_archive_training nirs4all.api.native_capabilities nirs4all.api.native_refit_result nirs4all.api.native_result nirs4all.api.native_retrain_lineage nirs4all.api.native_session nirs4all.api.native_training nirs4all.api.native_witness nirs4all.api.portable_archive nirs4all.api.predict nirs4all.api.public_results nirs4all.api.public_tuning nirs4all.api.result nirs4all.api.retrain nirs4all.api.retrain_capabilities nirs4all.api.robustness nirs4all.api.run nirs4all.api.run_selection nirs4all.api.session nirs4all.api.studio_lineage nirs4all.api.studio_scientific nirs4all.api.studio_scientific_general nirs4all.api.tuning nirs4all.api.workspace_chain_snapshot nirs4all.cli.commands.artifacts nirs4all.cli.commands.config nirs4all.cli.commands.dataset nirs4all.cli.commands.keyword_registry nirs4all.cli.commands.results nirs4all.cli.commands.robustness_report nirs4all.cli.commands.robustness_summary_schema nirs4all.cli.commands.tuning nirs4all.cli.commands.tuning_space nirs4all.cli.commands.tuning_summary_schema nirs4all.cli.commands.workflow nirs4all.cli.commands.workspace nirs4all.cli.installation_test nirs4all.cli.main nirs4all.config.cache_config nirs4all.config.validator nirs4all.controllers.base nirs4all.controllers.charts.augmentation nirs4all.controllers.charts.exclusion nirs4all.controllers.charts.folds nirs4all.controllers.charts.spectra nirs4all.controllers.charts.spectral_distribution nirs4all.controllers.charts.targets nirs4all.controllers.controller nirs4all.controllers.data.auto_transfer_preproc nirs4all.controllers.data.balancing nirs4all.controllers.data.branch nirs4all.controllers.data.branch_utils nirs4all.controllers.data.concat_transform nirs4all.controllers.data.exclude nirs4all.controllers.data.feature_augmentation nirs4all.controllers.data.feature_selection nirs4all.controllers.data.merge nirs4all.controllers.data.rep_fusion nirs4all.controllers.data.repetition nirs4all.controllers.data.resampler nirs4all.controllers.data.sample_augmentation nirs4all.controllers.data.tag nirs4all.controllers.flow.dummy nirs4all.controllers.models.autogluon_model nirs4all.controllers.models.base_model nirs4all.controllers.models.components.identifier_generator nirs4all.controllers.models.components.index_normalizer nirs4all.controllers.models.components.prediction_assembler nirs4all.controllers.models.components.prediction_transformer nirs4all.controllers.models.components.score_calculator nirs4all.controllers.models.factory nirs4all.controllers.models.jax_model nirs4all.controllers.models.jax_wrapper nirs4all.controllers.models.meta_model nirs4all.controllers.models.pipeline_cv nirs4all.controllers.models.residual_model nirs4all.controllers.models.sklearn_model nirs4all.controllers.models.stacking.branch_validator nirs4all.controllers.models.stacking.classification nirs4all.controllers.models.stacking.config nirs4all.controllers.models.stacking.crossbranch nirs4all.controllers.models.stacking.exceptions nirs4all.controllers.models.stacking.multilevel nirs4all.controllers.models.stacking.reconstructor nirs4all.controllers.models.stacking.serialization nirs4all.controllers.models.tensorflow.config nirs4all.controllers.models.tensorflow.data_prep nirs4all.controllers.models.tensorflow_model nirs4all.controllers.models.torch_model nirs4all.controllers.models.utilities nirs4all.controllers.presets nirs4all.controllers.registry nirs4all.controllers.shared.model_selector nirs4all.controllers.shared.prediction_aggregator nirs4all.controllers.splitters.fold_file_loader nirs4all.controllers.splitters.split nirs4all.controllers.transforms.cluster nirs4all.controllers.transforms.transformer nirs4all.controllers.transforms.y_transformer nirs4all.core.config nirs4all.core.exceptions nirs4all.core.logging.config nirs4all.core.logging.context nirs4all.core.logging.events nirs4all.core.logging.formatters nirs4all.core.logging.handlers nirs4all.core.logging.progress nirs4all.core.metrics nirs4all.core.task_detection nirs4all.core.task_type nirs4all.data.binning nirs4all.data.config nirs4all.data.config_parser nirs4all.data.dataset nirs4all.data.detection.detector nirs4all.data.ensemble_utils nirs4all.data.features nirs4all.data.fit_influence nirs4all.data.indexer nirs4all.data.loaders.archive_loader nirs4all.data.loaders.base nirs4all.data.loaders.csv_loader_new nirs4all.data.loaders.excel_loader nirs4all.data.loaders.loader nirs4all.data.loaders.matlab_loader nirs4all.data.loaders.numpy_loader nirs4all.data.loaders.parquet_loader nirs4all.data.meta_features nirs4all.data.metadata nirs4all.data.multimodal nirs4all.data.parsers.base nirs4all.data.parsers.files_parser nirs4all.data.parsers.folder_parser nirs4all.data.parsers.normalizer nirs4all.data.performance.cache nirs4all.data.predictions nirs4all.data.raw_multisource nirs4all.data.reduction nirs4all.data.relation_replay_manifest nirs4all.data.relations nirs4all.data.repetition_detection nirs4all.data.schema.config nirs4all.data.schema.validation.error_codes nirs4all.data.schema.validation.validators nirs4all.data.selection.sampling nirs4all.data.serialization.serializer nirs4all.data.signal_type nirs4all.data.targets nirs4all.data.types nirs4all.operators.augmentation.edge_artifacts nirs4all.operators.augmentation.environmental nirs4all.operators.augmentation.native nirs4all.operators.augmentation.random nirs4all.operators.augmentation.scattering nirs4all.operators.augmentation.spectral nirs4all.operators.augmentation.splines nirs4all.operators.augmentation.synthesis nirs4all.operators.base.spectra_mixin nirs4all.operators.data.merge nirs4all.operators.data.rep_fusion nirs4all.operators.data.repetition nirs4all.operators.filters.base nirs4all.operators.filters.high_leverage nirs4all.operators.filters.metadata nirs4all.operators.filters.native nirs4all.operators.filters.report nirs4all.operators.filters.spectral_quality nirs4all.operators.filters.x_outlier nirs4all.operators.filters.y_outlier nirs4all.operators.methods.n4m_ops nirs4all.operators.models.base nirs4all.operators.models.jax.generic nirs4all.operators.models.jax.nicon nirs4all.operators.models.meta nirs4all.operators.models.multimodal nirs4all.operators.models.pytorch.mlp nirs4all.operators.models.pytorch.nicon nirs4all.operators.models.pytorch.spectral_transformer nirs4all.operators.models.residual nirs4all.operators.models.selection nirs4all.operators.models.sklearn.aom_fast nirs4all.operators.models.sklearn.aom_pls nirs4all.operators.models.sklearn.aom_pls_aomlib nirs4all.operators.models.sklearn.aom_pls_classifier nirs4all.operators.models.sklearn.aom_ridge nirs4all.operators.models.sklearn.dipls nirs4all.operators.models.sklearn.fckpls nirs4all.operators.models.sklearn.ikpls nirs4all.operators.models.sklearn.ipls nirs4all.operators.models.sklearn.kopls nirs4all.operators.models.sklearn.lwpls nirs4all.operators.models.sklearn.mbpls nirs4all.operators.models.sklearn.nlpls nirs4all.operators.models.sklearn.oklmpls nirs4all.operators.models.sklearn.opls nirs4all.operators.models.sklearn.oplsda nirs4all.operators.models.sklearn.pcr nirs4all.operators.models.sklearn.plsda nirs4all.operators.models.sklearn.pop_pls nirs4all.operators.models.sklearn.pop_pls_classifier nirs4all.operators.models.sklearn.recursive_pls nirs4all.operators.models.sklearn.robust_pls nirs4all.operators.models.sklearn.simpls nirs4all.operators.models.sklearn.sparsepls nirs4all.operators.models.sklearn.tabpfn_nirs nirs4all.operators.models.tensorflow.generic nirs4all.operators.models.tensorflow.legacy.inception_1d_cnn nirs4all.operators.models.tensorflow.legacy.resnet_v2_1d_cnn nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn nirs4all.operators.models.tensorflow.legacy.vgg_1d_cnn nirs4all.operators.models.tensorflow.nicon nirs4all.operators.splitters.grouped_wrapper nirs4all.operators.splitters.splitters nirs4all.operators.transforms.concat nirs4all.operators.transforms.fck_static nirs4all.operators.transforms.feature_selection nirs4all.operators.transforms.features nirs4all.operators.transforms.nirs nirs4all.operators.transforms.norris_williams nirs4all.operators.transforms.orthogonalization nirs4all.operators.transforms.presets nirs4all.operators.transforms.resampler nirs4all.operators.transforms.scalers nirs4all.operators.transforms.sequence nirs4all.operators.transforms.signal nirs4all.operators.transforms.signal_conversion nirs4all.operators.transforms.targets nirs4all.operators.transforms.wavelet_denoise nirs4all.optimization.n4m_engine nirs4all.optimization.optuna nirs4all.optimization.preprocessing nirs4all.pipeline.analysis.model_diagnostics nirs4all.pipeline.analysis.shape_inference nirs4all.pipeline.analysis.splitter_config nirs4all.pipeline.analysis.topology nirs4all.pipeline.bundle.constants nirs4all.pipeline.bundle.generator nirs4all.pipeline.bundle.loader nirs4all.pipeline.config.component_serialization nirs4all.pipeline.config.context nirs4all.pipeline.config.generator nirs4all.pipeline.config.pipeline_config nirs4all.pipeline.config.portable_method_specs nirs4all.pipeline.config.refit_params nirs4all.pipeline.dagml.attested_by_source nirs4all.pipeline.dagml.auto_transfer nirs4all.pipeline.dagml.autogluon_estimator nirs4all.pipeline.dagml.cancellation nirs4all.pipeline.dagml.chart_projection nirs4all.pipeline.dagml.cli_runner nirs4all.pipeline.dagml.conformal_contracts nirs4all.pipeline.dagml.conformal_store nirs4all.pipeline.dagml.core_archive_replay nirs4all.pipeline.dagml.cv_weight_transfer nirs4all.pipeline.dagml.data_provider nirs4all.pipeline.dagml.dataset nirs4all.pipeline.dagml.detect nirs4all.pipeline.dagml.envelope nirs4all.pipeline.dagml.errors nirs4all.pipeline.dagml.estimator nirs4all.pipeline.dagml.exclude nirs4all.pipeline.dagml.experimental_units nirs4all.pipeline.dagml.finetune_lowering nirs4all.pipeline.dagml.fit_identity nirs4all.pipeline.dagml.fixed_cohort_views nirs4all.pipeline.dagml.folds nirs4all.pipeline.dagml.framework_estimator nirs4all.pipeline.dagml.full_train nirs4all.pipeline.dagml.full_train_variants nirs4all.pipeline.dagml.general_archive nirs4all.pipeline.dagml.general_replay nirs4all.pipeline.dagml.general_workspace nirs4all.pipeline.dagml.generated_hpo_subprocess nirs4all.pipeline.dagml.generated_hpo_worker nirs4all.pipeline.dagml.generated_subprocess nirs4all.pipeline.dagml.generated_views nirs4all.pipeline.dagml.generated_worker nirs4all.pipeline.dagml.host_artifacts nirs4all.pipeline.dagml.host_finetune nirs4all.pipeline.dagml.host_hpo_candidate nirs4all.pipeline.dagml.host_hpo_candidate_worker nirs4all.pipeline.dagml.host_search_checkpoint nirs4all.pipeline.dagml.identity nirs4all.pipeline.dagml.in_process_runner nirs4all.pipeline.dagml.initial_refit_replay nirs4all.pipeline.dagml.late_tuning nirs4all.pipeline.dagml.methods_classification nirs4all.pipeline.dagml.methods_lane nirs4all.pipeline.dagml.methods_multimodal nirs4all.pipeline.dagml.methods_replay nirs4all.pipeline.dagml.methods_runtime nirs4all.pipeline.dagml.multimodal_contracts nirs4all.pipeline.dagml.multimodal_tuning nirs4all.pipeline.dagml.na_policy nirs4all.pipeline.dagml.named_stacking nirs4all.pipeline.dagml.named_torch nirs4all.pipeline.dagml.named_torch_estimator nirs4all.pipeline.dagml.native_archive_replay nirs4all.pipeline.dagml.native_client nirs4all.pipeline.dagml.native_conformal_calibration nirs4all.pipeline.dagml.native_pls_fold_hpo nirs4all.pipeline.dagml.native_pls_phase_controls nirs4all.pipeline.dagml.native_pls_phase_replay nirs4all.pipeline.dagml.native_results nirs4all.pipeline.dagml.native_vote nirs4all.pipeline.dagml.node_runner nirs4all.pipeline.dagml.operator_parameters nirs4all.pipeline.dagml.operator_routing nirs4all.pipeline.dagml.pipeline_objective nirs4all.pipeline.dagml.pipeline_objective_compiler nirs4all.pipeline.dagml.process_adapter nirs4all.pipeline.dagml.public_batch nirs4all.pipeline.dagml.public_normalization nirs4all.pipeline.dagml.raw_replay_lowerer nirs4all.pipeline.dagml.raw_training_lowerer nirs4all.pipeline.dagml.residual_run nirs4all.pipeline.dagml.resolver nirs4all.pipeline.dagml.resources nirs4all.pipeline.dagml.result nirs4all.pipeline.dagml.rt nirs4all.pipeline.dagml.run_backend nirs4all.pipeline.dagml.run_paths nirs4all.pipeline.dagml.sequential_models nirs4all.pipeline.dagml.source_missing nirs4all.pipeline.dagml.source_stacking nirs4all.pipeline.dagml.steps nirs4all.pipeline.dagml.structural_classification nirs4all.pipeline.dagml.structural_multimodal nirs4all.pipeline.dagml.structural_sources nirs4all.pipeline.dagml.structural_topology nirs4all.pipeline.dagml.structural_torch nirs4all.pipeline.dagml.structural_tuning nirs4all.pipeline.dagml.target_capture nirs4all.pipeline.dagml.terminal_predict_lowerer nirs4all.pipeline.dagml.torch_estimator nirs4all.pipeline.dagml.torch_topology_replay nirs4all.pipeline.dagml.training_compiler nirs4all.pipeline.dagml.training_contracts nirs4all.pipeline.dagml.training_controls nirs4all.pipeline.dagml.tuning_adapters nirs4all.pipeline.dagml.tuning_contracts nirs4all.pipeline.dagml.tuning_projection nirs4all.pipeline.dagml.typed_parallel nirs4all.pipeline.dagml.worker_environment nirs4all.pipeline.dagml.workspace_projection nirs4all.pipeline.dagml_bridge nirs4all.pipeline.engine nirs4all.pipeline.execution.builder nirs4all.pipeline.execution.executor nirs4all.pipeline.execution.orchestrator nirs4all.pipeline.execution.preprocessing nirs4all.pipeline.execution.refit.config_extractor nirs4all.pipeline.execution.refit.executor nirs4all.pipeline.execution.refit.model_selector nirs4all.pipeline.execution.refit.stacking_refit nirs4all.pipeline.execution.result nirs4all.pipeline.execution.step_cache nirs4all.pipeline.explain_lineage nirs4all.pipeline.explainer nirs4all.pipeline.keyword_registry nirs4all.pipeline.minimal_predictor nirs4all.pipeline.portable_n4m_roles nirs4all.pipeline.portable_n4m_trained nirs4all.pipeline.predictor nirs4all.pipeline.resolver nirs4all.pipeline.retrainer nirs4all.pipeline.run nirs4all.pipeline.runner nirs4all.pipeline.steps.parser nirs4all.pipeline.steps.router nirs4all.pipeline.steps.step_runner nirs4all.pipeline.storage.array_store nirs4all.pipeline.storage.artifacts.artifact_loader nirs4all.pipeline.storage.artifacts.artifact_persistence nirs4all.pipeline.storage.artifacts.artifact_registry nirs4all.pipeline.storage.artifacts.operator_chain nirs4all.pipeline.storage.artifacts.query_service nirs4all.pipeline.storage.artifacts.types nirs4all.pipeline.storage.artifacts.utils nirs4all.pipeline.storage.chain_builder nirs4all.pipeline.storage.chain_replay nirs4all.pipeline.storage.library nirs4all.pipeline.storage.model_catalogue nirs4all.pipeline.storage.prediction_export nirs4all.pipeline.storage.store_protocol nirs4all.pipeline.storage.store_queries nirs4all.pipeline.storage.store_schema nirs4all.pipeline.storage.workspace_read_contract nirs4all.pipeline.storage.workspace_store nirs4all.pipeline.trace.execution_trace nirs4all.pipeline.trace.extractor nirs4all.pipeline.trace.recorder nirs4all.runtime nirs4all.sklearn.classifier nirs4all.sklearn.pipeline nirs4all.synthesis.accelerated nirs4all.synthesis.benchmarks nirs4all.synthesis.builder nirs4all.synthesis.components nirs4all.synthesis.config nirs4all.synthesis.detectors nirs4all.synthesis.domains nirs4all.synthesis.environmental nirs4all.synthesis.exporter nirs4all.synthesis.fitter nirs4all.synthesis.generator nirs4all.synthesis.instruments nirs4all.synthesis.measurement_modes nirs4all.synthesis.metadata nirs4all.synthesis.prior nirs4all.synthesis.procedural nirs4all.synthesis.products nirs4all.synthesis.scattering nirs4all.synthesis.sources nirs4all.synthesis.targets nirs4all.synthesis.validation nirs4all.synthesis.wavenumber nirs4all.utils.backend nirs4all.utils.hashing nirs4all.utils.header_units nirs4all.utils.lazy nirs4all.utils.memory nirs4all.utils.operator_formatting nirs4all.utils.spinner nirs4all.utils.transform_output nirs4all.visualization.analysis.branch nirs4all.visualization.analysis.shap nirs4all.visualization.analysis.transfer nirs4all.visualization.chart_utils.annotator nirs4all.visualization.chart_utils.matrix_builder nirs4all.visualization.chart_utils.normalizer nirs4all.visualization.chart_utils.predictions_adapter nirs4all.visualization.charts.base nirs4all.visualization.charts.candlestick nirs4all.visualization.charts.config nirs4all.visualization.charts.confusion_matrix nirs4all.visualization.charts.heatmap nirs4all.visualization.charts.histogram nirs4all.visualization.charts.top_k_comparison nirs4all.visualization.display nirs4all.visualization.naming nirs4all.visualization.pipeline_diagram nirs4all.visualization.prediction_cache nirs4all.visualization.predictions nirs4all.visualization.reports nirs4all.workspace.compat nirs4all.workspace.upgrade

module_name (nirs4all.pipeline.dagml.native_client.DagMLNativeClient property) moisture (nirs4all.synthesis.environmental.EnvironmentalEffectsConfig attribute) moisture_config (nirs4all.synthesis.fitter.FittedParameters attribute) moisture_content (nirs4all.synthesis.environmental.MoistureConfig attribute) MoistureAugmenter (class in nirs4all.operators.augmentation.environmental) MoistureConfig (class in nirs4all.synthesis.environmental) MonochromatorType (class in nirs4all.synthesis.instruments) msc() (in module nirs4all.operators.transforms.nirs) msc_correctable (nirs4all.synthesis.fitter.ScatteringInference attribute) MSC_CORRECTED (nirs4all.synthesis.fitter.PreprocessingType attribute) MSCBase (class in nirs4all.operators.models.sklearn.aom_fast) MSE (nirs4all.operators.data.merge.DisjointSelectionCriterion attribute) mult_scatter_std (nirs4all.synthesis.fitter.OperatorVarianceParams attribute) multi_source() (in module nirs4all.api.generate) multi_target (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationSpec attribute) MULTICLASS_CLASSIFICATION (nirs4all.controllers.models.stacking.classification.StackingTaskType attribute) (nirs4all.data.schema.config.TaskType attribute) MultiLevelProgress (class in nirs4all.core.logging.progress) MultiLevelStackingError MultimodalClassifier (class in nirs4all.operators.models.multimodal) MultimodalRegressor (class in nirs4all.operators.models.multimodal) MultimodalSpectroDataset (class in nirs4all.data.multimodal) MultimodalTuningStopped multiplicative_scatter_std (nirs4all.synthesis.fitter.ScatteringInference attribute) MultiplicativeNoise (class in nirs4all.operators.augmentation.spectral) multiscale_derivative_fit() (in module nirs4all.synthesis.fitter) multiscale_fit() (in module nirs4all.synthesis.fitter) MultiSourceGenerator (class in nirs4all.synthesis.sources) MultiSourceResult (class in nirs4all.synthesis.sources)

N

N4A (nirs4all.pipeline.bundle.generator.BundleFormat attribute) N4A_PY (nirs4all.pipeline.bundle.generator.BundleFormat attribute) N4MFinetuneManager (class in nirs4all.optimization.n4m_engine) N4MPipelineObjectiveAdapter (class in nirs4all.pipeline.dagml.tuning_adapters) n_augmented_excluded (nirs4all.operators.filters.report.FilteringReport attribute) n_bands (nirs4all.synthesis.fitter.RealBandFitResult attribute) n_batches (nirs4all.synthesis.builder.BuilderState attribute) n_branches (nirs4all.core.logging.context.StackContext attribute) n_chains (nirs4all.api.inspector_views.BiasVarianceEntry attribute) n_classes (nirs4all.controllers.models.stacking.classification.ClassificationInfo attribute) (nirs4all.controllers.models.stacking.classification.StackingTaskType property) (nirs4all.synthesis.builder.BuilderState attribute) n_classes_range (nirs4all.synthesis.prior.NIRSPriorConfig attribute) n_columns (nirs4all.controllers.data.merge.DisjointMergeMetadata attribute) (nirs4all.controllers.data.merge.DisjointMergeResult attribute) (nirs4all.data.detection.detector.DetectionResult attribute) (nirs4all.operators.data.merge.MergeConfig attribute) n_components (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) (nirs4all.synthesis.fitter.OptimizedFitResult attribute) (nirs4all.synthesis.fitter.PCAVarianceParams attribute) n_components_range (nirs4all.synthesis.domains.DomainConfig attribute) n_confounders (nirs4all.synthesis.builder.BuilderState attribute) n_covered (nirs4all.pipeline.dagml.conformal_contracts.ConformalMetricSet attribute) n_excluded (nirs4all.operators.filters.report.FilterResult attribute) n_features (nirs4all.pipeline.dagml.terminal_predict_lowerer.StrictMethodsTerminalPredictionExecution attribute) (nirs4all.pipeline.run.DatasetInfo attribute) (nirs4all.synthesis.sources.SourceConfig attribute) n_features_in_ (nirs4all.operators.transforms.sequence.SequenceSummary attribute) n_features_out_ (nirs4all.operators.transforms.sequence.SequenceSummary attribute) n_features_per_model (nirs4all.controllers.models.stacking.classification.MetaFeatureInfo attribute) n_features_total (nirs4all.synthesis.sources.MultiSourceResult property) n_final_excluded (nirs4all.operators.filters.report.FilteringReport attribute) n_final_kept (nirs4all.operators.filters.report.FilteringReport attribute) n_folds (nirs4all.api.inspector_views.BiasVarianceEntry attribute) n_fundamental_bands (nirs4all.synthesis.procedural.ProceduralComponentConfig attribute) n_groups (nirs4all.synthesis.builder.BuilderState attribute) n_kept (nirs4all.operators.filters.report.FilterResult attribute) n_missed_above (nirs4all.pipeline.dagml.conformal_contracts.ConformalMetricSet attribute) n_missed_below (nirs4all.pipeline.dagml.conformal_contracts.ConformalMetricSet attribute) n_models_original (nirs4all.controllers.data.merge.DisjointBranchInfo attribute) n_models_selected (nirs4all.controllers.data.merge.DisjointBranchInfo attribute) n_observations (nirs4all.data.raw_multisource.RawMultiSourceDataset property) n_peaks_mean (nirs4all.synthesis.fitter.SpectralProperties attribute) n_priority_components (nirs4all.synthesis.fitter.OptimizedFitResult attribute) n_real_samples (nirs4all.synthesis.validation.DatasetComparisonResult attribute) n_reflections (nirs4all.synthesis.measurement_modes.ATRConfig attribute) n_regimes (nirs4all.synthesis.builder.BuilderState attribute) n_repeated (nirs4all.data.repetition_detection.RepetitionGroups attribute) n_repetitions (nirs4all.synthesis.builder.BuilderState attribute) n_rows (nirs4all.data.detection.detector.DetectionResult attribute) n_samples (nirs4all.api.inspector_views.BiasVarianceEntry attribute) (nirs4all.api.robustness.RobustnessMetricSet attribute) (nirs4all.controllers.data.merge.DisjointBranchInfo attribute) (nirs4all.controllers.models.pipeline_cv.PrecomputedFoldSplitter attribute) (nirs4all.controllers.models.stacking.branch_validator.BranchInfo attribute) (nirs4all.data.raw_multisource.RawMultiSourceDataset property) (nirs4all.operators.filters.report.FilterResult attribute) (nirs4all.pipeline.analysis.model_diagnostics.BiasVarianceDecomposition attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationCohortManifest property) (nirs4all.pipeline.dagml.conformal_contracts.ConformalMetricSet attribute) (nirs4all.pipeline.dagml.estimator.DagMLFitIdentityFrame attribute) (nirs4all.pipeline.dagml.estimator.DagMLPredictIdentityFrame attribute) (nirs4all.pipeline.dagml.fit_identity.DagMLCalibrationIdentityFrame attribute) (nirs4all.pipeline.run.DatasetInfo attribute) (nirs4all.synthesis.benchmarks.BenchmarkDatasetInfo attribute) (nirs4all.synthesis.builder.BuilderState attribute) (nirs4all.synthesis.fitter.SpectralProperties attribute) (nirs4all.synthesis.fitter.VarianceFitResult attribute) (nirs4all.synthesis.sources.MultiSourceResult property) n_samples_range (nirs4all.synthesis.prior.NIRSPriorConfig attribute) n_sources (nirs4all.data.multimodal.MultimodalSpectroDataset property) n_splits (nirs4all.pipeline.analysis.splitter_config.SplitterConfig attribute) n_synthetic_samples (nirs4all.synthesis.validation.DatasetComparisonResult attribute) n_targets_range (nirs4all.synthesis.prior.NIRSPriorConfig attribute) n_total_samples (nirs4all.operators.filters.report.FilteringReport attribute) n_trials (nirs4all.api.tuning.NativeTuning attribute) n_wavelengths (nirs4all.synthesis.benchmarks.BenchmarkDatasetInfo attribute) (nirs4all.synthesis.fitter.SpectralProperties attribute) name (nirs4all.analysis.results.TransferResult attribute) (nirs4all.controllers.models.components.identifier_generator.ModelIdentifiers attribute) (nirs4all.core.logging.context.BranchContext attribute) (nirs4all.core.logging.context.SourceContext attribute) (nirs4all.data.loaders.archive_loader.EnhancedZipLoader attribute) (nirs4all.data.loaders.archive_loader.TarLoader attribute) (nirs4all.data.loaders.csv_loader_new.CSVLoader attribute) (nirs4all.data.loaders.excel_loader.ExcelLoader attribute) (nirs4all.data.loaders.matlab_loader.MatlabLoader attribute) (nirs4all.data.loaders.numpy_loader.NumpyLoader attribute) (nirs4all.data.loaders.parquet_loader.ParquetLoader attribute) (nirs4all.data.meta_features.PredictionFeatureVector attribute) (nirs4all.data.raw_multisource.RawMultiSourceDataset property) (nirs4all.operators.augmentation.edge_artifacts.DetectorModel attribute) (nirs4all.operators.models.sklearn.aom_fast.AbsorbanceBase attribute) (nirs4all.operators.models.sklearn.aom_fast.ASLSBase property) (nirs4all.operators.models.sklearn.aom_fast.BaseTransform attribute) (nirs4all.operators.models.sklearn.aom_fast.EMSCBase attribute) (nirs4all.operators.models.sklearn.aom_fast.MSCBase attribute) (nirs4all.operators.models.sklearn.aom_fast.OSCBase property) (nirs4all.operators.models.sklearn.aom_fast.RawBase attribute) (nirs4all.operators.models.sklearn.aom_fast.SNVBase attribute) (nirs4all.operators.models.sklearn.aom_fast.SNVOSCBase property) (nirs4all.operators.models.sklearn.aom_fast.WhittakerBaseLine property) (nirs4all.operators.models.sklearn.aom_pls.LinearSpectralOperator attribute) (nirs4all.pipeline.execution.result.ArtifactMeta attribute) (nirs4all.pipeline.run.DatasetInfo attribute) (nirs4all.pipeline.run.Run attribute) (nirs4all.pipeline.run.TemplateInfo attribute) (nirs4all.synthesis.benchmarks.BenchmarkDatasetInfo attribute) (nirs4all.synthesis.builder.BuilderState attribute) (nirs4all.synthesis.components.NIRBand attribute) (nirs4all.synthesis.components.SpectralComponent attribute) (nirs4all.synthesis.domains.DomainConfig attribute) (nirs4all.synthesis.fitter.SpectralProperties attribute) (nirs4all.synthesis.products.ProductTemplate attribute) (nirs4all.synthesis.sources.SourceConfig attribute) named_archive_artifact() (in module nirs4all.pipeline.dagml.multimodal_contracts) named_learned_state_sha256() (in module nirs4all.pipeline.dagml.named_torch) named_outputs (nirs4all.pipeline.bundle.loader.BundleLoader property) named_task_seed() (in module nirs4all.pipeline.dagml.named_torch) named_torch_estimator() (in module nirs4all.pipeline.dagml.named_torch) named_torch_task_scope() (in module nirs4all.pipeline.dagml.named_torch) NamedStackingResult (class in nirs4all.pipeline.dagml.named_stacking) names() (nirs4all.operators.models.sklearn.aom_fast.OperatorChain method) NAPolicy (class in nirs4all.data.schema.config) native_archive_reference (nirs4all.api.native_archive_training.NativeMethodsArchiveRunResult property) (nirs4all.api.native_result.NativeMethodsRunResult property) native_capability_matrix_schema() (in module nirs4all.api.native_capabilities) native_client() (in module nirs4all.pipeline.dagml.native_client) native_conformal_calibration (nirs4all.api.native_result.NativeMethodsRunResult property) native_estimator (nirs4all.api.native_result.NativeMethodsRunResult property) native_execution_claim (nirs4all.api.native_result.NativeMethodsRunResult property) native_execution_is_live (nirs4all.api.native_archive_training.NativeMethodsArchiveRunResult property) (nirs4all.api.native_result.NativeMethodsRunResult property) native_fit_weights() (in module nirs4all.pipeline.dagml.experimental_units) native_methods_hpo_resume_state (nirs4all.api.native_result.NativeMethodsRunResult property) native_methods_refusal() (in module nirs4all.pipeline.dagml.methods_lane) native_params() (in module nirs4all.pipeline.dagml.methods_lane) native_results_enabled() (in module nirs4all.pipeline.dagml.native_results) native_retrain_lineage (nirs4all.api.native_result.NativeMethodsRunResult property) native_runtime_client() (nirs4all.pipeline.dagml.estimator.DagMLPipelineEstimator method) native_selected_variant_id (nirs4all.api.native_result.NativeMethodsRunResult property) NativeArchiveConformalInterval (class in nirs4all.pipeline.dagml.native_archive_replay) NativeArchivePrediction (class in nirs4all.pipeline.dagml.native_archive_replay) NativeArchiveReplayError NativeArchiveTrainingError NativeConformalCalibrationError NativeConformalCalibrationReplay (class in nirs4all.pipeline.dagml.native_conformal_calibration) NativeMethodsArchiveRunResult (class in nirs4all.api.native_archive_training) NativeMethodsExecutionClaim (class in nirs4all.api.native_witness) NativeMethodsHpoCapabilityError NativeMethodsRefitResult (class in nirs4all.api.native_refit_result) NativeMethodsRunResult (class in nirs4all.api.native_result) NativeMethodsSession (class in nirs4all.api.native_session) NativeMethodsTerminalExecutionClaim (class in nirs4all.api.native_witness) NativePlsFoldPlan (class in nirs4all.pipeline.dagml.native_pls_fold_hpo) NativePlsPhaseControls (class in nirs4all.pipeline.dagml.native_pls_phase_controls) NativeRetrainLineage (class in nirs4all.api.native_retrain_lineage) NativeRoleFilter (class in nirs4all.operators.filters.native) NativeTuning (class in nirs4all.api.tuning) needs_dynamic_feature_axis() (in module nirs4all.pipeline.dagml.cli_runner) NESTED (nirs4all.operators.data.merge.StackingSelectionProtocol attribute) nesting_depth (nirs4all.controllers.models.stacking.branch_validator.BranchInfo attribute) new_model (nirs4all.pipeline.retrainer.RetrainConfig attribute) NH_COMBINATION (nirs4all.synthesis.environmental.SpectralRegion attribute) NH_FIRST_OVERTONE (nirs4all.synthesis.environmental.SpectralRegion attribute) nicon() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) nicon_classification() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) nicon_set() (in module nirs4all.operators.transforms.presets) nicon_VG() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) nicon_VG_classification() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) NIRBand (class in nirs4all.synthesis.components) nirs4all.analysis.playground_dataset module nirs4all.analysis.playground_distances module nirs4all.analysis.playground_execution module nirs4all.analysis.playground_facade module nirs4all.analysis.playground_metrics module nirs4all.analysis.playground_partition module nirs4all.analysis.playground_prepare module nirs4all.analysis.playground_projections module nirs4all.analysis.playground_statistics module nirs4all.analysis.playground_steps module nirs4all.analysis.playground_types module nirs4all.analysis.presets module nirs4all.analysis.projections module nirs4all.analysis.results module nirs4all.analysis.selector module nirs4all.analysis.transfer_metrics module nirs4all.analysis.transfer_utils module nirs4all.api.advanced_capabilities module nirs4all.api.calibrate module nirs4all.api.dagml_training module nirs4all.api.dataset_documents module nirs4all.api.dataset_inspection module nirs4all.api.explain module nirs4all.api.general_explain module nirs4all.api.general_retrain module nirs4all.api.general_synthesis module nirs4all.api.general_transfer module nirs4all.api.generate module nirs4all.api.inspector_json module nirs4all.api.inspector_normalization module nirs4all.api.inspector_views module nirs4all.api.library_playground module nirs4all.api.native_archive_training module nirs4all.api.native_capabilities module nirs4all.api.native_refit_result module nirs4all.api.native_result module nirs4all.api.native_retrain_lineage module nirs4all.api.native_session module nirs4all.api.native_training module nirs4all.api.native_witness module nirs4all.api.portable_archive module nirs4all.api.predict module nirs4all.api.public_results module nirs4all.api.public_tuning module nirs4all.api.result module nirs4all.api.retrain module nirs4all.api.retrain_capabilities module nirs4all.api.robustness module nirs4all.api.run module nirs4all.api.run_selection module nirs4all.api.session module nirs4all.api.studio_lineage module nirs4all.api.studio_scientific module nirs4all.api.studio_scientific_general module nirs4all.api.tuning module nirs4all.api.workspace_chain_snapshot module nirs4all.cli.commands.artifacts module nirs4all.cli.commands.config module nirs4all.cli.commands.dataset module nirs4all.cli.commands.keyword_registry module nirs4all.cli.commands.results module nirs4all.cli.commands.robustness_report module nirs4all.cli.commands.robustness_summary_schema module nirs4all.cli.commands.tuning module nirs4all.cli.commands.tuning_space module nirs4all.cli.commands.tuning_summary_schema module nirs4all.cli.commands.workflow module nirs4all.cli.commands.workspace module nirs4all.cli.installation_test module nirs4all.cli.main module nirs4all.config.cache_config module nirs4all.config.validator module nirs4all.controllers.base module nirs4all.controllers.charts.augmentation module nirs4all.controllers.charts.exclusion module nirs4all.controllers.charts.folds module nirs4all.controllers.charts.spectra module nirs4all.controllers.charts.spectral_distribution module nirs4all.controllers.charts.targets module nirs4all.controllers.controller module nirs4all.controllers.data.auto_transfer_preproc module nirs4all.controllers.data.balancing module nirs4all.controllers.data.branch module nirs4all.controllers.data.branch_utils module nirs4all.controllers.data.concat_transform module nirs4all.controllers.data.exclude module nirs4all.controllers.data.feature_augmentation module nirs4all.controllers.data.feature_selection module nirs4all.controllers.data.merge module nirs4all.controllers.data.rep_fusion module nirs4all.controllers.data.repetition module nirs4all.controllers.data.resampler module nirs4all.controllers.data.sample_augmentation module nirs4all.controllers.data.tag module nirs4all.controllers.flow.dummy module nirs4all.controllers.models.autogluon_model module nirs4all.controllers.models.base_model module nirs4all.controllers.models.components.identifier_generator module nirs4all.controllers.models.components.index_normalizer module nirs4all.controllers.models.components.prediction_assembler module nirs4all.controllers.models.components.prediction_transformer module nirs4all.controllers.models.components.score_calculator module nirs4all.controllers.models.factory module nirs4all.controllers.models.jax_model module nirs4all.controllers.models.jax_wrapper module nirs4all.controllers.models.meta_model module nirs4all.controllers.models.pipeline_cv module nirs4all.controllers.models.residual_model module nirs4all.controllers.models.sklearn_model module nirs4all.controllers.models.stacking.branch_validator module nirs4all.controllers.models.stacking.classification module nirs4all.controllers.models.stacking.config module nirs4all.controllers.models.stacking.crossbranch module nirs4all.controllers.models.stacking.exceptions module nirs4all.controllers.models.stacking.multilevel module nirs4all.controllers.models.stacking.reconstructor module nirs4all.controllers.models.stacking.serialization module nirs4all.controllers.models.tensorflow.config module nirs4all.controllers.models.tensorflow.data_prep module nirs4all.controllers.models.tensorflow_model module nirs4all.controllers.models.torch_model module nirs4all.controllers.models.utilities module nirs4all.controllers.presets module nirs4all.controllers.registry module nirs4all.controllers.shared.model_selector module nirs4all.controllers.shared.prediction_aggregator module nirs4all.controllers.splitters.fold_file_loader module nirs4all.controllers.splitters.split module nirs4all.controllers.transforms.cluster module nirs4all.controllers.transforms.transformer module nirs4all.controllers.transforms.y_transformer module nirs4all.core.config module nirs4all.core.exceptions module nirs4all.core.logging.config module nirs4all.core.logging.context module nirs4all.core.logging.events module nirs4all.core.logging.formatters module nirs4all.core.logging.handlers module nirs4all.core.logging.progress module nirs4all.core.metrics module nirs4all.core.task_detection module nirs4all.core.task_type module nirs4all.data.binning module nirs4all.data.config module nirs4all.data.config_parser module nirs4all.data.dataset module nirs4all.data.detection.detector module nirs4all.data.ensemble_utils module nirs4all.data.features module nirs4all.data.fit_influence module nirs4all.data.indexer module nirs4all.data.loaders.archive_loader module nirs4all.data.loaders.base module nirs4all.data.loaders.csv_loader_new module nirs4all.data.loaders.excel_loader module nirs4all.data.loaders.loader module nirs4all.data.loaders.matlab_loader module nirs4all.data.loaders.numpy_loader module nirs4all.data.loaders.parquet_loader module nirs4all.data.meta_features module nirs4all.data.metadata module nirs4all.data.multimodal module nirs4all.data.parsers.base module nirs4all.data.parsers.files_parser module nirs4all.data.parsers.folder_parser module nirs4all.data.parsers.normalizer module nirs4all.data.performance.cache module nirs4all.data.predictions module nirs4all.data.raw_multisource module nirs4all.data.reduction module nirs4all.data.relation_replay_manifest module nirs4all.data.relations module nirs4all.data.repetition_detection module nirs4all.data.schema.config module nirs4all.data.schema.validation.error_codes module nirs4all.data.schema.validation.validators module nirs4all.data.selection.sampling module nirs4all.data.serialization.serializer module nirs4all.data.signal_type module nirs4all.data.targets module nirs4all.data.types module nirs4all.operators.augmentation.edge_artifacts module nirs4all.operators.augmentation.environmental module nirs4all.operators.augmentation.native module nirs4all.operators.augmentation.random module nirs4all.operators.augmentation.scattering module nirs4all.operators.augmentation.spectral module nirs4all.operators.augmentation.splines module nirs4all.operators.augmentation.synthesis module nirs4all.operators.base.spectra_mixin module nirs4all.operators.data.merge module nirs4all.operators.data.rep_fusion module nirs4all.operators.data.repetition module nirs4all.operators.filters.base module nirs4all.operators.filters.high_leverage module nirs4all.operators.filters.metadata module nirs4all.operators.filters.native module nirs4all.operators.filters.report module nirs4all.operators.filters.spectral_quality module nirs4all.operators.filters.x_outlier module nirs4all.operators.filters.y_outlier module nirs4all.operators.methods.n4m_ops module nirs4all.operators.models.base module nirs4all.operators.models.jax.generic module nirs4all.operators.models.jax.nicon module nirs4all.operators.models.meta module nirs4all.operators.models.multimodal module nirs4all.operators.models.pytorch.mlp module nirs4all.operators.models.pytorch.nicon module nirs4all.operators.models.pytorch.spectral_transformer module nirs4all.operators.models.residual module nirs4all.operators.models.selection module nirs4all.operators.models.sklearn.aom_fast module

nirs4all.operators.models.sklearn.aom_pls module nirs4all.operators.models.sklearn.aom_pls_aomlib module nirs4all.operators.models.sklearn.aom_pls_classifier module nirs4all.operators.models.sklearn.aom_ridge module nirs4all.operators.models.sklearn.dipls module nirs4all.operators.models.sklearn.fckpls module nirs4all.operators.models.sklearn.ikpls module nirs4all.operators.models.sklearn.ipls module nirs4all.operators.models.sklearn.kopls module nirs4all.operators.models.sklearn.lwpls module nirs4all.operators.models.sklearn.mbpls module nirs4all.operators.models.sklearn.nlpls module nirs4all.operators.models.sklearn.oklmpls module nirs4all.operators.models.sklearn.opls module nirs4all.operators.models.sklearn.oplsda module nirs4all.operators.models.sklearn.pcr module nirs4all.operators.models.sklearn.plsda module nirs4all.operators.models.sklearn.pop_pls module nirs4all.operators.models.sklearn.pop_pls_classifier module nirs4all.operators.models.sklearn.recursive_pls module nirs4all.operators.models.sklearn.robust_pls module nirs4all.operators.models.sklearn.simpls module nirs4all.operators.models.sklearn.sparsepls module nirs4all.operators.models.sklearn.tabpfn_nirs module nirs4all.operators.models.tensorflow.generic module nirs4all.operators.models.tensorflow.legacy.inception_1d_cnn module nirs4all.operators.models.tensorflow.legacy.resnet_v2_1d_cnn module nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn module nirs4all.operators.models.tensorflow.legacy.vgg_1d_cnn module nirs4all.operators.models.tensorflow.nicon module nirs4all.operators.splitters.grouped_wrapper module nirs4all.operators.splitters.splitters module nirs4all.operators.transforms.concat module nirs4all.operators.transforms.fck_static module nirs4all.operators.transforms.feature_selection module nirs4all.operators.transforms.features module nirs4all.operators.transforms.nirs module nirs4all.operators.transforms.norris_williams module nirs4all.operators.transforms.orthogonalization module nirs4all.operators.transforms.presets module nirs4all.operators.transforms.resampler module nirs4all.operators.transforms.scalers module nirs4all.operators.transforms.sequence module nirs4all.operators.transforms.signal module nirs4all.operators.transforms.signal_conversion module nirs4all.operators.transforms.targets module nirs4all.operators.transforms.wavelet_denoise module nirs4all.optimization.n4m_engine module nirs4all.optimization.optuna module nirs4all.optimization.preprocessing module nirs4all.pipeline.analysis.model_diagnostics module nirs4all.pipeline.analysis.shape_inference module nirs4all.pipeline.analysis.splitter_config module nirs4all.pipeline.analysis.topology module nirs4all.pipeline.bundle.constants module nirs4all.pipeline.bundle.generator module nirs4all.pipeline.bundle.loader module nirs4all.pipeline.config.component_serialization module nirs4all.pipeline.config.context module nirs4all.pipeline.config.generator module nirs4all.pipeline.config.pipeline_config module nirs4all.pipeline.config.portable_method_specs module nirs4all.pipeline.config.refit_params module nirs4all.pipeline.dagml.attested_by_source module nirs4all.pipeline.dagml.auto_transfer module nirs4all.pipeline.dagml.autogluon_estimator module nirs4all.pipeline.dagml.cancellation module nirs4all.pipeline.dagml.chart_projection module nirs4all.pipeline.dagml.cli_runner module nirs4all.pipeline.dagml.conformal_contracts module nirs4all.pipeline.dagml.conformal_store module nirs4all.pipeline.dagml.core_archive_replay module nirs4all.pipeline.dagml.cv_weight_transfer module nirs4all.pipeline.dagml.data_provider module nirs4all.pipeline.dagml.dataset module nirs4all.pipeline.dagml.detect module nirs4all.pipeline.dagml.envelope module nirs4all.pipeline.dagml.errors module nirs4all.pipeline.dagml.estimator module nirs4all.pipeline.dagml.exclude module nirs4all.pipeline.dagml.experimental_units module nirs4all.pipeline.dagml.finetune_lowering module nirs4all.pipeline.dagml.fit_identity module nirs4all.pipeline.dagml.fixed_cohort_views module nirs4all.pipeline.dagml.folds module nirs4all.pipeline.dagml.framework_estimator module nirs4all.pipeline.dagml.full_train module nirs4all.pipeline.dagml.full_train_variants module nirs4all.pipeline.dagml.general_archive module nirs4all.pipeline.dagml.general_replay module nirs4all.pipeline.dagml.general_workspace module nirs4all.pipeline.dagml.generated_hpo_subprocess module nirs4all.pipeline.dagml.generated_hpo_worker module nirs4all.pipeline.dagml.generated_subprocess module nirs4all.pipeline.dagml.generated_views module nirs4all.pipeline.dagml.generated_worker module nirs4all.pipeline.dagml.host_artifacts module nirs4all.pipeline.dagml.host_finetune module nirs4all.pipeline.dagml.host_hpo_candidate module nirs4all.pipeline.dagml.host_hpo_candidate_worker module nirs4all.pipeline.dagml.host_search_checkpoint module nirs4all.pipeline.dagml.identity module nirs4all.pipeline.dagml.in_process_runner module nirs4all.pipeline.dagml.initial_refit_replay module nirs4all.pipeline.dagml.late_tuning module nirs4all.pipeline.dagml.methods_classification module nirs4all.pipeline.dagml.methods_lane module nirs4all.pipeline.dagml.methods_multimodal module nirs4all.pipeline.dagml.methods_replay module nirs4all.pipeline.dagml.methods_runtime module nirs4all.pipeline.dagml.multimodal_contracts module nirs4all.pipeline.dagml.multimodal_tuning module nirs4all.pipeline.dagml.na_policy module nirs4all.pipeline.dagml.named_stacking module nirs4all.pipeline.dagml.named_torch module nirs4all.pipeline.dagml.named_torch_estimator module nirs4all.pipeline.dagml.native_archive_replay module nirs4all.pipeline.dagml.native_client module nirs4all.pipeline.dagml.native_conformal_calibration module nirs4all.pipeline.dagml.native_pls_fold_hpo module nirs4all.pipeline.dagml.native_pls_phase_controls module nirs4all.pipeline.dagml.native_pls_phase_replay module nirs4all.pipeline.dagml.native_results module nirs4all.pipeline.dagml.native_vote module nirs4all.pipeline.dagml.node_runner module nirs4all.pipeline.dagml.operator_parameters module nirs4all.pipeline.dagml.operator_routing module nirs4all.pipeline.dagml.pipeline_objective module nirs4all.pipeline.dagml.pipeline_objective_compiler module nirs4all.pipeline.dagml.process_adapter module nirs4all.pipeline.dagml.public_batch module nirs4all.pipeline.dagml.public_normalization module nirs4all.pipeline.dagml.raw_replay_lowerer module nirs4all.pipeline.dagml.raw_training_lowerer module nirs4all.pipeline.dagml.residual_run module nirs4all.pipeline.dagml.resolver module nirs4all.pipeline.dagml.resources module nirs4all.pipeline.dagml.result module nirs4all.pipeline.dagml.rt module nirs4all.pipeline.dagml.run_backend module nirs4all.pipeline.dagml.run_paths module nirs4all.pipeline.dagml.sequential_models module nirs4all.pipeline.dagml.source_missing module nirs4all.pipeline.dagml.source_stacking module nirs4all.pipeline.dagml.steps module nirs4all.pipeline.dagml.structural_classification module nirs4all.pipeline.dagml.structural_multimodal module nirs4all.pipeline.dagml.structural_sources module nirs4all.pipeline.dagml.structural_topology module nirs4all.pipeline.dagml.structural_torch module nirs4all.pipeline.dagml.structural_tuning module nirs4all.pipeline.dagml.target_capture module nirs4all.pipeline.dagml.terminal_predict_lowerer module nirs4all.pipeline.dagml.torch_estimator module nirs4all.pipeline.dagml.torch_topology_replay module nirs4all.pipeline.dagml.training_compiler module nirs4all.pipeline.dagml.training_contracts module nirs4all.pipeline.dagml.training_controls module nirs4all.pipeline.dagml.tuning_adapters module nirs4all.pipeline.dagml.tuning_contracts module nirs4all.pipeline.dagml.tuning_projection module nirs4all.pipeline.dagml.typed_parallel module nirs4all.pipeline.dagml.worker_environment module nirs4all.pipeline.dagml.workspace_projection module nirs4all.pipeline.dagml_bridge module nirs4all.pipeline.engine module nirs4all.pipeline.execution.builder module nirs4all.pipeline.execution.executor module nirs4all.pipeline.execution.orchestrator module nirs4all.pipeline.execution.preprocessing module nirs4all.pipeline.execution.refit.config_extractor module nirs4all.pipeline.execution.refit.executor module nirs4all.pipeline.execution.refit.model_selector module nirs4all.pipeline.execution.refit.stacking_refit module nirs4all.pipeline.execution.result module nirs4all.pipeline.execution.step_cache module nirs4all.pipeline.explain_lineage module nirs4all.pipeline.explainer module nirs4all.pipeline.keyword_registry module nirs4all.pipeline.minimal_predictor module nirs4all.pipeline.portable_n4m_roles module nirs4all.pipeline.portable_n4m_trained module nirs4all.pipeline.predictor module nirs4all.pipeline.resolver module nirs4all.pipeline.retrainer module nirs4all.pipeline.run module nirs4all.pipeline.runner module nirs4all.pipeline.steps.parser module nirs4all.pipeline.steps.router module nirs4all.pipeline.steps.step_runner module nirs4all.pipeline.storage.array_store module nirs4all.pipeline.storage.artifacts.artifact_loader module nirs4all.pipeline.storage.artifacts.artifact_persistence module nirs4all.pipeline.storage.artifacts.artifact_registry module nirs4all.pipeline.storage.artifacts.operator_chain module nirs4all.pipeline.storage.artifacts.query_service module nirs4all.pipeline.storage.artifacts.types module nirs4all.pipeline.storage.artifacts.utils module nirs4all.pipeline.storage.chain_builder module nirs4all.pipeline.storage.chain_replay module nirs4all.pipeline.storage.library module nirs4all.pipeline.storage.model_catalogue module nirs4all.pipeline.storage.prediction_export module nirs4all.pipeline.storage.store_protocol module nirs4all.pipeline.storage.store_queries module nirs4all.pipeline.storage.store_schema module nirs4all.pipeline.storage.workspace_read_contract module nirs4all.pipeline.storage.workspace_store module nirs4all.pipeline.trace.execution_trace module nirs4all.pipeline.trace.extractor module nirs4all.pipeline.trace.recorder module nirs4all.runtime module nirs4all.sklearn.classifier module nirs4all.sklearn.pipeline module nirs4all.synthesis.accelerated module nirs4all.synthesis.benchmarks module nirs4all.synthesis.builder module nirs4all.synthesis.components module nirs4all.synthesis.config module nirs4all.synthesis.detectors module nirs4all.synthesis.domains module nirs4all.synthesis.environmental module nirs4all.synthesis.exporter module nirs4all.synthesis.fitter module nirs4all.synthesis.generator module nirs4all.synthesis.instruments module nirs4all.synthesis.measurement_modes module nirs4all.synthesis.metadata module nirs4all.synthesis.prior module nirs4all.synthesis.procedural module nirs4all.synthesis.products module nirs4all.synthesis.scattering module nirs4all.synthesis.sources module nirs4all.synthesis.targets module nirs4all.synthesis.validation module nirs4all.synthesis.wavenumber module nirs4all.utils.backend module nirs4all.utils.hashing module nirs4all.utils.header_units module nirs4all.utils.lazy module nirs4all.utils.memory module nirs4all.utils.operator_formatting module nirs4all.utils.spinner module nirs4all.utils.transform_output module nirs4all.visualization.analysis.branch module nirs4all.visualization.analysis.shap module nirs4all.visualization.analysis.transfer module nirs4all.visualization.chart_utils.annotator module nirs4all.visualization.chart_utils.matrix_builder module nirs4all.visualization.chart_utils.normalizer module nirs4all.visualization.chart_utils.predictions_adapter module nirs4all.visualization.charts.base module nirs4all.visualization.charts.candlestick module nirs4all.visualization.charts.config module nirs4all.visualization.charts.confusion_matrix module nirs4all.visualization.charts.heatmap module nirs4all.visualization.charts.histogram module nirs4all.visualization.charts.top_k_comparison module nirs4all.visualization.display module nirs4all.visualization.naming module nirs4all.visualization.pipeline_diagram module nirs4all.visualization.prediction_cache module nirs4all.visualization.predictions module nirs4all.visualization.reports module nirs4all.workspace.compat module nirs4all.workspace.upgrade module nirs4all_version (nirs4all.pipeline.bundle.loader.BundleMetadata attribute) (nirs4all.pipeline.execution.result.ArtifactMeta attribute) Nirs4AllCalibrationNotImplementedError Nirs4allLogger (class in nirs4all.core.logging.config) NIRSPipelineClassifier (class in nirs4all.sklearn.classifier) NIRSPriorConfig (class in nirs4all.synthesis.prior) node_count (nirs4all.pipeline.config.generator.ValidationResult attribute) node_id (nirs4all.pipeline.dagml.cv_weight_transfer.TransferIdentity attribute) NODE_STYLES (nirs4all.visualization.pipeline_diagram.PipelineDiagram attribute) node_type (nirs4all.visualization.pipeline_diagram.PipelineNode attribute) nodes (nirs4all.api.inspector_views.BranchTopologyResponse attribute) noise (nirs4all.synthesis.targets.ClassSeparationConfig attribute) noise_base (nirs4all.synthesis.fitter.FittedParameters attribute) noise_correlation_length (nirs4all.synthesis.fitter.SpectralProperties attribute) noise_estimate (nirs4all.synthesis.fitter.SpectralProperties attribute) noise_heteroscedasticity (nirs4all.synthesis.builder.BuilderState attribute) noise_level (nirs4all.synthesis.domains.DomainConfig attribute) noise_level_range (nirs4all.synthesis.prior.NIRSPriorConfig attribute) noise_model (nirs4all.synthesis.detectors.DetectorConfig attribute) noise_signal_dep (nirs4all.synthesis.fitter.FittedParameters attribute) noise_std (nirs4all.synthesis.fitter.OperatorVarianceParams attribute) NoiseModelConfig (class in nirs4all.synthesis.detectors) NONE (nirs4all.data.raw_multisource.ComboSelection attribute) (nirs4all.data.schema.config.CategoricalMode attribute) (nirs4all.data.schema.config.HeaderUnit attribute) nonlinear_interactions (nirs4all.synthesis.builder.BuilderState attribute) nonlinearity_coefficient (nirs4all.synthesis.detectors.DetectorConfig attribute) NORMAL (nirs4all.synthesis.products.VariationType attribute) Normalize (class in nirs4all.operators.transforms.scalers) normalize (nirs4all.api.inspector_views.ConfusionMatrixRequest attribute) (nirs4all.api.inspector_views.ConfusionMatrixResponse attribute) normalize() (nirs4all.visualization.chart_utils.normalizer.ScoreNormalizer static method) normalize_calibration_identity() (in module nirs4all.pipeline.dagml.fit_identity) normalize_component_amplitudes() (in module nirs4all.synthesis.components) normalize_config() (in module nirs4all.data.parsers.normalizer) normalize_conformal_calibration_cohort() (in module nirs4all.pipeline.dagml.conformal_contracts) normalize_coverages() (in module nirs4all.pipeline.dagml.conformal_contracts) normalize_dataset_document() (in module nirs4all.api.dataset_documents) normalize_evaluation_scope() (in module nirs4all.data.reduction) normalize_execution_resources() (in module nirs4all.pipeline.dagml.resources) normalize_figures() (in module nirs4all.visualization.display) normalize_fit_identity() (in module nirs4all.pipeline.dagml.fit_identity) normalize_fold_resume_package() (in module nirs4all.pipeline.dagml.native_pls_fold_hpo) normalize_generator_spec() (nirs4all.controllers.data.concat_transform.ConcatAugmentationController static method) (nirs4all.controllers.data.feature_augmentation.FeatureAugmentationController static method) (nirs4all.controllers.data.sample_augmentation.SampleAugmentationController static method) normalize_native_pls_phase_controls() (in module nirs4all.pipeline.dagml.native_pls_phase_controls) normalize_predict_identity() (in module nirs4all.pipeline.dagml.fit_identity) normalize_preprocessing_list() (in module nirs4all.analysis.transfer_utils) normalize_weights() (nirs4all.synthesis.prior.NIRSPriorConfig method) normalized (nirs4all.api.inspector_views.ConfusionMatrixCell attribute) NORMALIZED (nirs4all.synthesis.fitter.PreprocessingType attribute) normalized() (nirs4all.synthesis.components.SpectralComponent method) normalized_config (nirs4all.data.schema.validation.validators.ValidationResult attribute) NormalizedObservationTable (class in nirs4all.data.relations) norml() (in module nirs4all.operators.transforms.scalers) norris_williams() (in module nirs4all.operators.transforms.norris_williams) NorrisWilliams (class in nirs4all.operators.transforms.norris_williams) NorrisWilliamsOperator (class in nirs4all.operators.models.sklearn.aom_pls) NoSplitEvaluationWarning notes (nirs4all.synthesis.benchmarks.BenchmarkDatasetInfo attribute) NullHandler (class in nirs4all.core.logging.handlers) num_classes (nirs4all.operators.models.jax.generic.JaxMLPClassifier attribute) num_features (nirs4all.data.multimodal.MultimodalSpectroDataset property) (nirs4all.data.raw_multisource.RawMultiSourceDataset property) num_heads (nirs4all.operators.models.jax.nicon.TransformerBlock attribute) num_samples (nirs4all.data.multimodal.MultimodalSpectroDataset property) (nirs4all.data.raw_multisource.RawMultiSourceDataset property) num_targets() (in module nirs4all.pipeline.dagml.envelope) numerator (nirs4all.operators.models.sklearn.aom_fast.ScreeningCandidate attribute) NUMPY (nirs4all.synthesis.accelerated.AcceleratorBackend attribute) NumpyLoader (class in nirs4all.data.loaders.numpy_loader)

O

objective (nirs4all.pipeline.dagml.pipeline_objective_compiler.CompiledPipelineObjective attribute) ObjectiveTuningRunResult (class in nirs4all.pipeline.dagml.tuning_adapters) OBSERVATION (nirs4all.data.reduction.EvaluationScope attribute) (nirs4all.data.reduction.PredictionLevel attribute) (nirs4all.data.relations.UnitLevel attribute) observation_id (nirs4all.data.relations.ObservationRecord attribute) (nirs4all.pipeline.dagml.identity.SampleIdentity attribute) ObservationRecord (class in nirs4all.data.relations) observe_feature_step() (in module nirs4all.pipeline.execution.preprocessing) observed_coverage (nirs4all.pipeline.dagml.conformal_contracts.ConformalMetricSet attribute) offset (nirs4all.synthesis.fitter.InstrumentChain attribute) offset_std (nirs4all.synthesis.fitter.OperatorVarianceParams attribute) oh_band_positions (nirs4all.synthesis.fitter.SpectralProperties attribute) OH_COMBINATION (nirs4all.synthesis.environmental.SpectralRegion attribute) OH_FIRST_OVERTONE (nirs4all.synthesis.environmental.SpectralRegion attribute) OK (nirs4all.data.relations.QualityFlag attribute) OKLMPLS (class in nirs4all.operators.models.sklearn.oklmpls) on_incompatible (nirs4all.controllers.data.merge.SourceMergeConfig attribute) on_missing (nirs4all.operators.data.merge.MergeConfig attribute) on_shape_mismatch (nirs4all.operators.data.merge.MergeConfig attribute) on_unequal (nirs4all.operators.data.repetition.RepetitionConfig attribute) ones (nirs4all.synthesis.accelerated.AcceleratedArrays attribute) OOF (nirs4all.data.reduction.PredictionScope attribute) op_callback (nirs4all.pipeline.dagml.estimator.DagMLReplayExecution attribute) (nirs4all.pipeline.dagml.estimator.DagMLTrainingExecution attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLPreparedTrainingContracts attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingRequestContracts attribute) op_callback() (nirs4all.pipeline.dagml.methods_replay.MethodsN4mmReplayCallbacks method) op_counter (nirs4all.data.predictions.PredictionResult property) open_experiment() (in module nirs4all.api.public_results) operation_counter (nirs4all.controllers.models.components.identifier_generator.ModelIdentifiers attribute) operator_choice_variant_label() (in module nirs4all.pipeline.dagml_bridge) operator_name() (in module nirs4all.pipeline.dagml.torch_topology_replay) operator_params (nirs4all.synthesis.fitter.VarianceFitResult attribute) operator_sequence_variant_label() (in module nirs4all.pipeline.dagml_bridge) OperatorChain (class in nirs4all.operators.models.sklearn.aom_fast) operators (nirs4all.operators.models.sklearn.aom_fast.OperatorChain property) (nirs4all.pipeline.dagml.late_tuning.LateFusionTuningRecipe attribute) OperatorVarianceParams (class in nirs4all.synthesis.fitter) OPLS (class in nirs4all.operators.models.sklearn.opls) OPLSDA (class in nirs4all.operators.models.sklearn.oplsda) optimal_range (nirs4all.operators.augmentation.edge_artifacts.DetectorModel attribute)

optimal_set_2D() (in module nirs4all.operators.transforms.presets) optimize() (nirs4all.pipeline.dagml.tuning_adapters.N4MPipelineObjectiveAdapter method) (nirs4all.pipeline.dagml.tuning_adapters.OptunaPipelineObjectiveAdapter method) optimize_pipeline_objective() (in module nirs4all.pipeline.dagml.tuning_adapters) OptimizedComponentFitter (class in nirs4all.synthesis.fitter) OptimizedFitResult (class in nirs4all.synthesis.fitter) options (nirs4all.pipeline.dagml.rt.RtRunRequest attribute) OptunaPipelineObjectiveAdapter (class in nirs4all.pipeline.dagml.tuning_adapters) ORDER (nirs4all.operators.data.merge.DisjointSelectionCriterion attribute) order (nirs4all.synthesis.wavenumber.OvertoneResult attribute) ORDERED (nirs4all.data.relations.RepOrder attribute) OrderedSearchSpaceSpec (class in nirs4all.api.tuning) origin_int (nirs4all.pipeline.dagml.identity.SampleIdentity attribute) origin_sample_id (nirs4all.data.relations.ComboRecord attribute) (nirs4all.data.relations.ObservationRecord attribute) original_manifest (nirs4all.pipeline.bundle.loader.BundleMetadata attribute) OrStrategy (class in nirs4all.pipeline.config.generator) ortho_loadings_ (nirs4all.operators.models.sklearn.kopls.KOPLS attribute) OSC (class in nirs4all.operators.transforms.orthogonalization) osc_components (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) OSCBase (class in nirs4all.operators.models.sklearn.aom_fast) oscillation_frequency (nirs4all.synthesis.fitter.PreprocessingInference attribute) outcome_fingerprint (nirs4all.api.native_witness.NativeMethodsExecutionClaim attribute) (nirs4all.api.native_witness.NativeMethodsTerminalExecutionClaim attribute) outcome_id (nirs4all.pipeline.dagml.estimator.DagMLReplayExecution attribute) (nirs4all.pipeline.dagml.estimator.DagMLTrainingExecution attribute) (nirs4all.pipeline.dagml.raw_replay_lowerer.RawArrayMethodsPortableRefitReplayCompiler attribute) (nirs4all.pipeline.dagml.raw_training_lowerer.RawArrayDagMLTrainingCompiler attribute) (nirs4all.pipeline.dagml.terminal_predict_lowerer.StrictMethodsTerminalPredictionExecution attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLPreparedTrainingContracts attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingRequestContracts attribute) outer_fold_set (nirs4all.pipeline.dagml.native_pls_fold_hpo.NativePlsFoldPlan attribute) OUTLIER (nirs4all.data.relations.QualityFlag attribute) outlier_threshold (nirs4all.data.reduction.ReductionPlan attribute) outlier_values (nirs4all.api.inspector_views.CandlestickCategory attribute) output_as (nirs4all.operators.data.merge.MergeConfig attribute) output_layout_shape (nirs4all.visualization.pipeline_diagram.PipelineNode attribute) output_level (nirs4all.data.reduction.ReductionPlan attribute) output_name (nirs4all.controllers.data.merge.SourceMergeConfig attribute) outputs (nirs4all.pipeline.execution.result.StepResult attribute) overall_pass (nirs4all.synthesis.validation.SpectralRealismScore attribute) OvertoneResult (class in nirs4all.synthesis.wavenumber)

P

p (nirs4all.operators.models.sklearn.aom_pls.LinearSpectralOperator attribute) package (nirs4all.api.native_refit_result.NativeMethodsRefitResult property) (nirs4all.pipeline.dagml.core_archive_replay.CoreArchiveValidation attribute) (nirs4all.pipeline.dagml.raw_replay_lowerer.RawArrayMethodsPortableRefitReplayCompiler attribute) package_id (nirs4all.pipeline.dagml.terminal_predict_lowerer.StrictMethodsTerminalPredictionExecution attribute) package_json() (nirs4all.api.native_refit_result.NativeMethodsRefitResult method) package_version (nirs4all.pipeline.dagml.native_client.DagMLNativeCapabilities attribute) PAD (nirs4all.data.relations.MissingRepetitionPolicy attribute) (nirs4all.data.relations.MissingSourcePolicy attribute) (nirs4all.operators.data.merge.MissingPredictionPolicy attribute) (nirs4all.operators.data.merge.ShapeMismatchStrategy attribute) (nirs4all.operators.data.merge.SourceIncompatibleStrategy attribute) (nirs4all.operators.data.repetition.UnequelRepsStrategy attribute) PADDED (nirs4all.data.relations.QualityFlag attribute) padding (nirs4all.operators.models.jax.nicon.DepthwiseConv1D attribute) (nirs4all.operators.models.jax.nicon.MaxPooling1D attribute) (nirs4all.operators.models.jax.nicon.SeparableConv1D attribute) paired_spectral_distances() (in module nirs4all.analysis.playground_distances) pairwise_comparison() (nirs4all.visualization.analysis.branch.BranchAnalyzer method) param_name (nirs4all.api.inspector_views.HyperparameterRequest attribute) (nirs4all.api.inspector_views.HyperparameterResponse attribute) param_value (nirs4all.api.inspector_views.HyperparameterPoint attribute) parameter_patches() (nirs4all.pipeline.dagml.pipeline_objective_compiler.CompiledPipelineObjective method) ParameterPatch (class in nirs4all.api.tuning) parameters (nirs4all.api.tuning.OrderedSearchSpaceSpec attribute) (nirs4all.data.reduction.ReducerState attribute) params (nirs4all.pipeline.dagml.pipeline_objective.PipelineObjectiveResult attribute) (nirs4all.synthesis.domains.ConcentrationPrior attribute) parent (nirs4all.core.logging.context.BranchContext attribute) parent_ids (nirs4all.visualization.pipeline_diagram.PipelineNode attribute) ParquetLoader (class in nirs4all.data.loaders.parquet_loader) parse() (nirs4all.controllers.data.merge.MergeConfigParser class method) (nirs4all.controllers.splitters.fold_file_loader.FoldFileParser method) (nirs4all.data.parsers.base.BaseParser method) (nirs4all.data.parsers.files_parser.FilesParser method) (nirs4all.data.parsers.files_parser.SourcesParser method) (nirs4all.data.parsers.files_parser.VariationsParser method) (nirs4all.data.parsers.folder_parser.FolderParser method) parse_artifact_id() (in module nirs4all.pipeline.storage.artifacts.utils) parse_artifact_id_v3() (in module nirs4all.pipeline.storage.artifacts.operator_chain) parse_conformal_calibration_spec() (in module nirs4all.pipeline.dagml.conformal_contracts) parse_constraints() (in module nirs4all.pipeline.config.generator) parse_expanded_config_steps() (in module nirs4all.pipeline.analysis.splitter_config) parse_filename() (in module nirs4all.pipeline.storage.artifacts.utils) parse_numeric_headers() (in module nirs4all.utils.header_units) parse_relation_config() (in module nirs4all.data.relations) parse_value_condition() (in module nirs4all.controllers.data.branch_utils) parse_warm_start_request() (in module nirs4all.pipeline.dagml.cv_weight_transfer) ParserResult (class in nirs4all.data.parsers.base) partial_fit() (nirs4all.operators.models.sklearn.recursive_pls.RecursivePLS method) (nirs4all.operators.transforms.scalers.Normalize method) (nirs4all.operators.transforms.scalers.SimpleScale method) (nirs4all.operators.transforms.signal.Baseline method) PARTIAL_MODEL (nirs4all.data.relations.MissingSourcePolicy attribute) (nirs4all.operators.data.merge.MissingPredictionPolicy attribute) particle_size_config (nirs4all.synthesis.fitter.FittedParameters attribute) particle_size_factor (nirs4all.synthesis.scattering.ScatteringCoefficientConfig attribute) particle_size_range (nirs4all.synthesis.prior.NIRSPriorConfig attribute) particle_size_um (nirs4all.synthesis.measurement_modes.ScatteringConfig attribute) particle_size_variation (nirs4all.synthesis.measurement_modes.ScatteringConfig attribute) ParticleSizeAugmenter (class in nirs4all.operators.augmentation.scattering) ParticleSizeDistribution (class in nirs4all.synthesis.scattering) Partition (class in nirs4all.data.relations) partition (nirs4all.api.inspector_views.ConfusionMatrixRequest attribute) (nirs4all.api.inspector_views.ConfusionMatrixResponse attribute) (nirs4all.api.inspector_views.FoldStabilityRequest attribute) (nirs4all.api.inspector_views.ScatterRequest attribute) (nirs4all.api.inspector_views.ScatterResponse attribute) (nirs4all.api.inspector_views.ScoreRef attribute) (nirs4all.controllers.models.components.prediction_assembler.PartitionPrediction attribute) (nirs4all.data.relations.ObservationRecord attribute) PARTITION (nirs4all.data.schema.validation.error_codes.ErrorCategory attribute) partition (nirs4all.operators.filters.report.FilteringReport attribute) (nirs4all.pipeline.config.context.DataSelector attribute) partition_column (nirs4all.controllers.data.merge.DisjointBranchAnalysis attribute) partition_info (nirs4all.controllers.models.stacking.branch_validator.BranchInfo attribute) PartitionConfig (class in nirs4all.data.schema.config) partitioner_routing (nirs4all.pipeline.bundle.loader.BundleMetadata attribute) PartitionPrediction (class in nirs4all.controllers.models.components.prediction_assembler) partitions (nirs4all.controllers.models.components.prediction_assembler.PredictionRecord attribute) (nirs4all.data.raw_multisource.AlignedMaterialization attribute) passed (nirs4all.synthesis.validation.MetricResult attribute) PASTE (nirs4all.synthesis.prior.MatrixType attribute) patch() (nirs4all.api.tuning.OrderedSearchSpaceSpec method) patches_from_mapping() (nirs4all.api.tuning.OrderedSearchSpaceSpec method) path (nirs4all.api.tuning.ParameterPatch attribute) (nirs4all.api.tuning.SearchSpaceParameter attribute) (nirs4all.core.logging.context.BranchContext attribute) (nirs4all.pipeline.config.generator.ValidationError attribute) (nirs4all.pipeline.execution.result.ArtifactMeta attribute) (nirs4all.pipeline.run.DatasetInfo attribute) (nirs4all.workspace.compat.WorkspaceFormatInfo attribute) path_length_bounds (nirs4all.synthesis.fitter.DerivativeAwareForwardModelFitter attribute) (nirs4all.synthesis.fitter.ForwardModelFitter attribute) path_length_mm (nirs4all.synthesis.measurement_modes.TransflectanceConfig attribute) (nirs4all.synthesis.measurement_modes.TransmittanceConfig attribute) path_length_std (nirs4all.synthesis.fitter.FittedParameters attribute) path_length_variation (nirs4all.synthesis.measurement_modes.TransmittanceConfig attribute) PathLengthAugmenter (class in nirs4all.operators.augmentation.synthesis) paths (nirs4all.api.tuning.OrderedSearchSpaceSpec property) pattern (nirs4all.data.repetition_detection.RepetitionGroups attribute) PAUSED (nirs4all.pipeline.run.RunStatus attribute) PBS (nirs4all.synthesis.instruments.DetectorType attribute) PBSE (nirs4all.synthesis.instruments.DetectorType attribute) pca_explained_variance (nirs4all.synthesis.fitter.SpectralProperties attribute) pca_n_components_95 (nirs4all.synthesis.fitter.SpectralProperties attribute) pca_params (nirs4all.synthesis.fitter.VarianceFitResult attribute) PCAVarianceParams (class in nirs4all.synthesis.fitter) PCR (class in nirs4all.operators.models.sklearn.pcr) PEAK_DENSITY (nirs4all.synthesis.validation.RealismMetric attribute) peak_density_ratio (nirs4all.synthesis.validation.SpectralRealismScore attribute) peak_positions (nirs4all.synthesis.fitter.SpectralProperties attribute) peak_qe (nirs4all.synthesis.detectors.DetectorSpectralResponse attribute) peak_wavelength (nirs4all.synthesis.detectors.DetectorSpectralResponse attribute) peak_wavenumbers (nirs4all.synthesis.fitter.SpectralProperties attribute) pending_bytes (nirs4all.pipeline.dagml.cv_weight_transfer.CVWeightTransferStore property) pending_count (nirs4all.pipeline.dagml.cv_weight_transfer.CVWeightTransferStore property) pending_tombstone_count() (nirs4all.pipeline.storage.array_store.ArrayStore method) per_sample_std_variation (nirs4all.synthesis.fitter.PreprocessingInference attribute) PercentToFraction (class in nirs4all.operators.transforms.signal_conversion) PerModelSelection (class in nirs4all.pipeline.execution.refit.model_selector) PERSIST (nirs4all.data.reduction.ReductionRole attribute) persist() (in module nirs4all.pipeline.storage.artifacts.artifact_persistence) PETROCHEMICAL (nirs4all.synthesis.benchmarks.BenchmarkDomain attribute) (nirs4all.synthesis.domains.DomainCategory attribute) PHARMACEUTICAL (nirs4all.synthesis.benchmarks.BenchmarkDomain attribute) (nirs4all.synthesis.domains.DomainCategory attribute) phase (nirs4all.core.logging.events.LogEvent attribute) phase_complete() (nirs4all.core.logging.config.Nirs4allLogger method) phase_start() (nirs4all.core.logging.config.Nirs4allLogger method) PHYSICAL_SAMPLE (nirs4all.data.relations.UnitLevel attribute) physical_sample_id (nirs4all.data.reduction.PredictionUnitId attribute) (nirs4all.data.relations.ComboRecord attribute) (nirs4all.data.relations.ObservationRecord attribute) physical_sample_ids (nirs4all.api.tuning.TuningConformalScoreCalibration attribute) (nirs4all.api.tuning.TuningScoreData attribute) (nirs4all.api.tuning.TuningWinner attribute) (nirs4all.data.raw_multisource.RawMultiSourceDataset property) (nirs4all.data.relations.NormalizedObservationTable property) physical_to_internal (nirs4all.data.relations.SampleRelationPlan property) pipeline (nirs4all.api.native_session.NativeMethodsSession property) (nirs4all.pipeline.dagml.late_tuning.LateFusionTuningRecipe attribute) (nirs4all.pipeline.dagml.native_pls_fold_hpo.NativePlsFoldPlan attribute) (nirs4all.pipeline.dagml.native_pls_phase_controls.NativePlsPhaseControls attribute) pipeline_cv_policy_enabled() (in module nirs4all.controllers.models.pipeline_cv) pipeline_cv_policy_required() (in module nirs4all.controllers.models.pipeline_cv) pipeline_dsl (nirs4all.pipeline.dagml.rt.RtRunRequest attribute) pipeline_id (nirs4all.api.inspector_views.BranchTopologyResponse attribute) (nirs4all.pipeline.config.context.BestChainEntry attribute) (nirs4all.pipeline.storage.artifacts.utils.ExecutionPath attribute) pipeline_level() (nirs4all.core.logging.progress.MultiLevelProgress method) pipeline_name (nirs4all.api.inspector_views.BranchTopologyResponse attribute) pipeline_type (nirs4all.analysis.results.TransferResult attribute) pipeline_uid (nirs4all.pipeline.bundle.loader.BundleMetadata attribute) PipelineDiagram (class in nirs4all.visualization.pipeline_diagram) PipelineLibrary (class in nirs4all.pipeline.storage.library) PipelineNode (class in nirs4all.visualization.pipeline_diagram) PipelineObjective (class in nirs4all.pipeline.dagml.pipeline_objective) PipelineObjectiveResult (class in nirs4all.pipeline.dagml.pipeline_objective) PipelineOrchestrator (class in nirs4all.pipeline.execution.orchestrator) PipelineState (class in nirs4all.pipeline.config.context) PipelineTopology (class in nirs4all.pipeline.analysis.topology) plan (nirs4all.data.meta_features.AlignedMetaFeatures attribute) (nirs4all.operators.data.rep_fusion.RepFusionConfig attribute) plan_id (nirs4all.pipeline.dagml.raw_training_lowerer.RawArrayDagMLTrainingCompiler attribute) (nirs4all.pipeline.dagml.rt.RtResult attribute) playground_metadata_columns() (in module nirs4all.analysis.playground_dataset) PlaygroundDatasetSelection (class in nirs4all.analysis.playground_dataset) plot_all() (nirs4all.visualization.analysis.transfer.PreprocPCAEvaluator method) plot_all_datasets_pca() (nirs4all.visualization.analysis.transfer.PreprocPCAEvaluator method) plot_beeswarm() (nirs4all.visualization.analysis.shap.ShapAnalyzer method) plot_beeswarm_binned() (nirs4all.visualization.analysis.shap.ShapAnalyzer method) plot_branch_boxplot() (nirs4all.visualization.predictions.PredictionAnalyzer method) plot_branch_comparison() (nirs4all.visualization.predictions.PredictionAnalyzer method) plot_branch_diagram() (nirs4all.visualization.predictions.PredictionAnalyzer method) plot_branch_heatmap() (nirs4all.visualization.predictions.PredictionAnalyzer method) plot_candlestick() (nirs4all.visualization.predictions.PredictionAnalyzer method) plot_confusion_matrix() (nirs4all.visualization.predictions.PredictionAnalyzer method) plot_cross_dataset_distances() (nirs4all.visualization.analysis.transfer.PreprocPCAEvaluator method) plot_cross_dataset_heatmap() (nirs4all.visualization.analysis.transfer.PreprocPCAEvaluator method) plot_dependence() (nirs4all.visualization.analysis.shap.ShapAnalyzer method) plot_distance_matrices() (nirs4all.visualization.analysis.transfer.PreprocPCAEvaluator method) plot_distance_reduction_ranking() (nirs4all.visualization.analysis.transfer.PreprocPCAEvaluator method) plot_force() (nirs4all.visualization.analysis.shap.ShapAnalyzer method) plot_heatmap() (nirs4all.visualization.predictions.PredictionAnalyzer method) plot_histogram() (nirs4all.visualization.predictions.PredictionAnalyzer method) plot_improvement_heatmap() (nirs4all.analysis.results.TransferSelectionResults method) plot_metrics_comparison() (nirs4all.analysis.results.TransferSelectionResults method) plot_nested_branches() (nirs4all.visualization.predictions.PredictionAnalyzer method) plot_pair() (nirs4all.visualization.analysis.transfer.PreprocPCAEvaluator method) plot_pipeline_diagram() (in module nirs4all.visualization.pipeline_diagram) plot_preservation_summary() (nirs4all.visualization.analysis.transfer.PreprocPCAEvaluator method) plot_quality_metric_convergence() (nirs4all.visualization.analysis.transfer.PreprocPCAEvaluator method) plot_ranking() (nirs4all.analysis.results.TransferSelectionResults method) plot_spectral_importance() (nirs4all.visualization.analysis.shap.ShapAnalyzer method) plot_summary() (nirs4all.visualization.analysis.shap.ShapAnalyzer method) plot_top_k() (nirs4all.visualization.predictions.PredictionAnalyzer method) plot_waterfall() (nirs4all.visualization.analysis.shap.ShapAnalyzer method) plot_waterfall_binned() (nirs4all.visualization.analysis.shap.ShapAnalyzer method) plugin (nirs4all.api.advanced_capabilities.AdvancedApiCapabilityDecision attribute) points (nirs4all.api.inspector_views.HyperparameterResponse attribute) (nirs4all.api.inspector_views.ScatterResponse attribute) POLYMER (nirs4all.synthesis.domains.DomainCategory attribute) POLYNOMIAL (nirs4all.synthesis.scattering.ScatteringModel attribute) polynomial_degree (nirs4all.synthesis.builder.BuilderState attribute) PolynomialBaselineDrift (class in nirs4all.operators.augmentation.spectral) PolynomialFeaturizer (class in nirs4all.operators.models.sklearn.oklmpls) POPPLSClassifier (in module nirs4all.operators.models.sklearn.pop_pls_classifier) POPPLSRegressor (in module nirs4all.operators.models.sklearn.aom_pls) portable_artifacts_required (nirs4all.api.native_witness.NativeMethodsExecutionClaim attribute) (nirs4all.api.native_witness.NativeMethodsTerminalExecutionClaim attribute) PortableMethodSpec (class in nirs4all.pipeline.config.portable_method_specs) PortableN4MRolePipeline (in module nirs4all.pipeline.portable_n4m_roles) PortableN4MTrainedPipeline (class in nirs4all.pipeline.portable_n4m_trained) POWDER (nirs4all.synthesis.prior.MatrixType attribute) pp_names (nirs4all.operators.data.repetition.RepetitionConfig attribute) PrecomputedFoldSplitter (class in nirs4all.controllers.models.pipeline_cv) pred_label (nirs4all.api.inspector_views.ConfusionMatrixCell attribute) PREDICT (nirs4all.data.relations.Partition attribute) predict (nirs4all.data.schema.config.PartitionConfig attribute) predict() (in module nirs4all.api.predict) (nirs4all.api.native_refit_result.NativeMethodsRefitResult method) (nirs4all.api.native_session.NativeMethodsSession method) (nirs4all.controllers.models.jax_wrapper.JaxModelWrapper method) (nirs4all.operators.methods.n4m_ops.MethodsPLS method) (nirs4all.operators.models.multimodal.MultimodalClassifier method) (nirs4all.operators.models.multimodal.MultimodalRegressor method) (nirs4all.operators.models.sklearn.aom_fast.FastAOMPLSRidge method) (nirs4all.operators.models.sklearn.aom_fast.HardAOMChainPLSRidge method) (nirs4all.operators.models.sklearn.aom_fast.SingleChainPLSRidge method) (nirs4all.operators.models.sklearn.aom_fast.SoftAOMChainPLSRidge method) (nirs4all.operators.models.sklearn.aom_fast.SparseMultiKernelRidge method) (nirs4all.operators.models.sklearn.aom_pls_aomlib.AOMPLSAomlibRegressor method) (nirs4all.operators.models.sklearn.aom_ridge.AOMLocalRidge method) (nirs4all.operators.models.sklearn.aom_ridge.AOMMultiBranchMKL method) (nirs4all.operators.models.sklearn.aom_ridge.AOMMultiKernelRidge method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeAutoSelector method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeBlender method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeClassifier method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgePLS method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgePLSCV method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeRegressor method) (nirs4all.operators.models.sklearn.dipls.DiPLS method) (nirs4all.operators.models.sklearn.fckpls.FCKPLS method) (nirs4all.operators.models.sklearn.ikpls.IKPLS method) (nirs4all.operators.models.sklearn.ipls.IntervalPLS method) (nirs4all.operators.models.sklearn.kopls.KOPLS method) (nirs4all.operators.models.sklearn.lwpls.LWPLS method) (nirs4all.operators.models.sklearn.mbpls.MBPLS method) (nirs4all.operators.models.sklearn.oklmpls.OKLMPLS method) (nirs4all.operators.models.sklearn.opls.OPLS method) (nirs4all.operators.models.sklearn.oplsda.OPLSDA method) (nirs4all.operators.models.sklearn.pcr.PCR method) (nirs4all.operators.models.sklearn.recursive_pls.RecursivePLS method) (nirs4all.operators.models.sklearn.robust_pls.RobustPLS method) (nirs4all.operators.models.sklearn.simpls.SIMPLS method) (nirs4all.operators.models.sklearn.sparsepls.SparsePLS method) (nirs4all.operators.models.sklearn.tabpfn_nirs.TabPFNNIRSRegressor method) (nirs4all.pipeline.bundle.loader.BundleLoader method) (nirs4all.pipeline.dagml.autogluon_estimator.DagMLAutoGluonEstimator method) (nirs4all.pipeline.dagml.estimator.DagMLPipelineEstimator method) (nirs4all.pipeline.dagml.framework_estimator.DagMLFrameworkEstimator method) (nirs4all.pipeline.dagml.run_paths.DuplicationFusionEstimator method) (nirs4all.pipeline.dagml.torch_topology_replay.CapturedTorchTopology method) (nirs4all.pipeline.execution.preprocessing.FoldPreprocessedModel method) (nirs4all.pipeline.minimal_predictor.MinimalPredictor method) (nirs4all.pipeline.portable_n4m_trained.PortableN4MTrainedPipeline method) (nirs4all.pipeline.portable_n4m_trained.RefittedN4MPipeline method) (nirs4all.pipeline.predictor.Predictor method) (nirs4all.sklearn.classifier.NIRSPipelineClassifier method)

predict_all_components() (nirs4all.operators.models.sklearn.lwpls.LWPLS method) predict_calibrated() (in module nirs4all.api.calibrate) predict_captured_artifact() (in module nirs4all.pipeline.dagml.general_replay) predict_core_methods_archive_v2() (in module nirs4all.pipeline.dagml.core_archive_replay) predict_dual() (nirs4all.operators.models.sklearn.aom_ridge.AOMMultiKernelRidge method) predict_dynamic() (nirs4all.operators.models.sklearn.oklmpls.OKLMPLS method) predict_envelope (nirs4all.pipeline.dagml.terminal_predict_lowerer.StrictMethodsTerminalPredictionExecution attribute) predict_file (nirs4all.data.schema.config.PartitionConfig attribute) predict_general_archive() (in module nirs4all.pipeline.dagml.general_archive) predict_general_result() (in module nirs4all.pipeline.dagml.general_archive) predict_general_workspace_chain() (in module nirs4all.pipeline.dagml.general_workspace) predict_identity_frame (nirs4all.pipeline.dagml.terminal_predict_lowerer.StrictMethodsTerminalPredictionExecution attribute) predict_initial_refit_output() (in module nirs4all.pipeline.dagml.initial_refit_replay) predict_input (nirs4all.pipeline.dagml.terminal_predict_lowerer.StrictMethodsTerminalPredictionExecution attribute) predict_methods_archive_v2_raw() (in module nirs4all.pipeline.dagml.native_archive_replay) predict_methods_archive_v2_raw_result() (in module nirs4all.pipeline.dagml.native_archive_replay) predict_methods_multimodal_archive() (in module nirs4all.pipeline.dagml.methods_multimodal) predict_native_pls_phase_archive() (in module nirs4all.pipeline.dagml.native_pls_phase_replay) predict_output() (nirs4all.pipeline.bundle.loader.BundleLoader method) predict_outputs() (nirs4all.pipeline.bundle.loader.BundleLoader method) predict_present_rows() (in module nirs4all.pipeline.dagml.source_missing) predict_proba() (nirs4all.operators.models.multimodal.MultimodalClassifier method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeClassifier method) (nirs4all.operators.models.sklearn.oplsda.OPLSDA method) (nirs4all.pipeline.dagml.autogluon_estimator.DagMLAutoGluonEstimator method) (nirs4all.pipeline.dagml.estimator.DagMLPipelineEstimator method) (nirs4all.pipeline.execution.preprocessing.FoldPreprocessedModel method) (nirs4all.pipeline.portable_n4m_trained.PortableN4MTrainedPipeline method) (nirs4all.sklearn.classifier.NIRSPipelineClassifier method) predict_scores() (nirs4all.pipeline.portable_n4m_trained.PortableN4MTrainedPipeline method) predict_torch_task() (in module nirs4all.pipeline.dagml.torch_topology_replay) predict_values (nirs4all.data.schema.config.PartitionConfig attribute) predict_with_fold_ensemble() (nirs4all.pipeline.minimal_predictor.MinimalPredictor method) predict_with_identity() (nirs4all.pipeline.dagml.estimator.DagMLPipelineEstimator method) predict_with_metadata() (nirs4all.pipeline.bundle.loader.BundleLoader method) prediction (nirs4all.pipeline.dagml.conformal_contracts.CalibratedRunResult attribute) PREDICTION (nirs4all.pipeline.resolver.SourceType attribute) prediction_branches (nirs4all.operators.data.merge.MergeConfig attribute) prediction_configs (nirs4all.operators.data.merge.MergeConfig attribute) PREDICTION_ID (nirs4all.pipeline.resolver.SourceType attribute) prediction_metadata() (nirs4all.data.reduction.ReductionPlan method) prediction_sample_ids (nirs4all.api.tuning.TuningCalibration attribute) (nirs4all.api.tuning.TuningScoreData attribute) (nirs4all.api.tuning.TuningWinner attribute) prediction_scope_from_legacy() (in module nirs4all.data.reduction) prediction_source_presence_metadata() (in module nirs4all.pipeline.dagml.source_missing) PredictionAggregator (class in nirs4all.controllers.data.merge) PredictionAnalyzer (class in nirs4all.visualization.predictions) PredictionCache (class in nirs4all.visualization.prediction_cache) PredictionFeatureVector (class in nirs4all.data.meta_features) PredictionLevel (class in nirs4all.data.reduction) PredictionRecord (class in nirs4all.controllers.models.components.prediction_assembler) PredictionResult (class in nirs4all.data.predictions) PredictionResultsList (class in nirs4all.data.predictions) PREDICTIONS (nirs4all.core.logging.events.EventType attribute) (nirs4all.operators.data.merge.MergeMode attribute) predictions (nirs4all.pipeline.dagml.rt.RtResult attribute) (nirs4all.pipeline.execution.result.StepResult attribute) predictions_merged (nirs4all.data.predictions.MergeReport attribute) PredictionsAdapter (class in nirs4all.visualization.chart_utils.predictions_adapter) PredictionScope (class in nirs4all.data.reduction) PredictionUnitId (class in nirs4all.data.reduction) Predictor (class in nirs4all.pipeline.predictor) predictor (nirs4all.api.calibrate.ConformalCalibrationData attribute) predictor_bundle (nirs4all.api.calibrate.ConformalCalibrationData attribute) predictor_chain_id (nirs4all.api.calibrate.ConformalCalibrationData attribute) predictor_fingerprint (nirs4all.api.calibrate.ConformalCalibrationData attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationArtifact attribute) predictor_path (nirs4all.api.calibrate.ConformalCalibrationData attribute) predictor_result (nirs4all.api.calibrate.ConformalCalibrationData attribute) predictors (nirs4all.pipeline.dagml.core_archive_replay.CoreArchiveValidation attribute) preflight_advanced_api() (in module nirs4all.api.advanced_capabilities) preflight_dagml_backend() (in module nirs4all.pipeline.dagml.run_backend) prepare() (nirs4all.controllers.base.BaseController method) (nirs4all.controllers.models.tensorflow.config.TensorFlowCompilationConfig static method) (nirs4all.controllers.models.tensorflow.config.TensorFlowFitConfig static method) prepare_and_call() (nirs4all.controllers.models.factory.ModelFactory static method) prepare_classification_structure() (in module nirs4all.pipeline.dagml.structural_classification) prepare_data() (nirs4all.controllers.models.tensorflow.data_prep.TensorFlowDataPreparation static method) prepare_data_provider() (in module nirs4all.pipeline.dagml.data_provider) prepare_features() (nirs4all.controllers.models.tensorflow.data_prep.TensorFlowDataPreparation static method) prepare_fold() (nirs4all.pipeline.execution.preprocessing.FoldPreprocessing method) prepare_late_tuning() (in module nirs4all.pipeline.dagml.late_tuning) prepare_named_torch_pipeline() (in module nirs4all.pipeline.dagml.named_torch) prepare_native_pls_fold_plan() (in module nirs4all.pipeline.dagml.native_pls_fold_hpo) prepare_refit() (nirs4all.pipeline.dagml.cv_weight_transfer.CVWeightTransferStore method) prepare_targets() (nirs4all.controllers.models.tensorflow.data_prep.TensorFlowDataPreparation static method) prepare_topology_structure() (in module nirs4all.pipeline.dagml.structural_topology) prepare_torch_runtime() (in module nirs4all.pipeline.dagml.torch_estimator) prepare_torch_structure() (in module nirs4all.pipeline.dagml.structural_torch) prepare_typed_structure() (in module nirs4all.pipeline.dagml.structural_multimodal) PreparedDagMLTrainingCompiler (class in nirs4all.pipeline.dagml.training_compiler) preprocessing (nirs4all.pipeline.execution.preprocessing.FoldPreprocessedModel attribute) preprocessing_chain (nirs4all.pipeline.bundle.loader.BundleMetadata attribute) (nirs4all.pipeline.retrainer.ExtractedPipeline attribute) preprocessing_inference (nirs4all.synthesis.fitter.FittedParameters attribute) preprocessing_list() (in module nirs4all.operators.transforms.presets) preprocessing_type (nirs4all.synthesis.fitter.FittedParameters attribute) (nirs4all.synthesis.fitter.PreprocessingInference attribute) PreprocessingImpactEntry (class in nirs4all.api.inspector_views) PreprocessingImpactRequest (class in nirs4all.api.inspector_views) PreprocessingImpactResponse (class in nirs4all.api.inspector_views) PreprocessingInference (class in nirs4all.synthesis.fitter) PreprocessingReplay (class in nirs4all.pipeline.execution.preprocessing) preprocessings (nirs4all.api.inspector_views.FoldScoreEntry attribute) (nirs4all.api.inspector_views.ScatterPoint attribute) PreprocessingType (class in nirs4all.synthesis.fitter) PreprocPCAEvaluator (class in nirs4all.visualization.analysis.transfer) PRESERVE (nirs4all.data.schema.config.CategoricalMode attribute) preserve_order (nirs4all.operators.data.repetition.RepetitionConfig attribute) preserve_source_info (nirs4all.controllers.data.merge.SourceMergeConfig attribute) preview_arrays() (in module nirs4all.analysis.playground_facade) preview_dataset() (in module nirs4all.api.dataset_inspection) preview_spectro_dataset() (in module nirs4all.analysis.playground_facade) primitive_bank (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) print_backend_status() (in module nirs4all.utils.backend) print_expansion_tree() (in module nirs4all.pipeline.config.generator) print_report() (nirs4all.operators.filters.report.FilteringReport method) priority (nirs4all.controllers.charts.augmentation.AugmentationChartController attribute) (nirs4all.controllers.charts.exclusion.ExclusionChartController attribute) (nirs4all.controllers.charts.folds.FoldChartController attribute) (nirs4all.controllers.charts.spectra.SpectraChartController attribute) (nirs4all.controllers.charts.spectral_distribution.SpectralDistributionController attribute) (nirs4all.controllers.charts.targets.YChartController attribute) (nirs4all.controllers.data.auto_transfer_preproc.AutoTransferPreprocessingController attribute) (nirs4all.controllers.data.branch.BranchController attribute) (nirs4all.controllers.data.concat_transform.ConcatAugmentationController attribute) (nirs4all.controllers.data.exclude.ExcludeController attribute) (nirs4all.controllers.data.feature_augmentation.FeatureAugmentationController attribute) (nirs4all.controllers.data.feature_selection.FeatureSelectionController attribute) (nirs4all.controllers.data.merge.MergeController attribute) (nirs4all.controllers.data.rep_fusion.RepFusionController attribute) (nirs4all.controllers.data.repetition.RepToPPController attribute) (nirs4all.controllers.data.repetition.RepToSourcesController attribute) (nirs4all.controllers.data.resampler.ResamplerController attribute) (nirs4all.controllers.data.sample_augmentation.SampleAugmentationController attribute) (nirs4all.controllers.data.tag.TagController attribute) (nirs4all.controllers.flow.dummy.DummyController attribute) (nirs4all.controllers.models.autogluon_model.AutoGluonModelController attribute) (nirs4all.controllers.models.jax_model.JaxModelController attribute) (nirs4all.controllers.models.meta_model.MetaModelController attribute) (nirs4all.controllers.models.residual_model.ResidualModelController attribute) (nirs4all.controllers.models.tensorflow_model.TensorFlowModelController attribute) (nirs4all.controllers.models.torch_model.PyTorchModelController attribute) (nirs4all.controllers.splitters.fold_file_loader.FoldFileLoaderController attribute) (nirs4all.controllers.splitters.split.CrossValidatorController attribute) (nirs4all.controllers.transforms.y_transformer.YTransformerMixinController attribute) (nirs4all.data.loaders.archive_loader.EnhancedZipLoader attribute) (nirs4all.data.loaders.archive_loader.TarLoader attribute) (nirs4all.data.loaders.csv_loader_new.CSVLoader attribute) (nirs4all.data.loaders.excel_loader.ExcelLoader attribute) (nirs4all.data.loaders.matlab_loader.MatlabLoader attribute) (nirs4all.data.loaders.numpy_loader.NumpyLoader attribute) (nirs4all.data.loaders.parquet_loader.ParquetLoader attribute) (nirs4all.pipeline.config.generator.CartesianStrategy attribute) (nirs4all.pipeline.config.generator.ChainStrategy attribute) (nirs4all.pipeline.config.generator.ExpansionStrategy attribute) (nirs4all.pipeline.config.generator.GridStrategy attribute) (nirs4all.pipeline.config.generator.LogRangeStrategy attribute) (nirs4all.pipeline.config.generator.OrStrategy attribute) (nirs4all.pipeline.config.generator.RangeStrategy attribute) (nirs4all.pipeline.config.generator.SampleStrategy attribute) (nirs4all.pipeline.config.generator.ZipStrategy attribute) PriorSampler (class in nirs4all.synthesis.prior) proba_shape (nirs4all.controllers.models.stacking.classification.ClassificationInfo attribute) ProceduralComponentConfig (class in nirs4all.synthesis.procedural) ProceduralComponentGenerator (class in nirs4all.synthesis.procedural) PROCESS (nirs4all.synthesis.instruments.InstrumentCategory attribute) process_hyperparameters() (nirs4all.controllers.models.jax_model.JaxModelController method) (nirs4all.controllers.models.tensorflow_model.TensorFlowModelController method) (nirs4all.controllers.models.torch_model.PyTorchModelController method) processing (nirs4all.pipeline.config.context.DataSelector attribute) processing_names (nirs4all.pipeline.execution.step_cache.CachedStepState attribute) processings (nirs4all.pipeline.execution.preprocessing.PreprocessingReplay attribute) product() (in module nirs4all.api.generate) product_template_info() (in module nirs4all.synthesis.products) ProductGenerator (class in nirs4all.synthesis.products) ProductTemplate (class in nirs4all.synthesis.products) PROGRESS (nirs4all.core.logging.events.EventType attribute) progress() (nirs4all.core.logging.config.Nirs4allLogger method) progress_bar() (in module nirs4all.core.logging.progress) ProgressBar (class in nirs4all.core.logging.progress) ProgressConfig (class in nirs4all.core.logging.progress) project (nirs4all.core.logging.context.RunState attribute) (nirs4all.pipeline.run.RunConfig attribute) project_methods_archive_v2_conformal_presentation() (in module nirs4all.pipeline.dagml.native_archive_replay) project_named_stacking() (in module nirs4all.pipeline.dagml.named_stacking) project_objective_tuning_to_run_result() (in module nirs4all.pipeline.dagml.tuning_projection) project_vote_evidence() (in module nirs4all.pipeline.dagml.native_vote) protein_band_intensity (nirs4all.synthesis.fitter.SpectralProperties attribute) protocol (nirs4all.api.inspector_views.ScoreRef attribute) PRUNE (nirs4all.core.logging.events.EventType attribute) pruner (nirs4all.api.tuning.NativeTuning attribute) PSEUDO_FOLD_IDS (in module nirs4all.data.reduction) publish_workspace_result() (in module nirs4all.pipeline.dagml.workspace_projection) put() (nirs4all.pipeline.storage.artifacts.artifact_loader.LRUCache method) (nirs4all.visualization.prediction_cache.PredictionCache method) pybaseline_correction() (in module nirs4all.operators.transforms.nirs) PyBaselineCorrection (class in nirs4all.operators.transforms.nirs) PyTorchModelController (class in nirs4all.controllers.models.torch_model)

Q

q25 (nirs4all.api.inspector_views.CandlestickCategory attribute) q75 (nirs4all.api.inspector_views.CandlestickCategory attribute) qhat (nirs4all.pipeline.dagml.conformal_contracts.ConformalIntervalBlock attribute) (nirs4all.pipeline.dagml.native_archive_replay.NativeArchiveConformalInterval attribute) qhat_by_coverage (nirs4all.pipeline.dagml.conformal_contracts.SplitConformalCalibrator attribute) qualified_generated_by_source_pipeline() (in module nirs4all.pipeline.dagml.generated_views)

qualified_generated_model_pipeline() (in module nirs4all.pipeline.dagml.generated_views) quality_flag (nirs4all.data.relations.ObservationRecord attribute) QualityFlag (class in nirs4all.data.relations) quantization_noise_enabled (nirs4all.synthesis.detectors.NoiseModelConfig attribute) QUEUED (nirs4all.pipeline.run.RunStatus attribute) quick_realism_check() (in module nirs4all.synthesis.validation)

R

R2 (nirs4all.operators.data.merge.DisjointSelectionCriterion attribute) r_squared (nirs4all.synthesis.fitter.ComponentFitResult attribute) (nirs4all.synthesis.fitter.OptimizedFitResult attribute) (nirs4all.synthesis.fitter.RealBandFitResult attribute) raise_if_invalid() (nirs4all.data.schema.validation.validators.ValidationResult method) random_normal (nirs4all.synthesis.accelerated.AcceleratedArrays attribute) RANDOM_SEEDED (nirs4all.data.raw_multisource.ComboSelection attribute) random_state (nirs4all.api.native_session.NativeMethodsSession property) (nirs4all.data.raw_multisource.CombinationPlan attribute) (nirs4all.data.raw_multisource.RepresentationPlan attribute) (nirs4all.data.schema.config.PartitionConfig attribute) (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) (nirs4all.pipeline.analysis.splitter_config.SplitterConfig attribute) (nirs4all.pipeline.run.RunConfig attribute) (nirs4all.synthesis.builder.BuilderState attribute) random_uniform (nirs4all.synthesis.accelerated.AcceleratedArrays attribute) Random_X_Operation (class in nirs4all.operators.augmentation.random) RangeDiscretizer (class in nirs4all.operators.transforms.targets) RangeStrategy (class in nirs4all.pipeline.config.generator) rank (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) (nirs4all.operators.models.sklearn.aom_fast.LowRankBase attribute) rank_branches() (nirs4all.visualization.analysis.branch.BranchAnalyzer method) ranking (nirs4all.analysis.results.TransferSelectionResults attribute) (nirs4all.pipeline.execution.refit.config_extractor.RefitCriterion attribute) rankings (nirs4all.api.inspector_views.RankingsResponse attribute) RankingsResponse (class in nirs4all.api.inspector_views) rate (nirs4all.operators.models.jax.nicon.SpatialDropout1D attribute) RAW_ABSORBANCE (nirs4all.synthesis.fitter.PreprocessingType attribute) raw_arrays_to_spectro_dataset() (in module nirs4all.pipeline.dagml.raw_training_lowerer) raw_features() (nirs4all.pipeline.execution.preprocessing.FoldPreprocessing method) raw_metrics (nirs4all.analysis.results.TransferSelectionResults attribute) RAW_MULTISOURCE (nirs4all.data.raw_multisource.RepresentationStage attribute) RAW_REFLECTANCE (nirs4all.synthesis.fitter.PreprocessingType attribute) RawArrayDagMLTrainingCompiler (class in nirs4all.pipeline.dagml.raw_training_lowerer) RawArrayMethodsPortableRefitReplayCompiler (class in nirs4all.pipeline.dagml.raw_replay_lowerer) RawArrayMethodsReplayError RawBase (class in nirs4all.operators.models.sklearn.aom_fast) RawMultiSourceDataset (class in nirs4all.data.raw_multisource) RAYLEIGH (nirs4all.synthesis.scattering.ScatteringModel attribute) RBFFeaturizer (class in nirs4all.operators.models.sklearn.oklmpls) read_inspector_view() (in module nirs4all.api.inspector_views) read_model_catalogue() (in module nirs4all.pipeline.storage.model_catalogue) read_native_pls_phase_archive() (in module nirs4all.pipeline.dagml.native_pls_phase_replay) read_native_results() (in module nirs4all.pipeline.dagml.native_results) read_noise_electrons (nirs4all.synthesis.detectors.NoiseModelConfig attribute) read_noise_enabled (nirs4all.synthesis.detectors.NoiseModelConfig attribute) read_portable_predictor_archive_v2() (in module nirs4all.api.portable_archive) RealBandFitResult (class in nirs4all.synthesis.fitter) RealBandFitter (class in nirs4all.synthesis.fitter) RealDataFitter (class in nirs4all.synthesis.fitter) realism_score (nirs4all.synthesis.validation.DatasetComparisonResult attribute) RealismMetric (class in nirs4all.synthesis.validation) reason (nirs4all.api.advanced_capabilities.AdvancedApiCapabilityDecision attribute) (nirs4all.api.inspector_views.BiasVarianceResponse attribute) (nirs4all.api.inspector_views.ConfusionMatrixResponse attribute) (nirs4all.api.inspector_views.HyperparameterResponse attribute) (nirs4all.operators.filters.report.FilterResult attribute) receipt_fingerprint (nirs4all.api.native_witness.NativeMethodsTerminalExecutionClaim attribute) recipe_from_estimator() (in module nirs4all.pipeline.dagml.methods_multimodal) reconcile_studio_job_lineage() (in module nirs4all.api.studio_lineage) reconstruct_object() (nirs4all.controllers.models.factory.ModelFactory static method) record_execution_lane() (in module nirs4all.pipeline.dagml.methods_lane) record_studio_run_provenance() (in module nirs4all.api.studio_lineage) records (nirs4all.data.relations.NormalizedObservationTable attribute) records_for_sample() (nirs4all.data.relations.NormalizedObservationTable method) recover_studio_job_lineage() (in module nirs4all.api.studio_lineage) RecursivePLS (class in nirs4all.operators.models.sklearn.recursive_pls) REDUCE (nirs4all.operators.data.merge.MetaFeatureAdapter attribute) reduce() (nirs4all.data.reduction.ReductionPlan method) ReducerState (class in nirs4all.data.reduction) Reduction_Block_A() (in module nirs4all.operators.models.tensorflow.legacy.inception_1d_cnn) Reduction_Block_B() (in module nirs4all.operators.models.tensorflow.legacy.inception_1d_cnn) reduction_id (nirs4all.data.reduction.ReductionPlan attribute) reduction_plan (nirs4all.pipeline.execution.refit.config_extractor.RefitCriterion attribute) (nirs4all.pipeline.execution.refit.config_extractor.RefitSlotPlan attribute) reduction_plans (nirs4all.data.relation_replay_manifest.RelationReplayManifest attribute) ReductionAxis (class in nirs4all.data.reduction) ReductionError ReductionMethod (class in nirs4all.data.reduction) ReductionPlan (class in nirs4all.data.reduction) ReductionRole (class in nirs4all.data.reduction) reference (nirs4all.pipeline.analysis.splitter_config.SplitterConfig attribute) (nirs4all.synthesis.benchmarks.BenchmarkDatasetInfo attribute) (nirs4all.synthesis.environmental.TemperatureEffectParams attribute) reference_ (nirs4all.operators.models.sklearn.aom_fast.EMSCBase attribute) reference_aw (nirs4all.synthesis.environmental.MoistureConfig attribute) reference_material (nirs4all.synthesis.measurement_modes.ReflectanceConfig attribute) reference_reflectance (nirs4all.synthesis.measurement_modes.ReflectanceConfig attribute) reference_temperature (nirs4all.synthesis.environmental.TemperatureConfig attribute) reference_type (nirs4all.synthesis.measurement_modes.TransmittanceConfig attribute) references (nirs4all.synthesis.components.SpectralComponent attribute) (nirs4all.synthesis.products.ProductTemplate attribute) REFIT (nirs4all.data.reduction.PredictionScope attribute) refit_best() (nirs4all.pipeline.dagml.pipeline_objective.PipelineObjective method) REFIT_CONTEXT_STACKING (in module nirs4all.pipeline.storage.store_schema) REFIT_CONTEXT_STANDALONE (in module nirs4all.pipeline.storage.store_schema) refit_estimator (nirs4all.pipeline.dagml.tuning_adapters.ObjectiveTuningRunResult attribute) REFIT_FOLD_IDS (in module nirs4all.data.reduction) refit_inner_fold_set (nirs4all.pipeline.dagml.native_pls_fold_hpo.NativePlsFoldPlan attribute) refit_mode (nirs4all.pipeline.execution.refit.config_extractor.RefitCriterion attribute) (nirs4all.pipeline.execution.refit.config_extractor.RefitSlotPlan attribute) refit_params (nirs4all.pipeline.dagml.native_pls_phase_controls.NativePlsPhaseControls attribute) RefitCriterion (class in nirs4all.pipeline.execution.refit.config_extractor) RefitSlotPlan (class in nirs4all.pipeline.execution.refit.config_extractor) RefittedN4MPipeline (class in nirs4all.pipeline.portable_n4m_trained) REFLECTANCE (nirs4all.data.schema.config.SignalTypeEnum attribute) (nirs4all.synthesis.fitter.MeasurementModeInference attribute) REFLECTANCE_PERCENT (nirs4all.data.schema.config.SignalTypeEnum attribute) reflectance_to_absorbance() (in module nirs4all.operators.transforms.nirs) ReflectanceConfig (class in nirs4all.synthesis.measurement_modes) ReflectanceToAbsorbance (class in nirs4all.operators.transforms.nirs) reflector_reflectance (nirs4all.synthesis.measurement_modes.TransflectanceConfig attribute) reflector_type (nirs4all.synthesis.measurement_modes.TransflectanceConfig attribute) refresh_rate (nirs4all.core.logging.progress.ProgressConfig attribute) regime_method (nirs4all.synthesis.builder.BuilderState attribute) regime_overlap (nirs4all.synthesis.builder.BuilderState attribute) region_specific (nirs4all.synthesis.environmental.TemperatureConfig attribute) register_builtin_presets() (in module nirs4all.pipeline.config.generator) register_preset() (in module nirs4all.pipeline.config.generator) register_strategy() (in module nirs4all.pipeline.config.generator) REGRESSION (nirs4all.controllers.models.stacking.classification.StackingTaskType attribute) (nirs4all.data.reduction.TaskCompatibility attribute) (nirs4all.data.schema.config.TaskType attribute) regression() (in module nirs4all.api.generate) regressor() (in module nirs4all.operators.models.tensorflow.legacy.inception_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.resnet_v2_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn) reject_native_training_param_overrides() (in module nirs4all.pipeline.dagml.finetune_lowering) relation_replay_manifest (nirs4all.pipeline.bundle.loader.BundleMetadata attribute) RELATION_TABLE_COLUMNS (in module nirs4all.data.relations) RelationConfig (class in nirs4all.data.relations) RelationExplainLineage (class in nirs4all.pipeline.explain_lineage) RelationReplayManifest (class in nirs4all.data.relation_replay_manifest) RelationReplayManifestError relations (nirs4all.pipeline.dagml.estimator.DagMLTrainingExecution attribute) (nirs4all.pipeline.dagml.terminal_predict_lowerer.StrictMethodsTerminalPredictionExecution attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLPreparedTrainingContracts attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingRequestContracts attribute) RelationValidationError release() (nirs4all.pipeline.execution.step_cache.CachedStepState method) remove() (nirs4all.pipeline.storage.artifacts.artifact_loader.LRUCache method) remove_artifact() (nirs4all.pipeline.storage.artifacts.artifact_registry.DependencyGraph method) REMOVE_FEATURE (nirs4all.data.schema.config.NAPolicy attribute) REMOVE_SAMPLE (nirs4all.data.schema.config.NAPolicy attribute) removed (nirs4all.data.serialization.serializer.ConfigDiff attribute) render() (nirs4all.visualization.charts.base.BaseChart method) (nirs4all.visualization.charts.candlestick.CandlestickChart method) (nirs4all.visualization.charts.confusion_matrix.ConfusionMatrixChart method) (nirs4all.visualization.charts.heatmap.HeatmapChart method) (nirs4all.visualization.charts.histogram.ScoreHistogramChart method) (nirs4all.visualization.charts.top_k_comparison.TopKComparisonChart method) (nirs4all.visualization.pipeline_diagram.PipelineDiagram method) render_run_charts() (in module nirs4all.pipeline.dagml.chart_projection) rep_col (nirs4all.data.relations.SourceRepetitionSpec attribute) rep_id (nirs4all.data.reduction.PredictionUnitId attribute) (nirs4all.data.relations.ObservationRecord attribute) rep_ids (nirs4all.data.relations.SourceObservations attribute) rep_ids_by_source (nirs4all.data.relations.ComboRecord attribute) rep_order (nirs4all.data.relations.RepetitionSpec attribute) (nirs4all.data.relations.SampleRelationPlan attribute) repetition_ids (nirs4all.data.multimodal.MultimodalSpectroDataset property) REPETITION_MECHANISMS (in module nirs4all.data.relations) repetition_variance() (in module nirs4all.analysis.playground_distances) RepetitionConfig (class in nirs4all.operators.data.repetition) RepetitionGroups (class in nirs4all.data.repetition_detection) RepetitionSpec (class in nirs4all.data.relations) RepFusionConfig (class in nirs4all.operators.data.rep_fusion) RepFusionController (class in nirs4all.controllers.data.rep_fusion) REPLACE (nirs4all.data.schema.config.NAPolicy attribute) replace_processing (nirs4all.pipeline.config.context.StepMetadata attribute) ReplaceMissingValues (class in nirs4all.pipeline.dagml.na_policy) replay (nirs4all.pipeline.execution.preprocessing.FoldPreprocessing attribute) replay_chain() (in module nirs4all.pipeline.storage.chain_replay) replay_loaded_methods_portable_refit_package_v3() (nirs4all.pipeline.dagml.native_client.DagMLNativeClient method) replay_loaded_methods_predictor_package() (nirs4all.pipeline.dagml.native_client.DagMLNativeClient method) replay_loaded_predictor_package() (nirs4all.pipeline.dagml.native_client.DagMLNativeClient method)

replay_materialization() (in module nirs4all.data.raw_multisource) replay_methods_archive_v2() (in module nirs4all.pipeline.dagml.native_archive_replay) replay_portable_predictor_archive_v2() (in module nirs4all.api.portable_archive) replay_torch_topology() (in module nirs4all.pipeline.dagml.torch_topology_replay) replay_with_identity() (nirs4all.pipeline.dagml.estimator.DagMLPipelineEstimator method) RepOrder (class in nirs4all.data.relations) REPORT (nirs4all.core.logging.events.EventType attribute) report_model_training_controls() (in module nirs4all.pipeline.dagml.training_controls) reports (nirs4all.pipeline.dagml.rt.RtResult attribute) representation (nirs4all.data.raw_multisource.AlignedMaterialization attribute) (nirs4all.data.raw_multisource.RepresentationPlan attribute) (nirs4all.operators.data.rep_fusion.RepFusionConfig property) representation_plan (nirs4all.data.raw_multisource.AlignedMaterialization attribute) (nirs4all.data.relation_replay_manifest.RelationReplayManifest attribute) RepresentationPlan (class in nirs4all.data.raw_multisource) RepresentationStage (class in nirs4all.data.raw_multisource) RepresentationUnitLevel (class in nirs4all.data.raw_multisource) RepToPPController (class in nirs4all.controllers.data.repetition) RepToSourcesController (class in nirs4all.controllers.data.repetition) request (nirs4all.pipeline.dagml.estimator.DagMLReplayExecution attribute) (nirs4all.pipeline.dagml.estimator.DagMLTrainingExecution attribute) (nirs4all.pipeline.dagml.terminal_predict_lowerer.StrictMethodsTerminalPredictionExecution attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLPreparedTrainingContracts attribute) request_id (nirs4all.pipeline.dagml.raw_replay_lowerer.RawArrayMethodsPortableRefitReplayCompiler attribute) (nirs4all.pipeline.dagml.raw_training_lowerer.RawArrayDagMLTrainingCompiler attribute) request_spec (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingRequestContracts attribute) requested_engine (nirs4all.api.advanced_capabilities.AdvancedApiCapabilityDecision attribute) require() (nirs4all.api.advanced_capabilities.AdvancedApiCapabilityDecision method) require_legacy_engine() (in module nirs4all.pipeline.engine) require_sample_weight_support() (in module nirs4all.pipeline.dagml.experimental_units) require_weighted_context() (in module nirs4all.pipeline.dagml.experimental_units) required (nirs4all.pipeline.config.portable_method_specs.PortableMethodSpec attribute) requires_wrapper (nirs4all.controllers.splitters.split.ResolvedSplitGroups property) RESAMPLE_EQUALIZED (nirs4all.data.fit_influence.FitInfluenceMode attribute) ResamplerController (class in nirs4all.controllers.data.resampler) ResampleTransformer (class in nirs4all.operators.transforms.features) reset_ephemeral_flags() (nirs4all.pipeline.config.context.StepMetadata method) reset_execution_resources() (in module nirs4all.pipeline.dagml.resources) reset_logging() (in module nirs4all.core.logging.config) reset_registry() (in module nirs4all.controllers.registry) residual_block() (in module nirs4all.operators.models.tensorflow.legacy.resnet_v2_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn) residual_block_bottleneck() (in module nirs4all.operators.models.tensorflow.legacy.resnet_v2_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn) residual_group() (in module nirs4all.operators.models.tensorflow.legacy.resnet_v2_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn) residual_group_bottleneck() (in module nirs4all.operators.models.tensorflow.legacy.resnet_v2_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn) residual_operator() (in module nirs4all.pipeline.dagml.residual_run) ResidualImplicitCvWarning ResidualModelController (class in nirs4all.controllers.models.residual_model) residuals (nirs4all.synthesis.fitter.ComponentFitResult attribute) (nirs4all.synthesis.fitter.OptimizedFitResult attribute) (nirs4all.synthesis.fitter.RealBandFitResult attribute) ResNetV2_model() (in module nirs4all.operators.models.tensorflow.generic) resolve_column() (nirs4all.operators.data.repetition.RepetitionConfig method) resolve_dependencies() (nirs4all.pipeline.storage.artifacts.artifact_registry.DependencyGraph method) resolve_methods_library_path() (in module nirs4all.pipeline.dagml.methods_runtime) resolve_preset() (in module nirs4all.pipeline.config.generator) resolve_presets_recursive() (in module nirs4all.pipeline.config.generator) resolve_refit_params() (in module nirs4all.pipeline.config.refit_params) resolve_task_type_sql() (in module nirs4all.core.task_type) ResolvedSplitGroups (class in nirs4all.controllers.splitters.split) response (nirs4all.synthesis.detectors.DetectorSpectralResponse attribute) result (nirs4all.api.native_session.NativeMethodsSession property) result_fingerprint (nirs4all.pipeline.dagml.conformal_store.ConformalStoreManifest attribute) result_lane_record() (in module nirs4all.pipeline.dagml.methods_lane) resume (nirs4all.api.tuning.NativeTuning attribute) resume_native_tuning() (in module nirs4all.api.public_tuning) retrain() (in module nirs4all.api.retrain) (nirs4all.api.native_session.NativeMethodsSession method) (nirs4all.pipeline.portable_n4m_trained.PortableN4MTrainedPipeline method) (nirs4all.pipeline.retrainer.Retrainer method) retrain_capability_ledger() (in module nirs4all.api.retrain_capabilities) retrain_lineage (nirs4all.pipeline.bundle.loader.BundleMetadata attribute) retrain_preflight() (in module nirs4all.api.retrain) RetrainArtifactProvider (class in nirs4all.pipeline.retrainer) RetrainConfig (class in nirs4all.pipeline.retrainer) Retrainer (class in nirs4all.pipeline.retrainer) RetrainMode (class in nirs4all.pipeline.retrainer) REUSE_OOF (nirs4all.operators.data.merge.StackingSelectionProtocol attribute) right_edge_intensity (nirs4all.synthesis.fitter.EdgeArtifactInference attribute) right_edge_noise_std (nirs4all.synthesis.fitter.SpectralProperties attribute) right_edge_slope (nirs4all.synthesis.fitter.SpectralProperties attribute) rmse (nirs4all.api.robustness.RobustnessMetricSet attribute) RMSE (nirs4all.operators.data.merge.DisjointSelectionCriterion attribute) rmse (nirs4all.synthesis.fitter.ComponentFitResult attribute) (nirs4all.synthesis.fitter.OptimizedFitResult attribute) (nirs4all.synthesis.fitter.RealBandFitResult attribute) ROBUST (nirs4all.data.reduction.ReductionMethod attribute) robustness() (in module nirs4all.api.robustness) (nirs4all.api.tuning.TunedSingleEstimatorConformalResult method) (nirs4all.pipeline.dagml.conformal_contracts.CalibratedRunResult method) robustness_axes() (in module nirs4all.pipeline.analysis.model_diagnostics) robustness_report_export() (in module nirs4all.cli.commands.robustness_report) robustness_summary_schema_export() (in module nirs4all.cli.commands.robustness_summary_schema) robustness_summary_schema_json() (in module nirs4all.api.robustness) RobustnessMetricSet (class in nirs4all.api.robustness) RobustnessReport (class in nirs4all.api.robustness) RobustnessScenarioResult (class in nirs4all.api.robustness) RobustnessScenarioSpec (class in nirs4all.api.robustness) RobustnessSliceResult (class in nirs4all.api.robustness) RobustPLS (class in nirs4all.operators.models.sklearn.robust_pls) role (nirs4all.data.reduction.ReductionPlan attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationCohortRow attribute) roll_off_rate (nirs4all.operators.augmentation.edge_artifacts.DetectorModel attribute) RollingBall (class in nirs4all.operators.transforms.nirs) Rotate_Translate (class in nirs4all.operators.augmentation.random) route_operator() (in module nirs4all.pipeline.dagml.operator_routing) ROW (nirs4all.data.reduction.EvaluationScope attribute) (nirs4all.data.reduction.PredictionLevel attribute) (nirs4all.data.relations.UnitLevel attribute) row_id (nirs4all.data.relations.ObservationRecord attribute) row_index (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationCohortRow attribute) rows (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationCohortManifest attribute) RtResult (class in nirs4all.pipeline.dagml.rt) RtRunRequest (class in nirs4all.pipeline.dagml.rt) Run (class in nirs4all.pipeline.run) run (nirs4all.api.tuning.TunedSingleEstimatorConformalResult attribute) RUN (nirs4all.pipeline.resolver.SourceType attribute) run() (in module nirs4all.api.run) (nirs4all.api.native_session.NativeMethodsSession method) run_by_source_auto_full_train() (in module nirs4all.pipeline.dagml.full_train) run_cv_refit_bundle() (in module nirs4all.pipeline.dagml.cli_runner) (in module nirs4all.pipeline.dagml.in_process_runner) run_cv_refit_bundle_router() (in module nirs4all.pipeline.dagml.in_process_runner) run_cv_refit_lane() (in module nirs4all.pipeline.dagml.methods_lane) run_dagml_public() (in module nirs4all.pipeline.dagml.public_batch) run_fixed_classifier() (in module nirs4all.pipeline.dagml.structural_classification) run_footer() (nirs4all.core.logging.config.Nirs4allLogger method) run_full_train() (in module nirs4all.pipeline.dagml.full_train) run_generated_hpo_subprocess() (in module nirs4all.pipeline.dagml.generated_hpo_subprocess) run_generated_subprocess() (in module nirs4all.pipeline.dagml.generated_subprocess) run_header() (nirs4all.core.logging.config.Nirs4allLogger method) run_host_hpo_search() (in module nirs4all.api.dagml_training) run_id (nirs4all.api.inspector_views.BranchComparisonRequest attribute) (nirs4all.api.inspector_views.CandlestickRequest attribute) (nirs4all.api.inspector_views.HeatmapRequest attribute) (nirs4all.api.inspector_views.HyperparameterRequest attribute) (nirs4all.api.inspector_views.PreprocessingImpactRequest attribute) (nirs4all.core.logging.context.RunState attribute) (nirs4all.core.logging.events.LogEvent attribute) (nirs4all.pipeline.dagml.cv_weight_transfer.CVWeightTransferStore property) (nirs4all.pipeline.dagml.cv_weight_transfer.TransferIdentity attribute) (nirs4all.pipeline.dagml.estimator.DagMLReplayExecution attribute) (nirs4all.pipeline.dagml.estimator.DagMLTrainingExecution attribute) (nirs4all.pipeline.dagml.raw_replay_lowerer.RawArrayMethodsPortableRefitReplayCompiler attribute) (nirs4all.pipeline.dagml.raw_training_lowerer.RawArrayDagMLTrainingCompiler attribute) (nirs4all.pipeline.dagml.rt.RtResult attribute) (nirs4all.pipeline.dagml.terminal_predict_lowerer.StrictMethodsTerminalPredictionExecution attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLPreparedTrainingContracts attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingRequestContracts attribute) run_jsonl_loop() (in module nirs4all.pipeline.dagml.process_adapter) run_level() (nirs4all.core.logging.progress.MultiLevelProgress method) run_meta_model_node() (in module nirs4all.pipeline.dagml.node_runner) run_methods_multimodal() (in module nirs4all.pipeline.dagml.methods_multimodal) run_model_node() (in module nirs4all.pipeline.dagml.node_runner) run_multimodal_tuning() (in module nirs4all.pipeline.dagml.multimodal_tuning) run_name (nirs4all.core.logging.context.RunState attribute) run_native_methods() (in module nirs4all.api.native_training) run_native_methods_archive() (in module nirs4all.api.native_archive_training) run_pipeline_objective_tuning() (in module nirs4all.pipeline.dagml.tuning_adapters) run_refit_phase_cli() (in module nirs4all.pipeline.dagml.cli_runner) run_residual_model() (in module nirs4all.pipeline.dagml.residual_run) run_scoped_finetune() (in module nirs4all.pipeline.dagml.host_finetune) run_single_estimator_tuning_to_run_result() (in module nirs4all.pipeline.dagml.pipeline_objective_compiler) run_structural_tuning() (in module nirs4all.pipeline.dagml.structural_tuning) run_tuning() (nirs4all.pipeline.dagml.pipeline_objective_compiler.CompiledPipelineObjective method) run_via_dagml() (in module nirs4all.pipeline.dagml.run_backend) RunCancelledError RunConfig (class in nirs4all.pipeline.run) RUNNING (nirs4all.pipeline.run.RunStatus attribute) RunState (class in nirs4all.core.logging.context) RunStatus (class in nirs4all.pipeline.run) RunSummary (class in nirs4all.pipeline.run) RUNTIME (nirs4all.data.schema.validation.error_codes.ErrorCategory attribute)

S

S (nirs4all.operators.models.sklearn.aom_fast.LowRankBase attribute) SAMPLE (nirs4all.data.raw_multisource.RepresentationUnitLevel attribute) (nirs4all.data.reduction.EvaluationScope attribute) (nirs4all.data.reduction.PredictionLevel attribute) (nirs4all.operators.data.merge.MetaRowDomain attribute) sample() (nirs4all.synthesis.domains.ConcentrationPrior method) (nirs4all.synthesis.prior.PriorSampler method) (nirs4all.synthesis.scattering.ParticleSizeDistribution method) SAMPLE_AGGREGATE (nirs4all.data.raw_multisource.RepresentationStage attribute) sample_batch() (nirs4all.synthesis.prior.PriorSampler method) sample_components() (nirs4all.synthesis.domains.DomainConfig method) (nirs4all.synthesis.prior.PriorSampler method) sample_concentrations() (nirs4all.synthesis.domains.DomainConfig method) sample_domain() (nirs4all.synthesis.prior.PriorSampler method) sample_for_domain() (nirs4all.synthesis.prior.PriorSampler method) sample_for_instrument() (nirs4all.synthesis.prior.PriorSampler method) sample_id (nirs4all.data.relations.RepetitionSpec attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationCohortRow attribute) (nirs4all.pipeline.dagml.identity.SampleIdentity attribute) sample_id_column (nirs4all.api.calibrate.ConformalCalibrationData attribute) (nirs4all.api.tuning.TuningScoreData attribute) (nirs4all.api.tuning.TuningWinner attribute) sample_id_prefix (nirs4all.synthesis.builder.BuilderState attribute) sample_ids (nirs4all.api.calibrate.ConformalCalibrationData attribute) (nirs4all.api.tuning.TuningConformalScoreCalibration attribute) (nirs4all.api.tuning.TuningScoreData attribute) (nirs4all.api.tuning.TuningWinner attribute) (nirs4all.controllers.data.merge.DisjointBranchInfo attribute) (nirs4all.data.raw_multisource.AlignedMaterialization attribute) (nirs4all.data.relations.SourceObservations attribute) (nirs4all.pipeline.dagml.conformal_contracts.CalibratedRunResult attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationCohortManifest property) (nirs4all.pipeline.dagml.estimator.DagMLFitIdentityFrame attribute) (nirs4all.pipeline.dagml.estimator.DagMLPredictIdentityFrame attribute) (nirs4all.pipeline.dagml.fit_identity.DagMLCalibrationIdentityFrame attribute) (nirs4all.pipeline.dagml.native_archive_replay.NativeArchivePrediction attribute) (nirs4all.pipeline.dagml.pipeline_objective_compiler.CompiledPipelineObjective attribute) (nirs4all.synthesis.benchmarks.LoadedBenchmarkDataset attribute) sample_independent() (nirs4all.optimization.optuna.BinarySearchSampler method) sample_indices (nirs4all.api.inspector_views.ScatterPoint attribute) (nirs4all.controllers.models.stacking.branch_validator.BranchInfo attribute) sample_influence_weight (nirs4all.data.relations.ObservationRecord attribute) sample_instrument() (nirs4all.synthesis.prior.PriorSampler method) sample_instrument_category() (nirs4all.synthesis.prior.PriorSampler method) sample_int (nirs4all.pipeline.dagml.identity.SampleIdentity attribute) sample_matrix_type() (nirs4all.synthesis.prior.PriorSampler method) sample_measurement_mode() (nirs4all.synthesis.prior.PriorSampler method) sample_n_samples() (nirs4all.synthesis.prior.PriorSampler method) sample_noise_level() (nirs4all.synthesis.prior.PriorSampler method) sample_particle_size() (nirs4all.synthesis.prior.PriorSampler method) SAMPLE_PARTITIONER (nirs4all.operators.data.merge.BranchType attribute) sample_presentation (nirs4all.synthesis.measurement_modes.ReflectanceConfig attribute) sample_prior() (in module nirs4all.synthesis.prior) sample_prior_batch() (in module nirs4all.synthesis.prior) sample_refractive_index (nirs4all.synthesis.measurement_modes.ATRConfig attribute) sample_relations() (in module nirs4all.pipeline.dagml.envelope) sample_relative() (nirs4all.optimization.optuna.BinarySearchSampler method) sample_target_config() (nirs4all.synthesis.prior.PriorSampler method) sample_temperature (nirs4all.synthesis.environmental.TemperatureConfig attribute) sample_temperature() (nirs4all.synthesis.prior.PriorSampler method) sample_to_sample_offset_std (nirs4all.synthesis.fitter.SpectralProperties attribute) sample_to_sample_slope_std (nirs4all.synthesis.fitter.SpectralProperties attribute) sample_to_sample_variation (nirs4all.synthesis.measurement_modes.ScatteringConfig attribute) sample_type (nirs4all.synthesis.benchmarks.BenchmarkDatasetInfo attribute) sample_variation (nirs4all.synthesis.scattering.ScatteringCoefficientConfig attribute) sample_with_seed() (in module nirs4all.pipeline.config.generator) SampleAugmentationController (class in nirs4all.controllers.data.sample_augmentation) SampleIdentity (class in nirs4all.pipeline.dagml.identity) sampler (nirs4all.api.tuning.NativeTuning attribute) SampleRelationPlan (class in nirs4all.data.relations) SampleStrategy (class in nirs4all.pipeline.config.generator) sanitize_dict() (in module nirs4all.api.inspector_json) sanitize_float() (in module nirs4all.api.inspector_json) satisfied_by_repetition_only (nirs4all.controllers.splitters.split.ResolvedSplitGroups attribute) save() (nirs4all.api.native_session.NativeMethodsSession method) (nirs4all.data.predictions.PredictionResultsList method) (nirs4all.data.serialization.serializer.ConfigSerializer method) (nirs4all.synthesis.fitter.FittedParameters method) save_artifact() (nirs4all.pipeline.storage.store_protocol.WorkspaceStoreProtocol method) save_artifacts() (nirs4all.api.robustness.RobustnessReport method) save_batch() (nirs4all.pipeline.storage.array_store.ArrayStore method) save_chain() (nirs4all.pipeline.storage.store_protocol.WorkspaceStoreProtocol method) save_conformal_result_store() (in module nirs4all.pipeline.dagml.conformal_store) save_experiment() (in module nirs4all.api.public_results) save_html() (nirs4all.api.robustness.RobustnessReport method) save_json() (nirs4all.api.robustness.RobustnessReport method) (nirs4all.pipeline.dagml.conformal_contracts.CalibratedRunResult method) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationArtifact method) save_markdown() (nirs4all.api.robustness.RobustnessReport method) save_model() (nirs4all.controllers.models.autogluon_model.AutoGluonModelController method) save_models (nirs4all.pipeline.run.RunConfig attribute) save_package() (nirs4all.api.native_refit_result.NativeMethodsRefitResult method) save_parquet() (nirs4all.api.robustness.RobustnessReport method) save_prediction() (nirs4all.pipeline.storage.store_protocol.WorkspaceStoreProtocol method) save_predictions (nirs4all.pipeline.run.RunConfig attribute) save_results() (nirs4all.visualization.analysis.shap.ShapAnalyzer method) save_summary() (nirs4all.api.robustness.RobustnessReport method) save_template() (nirs4all.pipeline.storage.library.PipelineLibrary method) save_to_csv() (nirs4all.data.predictions.PredictionResult method) save_workspace_calibrated_result() (in module nirs4all.api.calibrate) save_workspace_predict_result() (in module nirs4all.api.result) save_workspace_robustness_report() (in module nirs4all.api.robustness) save_workspace_tuning_result() (in module nirs4all.api.tuning) savgol() (in module nirs4all.operators.transforms.nirs) savgol_only() (in module nirs4all.operators.transforms.presets) SavitzkyGolayOperator (class in nirs4all.operators.models.sklearn.aom_pls) scatter_alpha_std (nirs4all.synthesis.fitter.FittedParameters attribute) scatter_baseline_curvature (nirs4all.synthesis.fitter.SpectralProperties attribute) scatter_baseline_slope (nirs4all.synthesis.fitter.SpectralProperties attribute) scatter_beta_std (nirs4all.synthesis.fitter.FittedParameters attribute) scattering_effects_config (nirs4all.synthesis.builder.BuilderState attribute) scattering_inference (nirs4all.synthesis.fitter.FittedParameters attribute) ScatteringCoefficientConfig (class in nirs4all.synthesis.scattering) ScatteringConfig (class in nirs4all.synthesis.measurement_modes) ScatteringInference (class in nirs4all.synthesis.fitter) ScatteringModel (class in nirs4all.synthesis.scattering) ScatterPoint (class in nirs4all.api.inspector_views) ScatterRequest (class in nirs4all.api.inspector_views) ScatterResponse (class in nirs4all.api.inspector_views) ScatterSimulationMSC (class in nirs4all.operators.augmentation.spectral) scenario (nirs4all.api.robustness.RobustnessScenarioResult attribute) scenarios (nirs4all.api.robustness.RobustnessReport attribute) SCHEMA (nirs4all.data.schema.validation.error_codes.ErrorCategory attribute) schema_id (nirs4all.pipeline.dagml.conformal_store.ConformalStoreManifest attribute) schema_version (nirs4all.api.native_witness.NativeMethodsExecutionClaim attribute) (nirs4all.api.native_witness.NativeMethodsTerminalExecutionClaim attribute) (nirs4all.pipeline.dagml.rt.RtResult attribute) scoped_inner_cv() (in module nirs4all.pipeline.dagml.host_finetune) score (nirs4all.api.inspector_views.FoldScoreEntry attribute) (nirs4all.api.inspector_views.HyperparameterPoint attribute) (nirs4all.api.inspector_views.ScatterPoint attribute) (nirs4all.api.result.LazyModelRefitResult property) (nirs4all.api.tuning.TuningWinner attribute) (nirs4all.controllers.models.components.prediction_assembler.PartitionPrediction attribute) SCORE (nirs4all.data.reduction.ReductionRole attribute) score (nirs4all.operators.models.sklearn.aom_fast.ScreeningCandidate attribute) (nirs4all.pipeline.dagml.pipeline_objective.PipelineObjectiveResult attribute) score() (nirs4all.operators.models.sklearn.aom_ridge.AOMLocalRidge method) (nirs4all.operators.models.sklearn.aom_ridge.AOMMultiBranchMKL method) (nirs4all.operators.models.sklearn.aom_ridge.AOMMultiKernelRidge method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeAutoSelector method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeBlender method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeClassifier method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgePLS method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgePLSCV method) (nirs4all.operators.models.sklearn.aom_ridge.AOMRidgeRegressor method) (nirs4all.sklearn.classifier.NIRSPipelineClassifier method) score_column (nirs4all.api.inspector_views.BiasVarianceRequest attribute) (nirs4all.api.inspector_views.BiasVarianceResponse attribute) (nirs4all.api.inspector_views.BranchComparisonRequest attribute) (nirs4all.api.inspector_views.BranchComparisonResponse attribute) (nirs4all.api.inspector_views.CandlestickRequest attribute) (nirs4all.api.inspector_views.CandlestickResponse attribute) (nirs4all.api.inspector_views.FoldStabilityRequest attribute) (nirs4all.api.inspector_views.FoldStabilityResponse attribute) (nirs4all.api.inspector_views.HeatmapRequest attribute) (nirs4all.api.inspector_views.HeatmapResponse attribute) (nirs4all.api.inspector_views.HistogramResponse attribute) (nirs4all.api.inspector_views.HyperparameterRequest attribute) (nirs4all.api.inspector_views.HyperparameterResponse attribute) (nirs4all.api.inspector_views.PreprocessingImpactRequest attribute) (nirs4all.api.inspector_views.PreprocessingImpactResponse attribute) (nirs4all.api.inspector_views.RankingsResponse attribute) score_data (nirs4all.api.tuning.NativeTuning attribute) score_groups (nirs4all.api.tuning.TuningScoreData attribute) score_means (nirs4all.synthesis.fitter.PCAVarianceParams attribute) score_metadata (nirs4all.api.tuning.TuningScoreData attribute) score_metric (nirs4all.api.tuning.TuningScoreData attribute) score_ref (nirs4all.api.inspector_views.BiasVarianceRequest attribute) (nirs4all.api.inspector_views.FoldStabilityRequest attribute) score_sample_ids (nirs4all.api.tuning.TuningScoreData attribute) score_stds (nirs4all.synthesis.fitter.PCAVarianceParams attribute) ScoreHistogramChart (class in nirs4all.visualization.charts.histogram) ScoreNormalizer (class in nirs4all.visualization.chart_utils.normalizer) SCORER_ONLY (nirs4all.data.fit_influence.FitInfluenceMode attribute) ScoreRef (class in nirs4all.api.inspector_views) scores (nirs4all.pipeline.dagml.conformal_contracts.SplitConformalCalibrator attribute) ScreeningCandidate (class in nirs4all.operators.models.sklearn.aom_fast) SE_Block() (in module nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn) search_axes (nirs4all.pipeline.dagml.native_pls_phase_controls.NativePlsPhaseControls attribute) search_components() (in module nirs4all.synthesis.components) search_space (nirs4all.pipeline.dagml.pipeline_objective_compiler.CompiledPipelineObjective attribute) SearchSpaceParameter (class in nirs4all.api.tuning) SECOND_DERIVATIVE (nirs4all.synthesis.fitter.PreprocessingType attribute) second_derivative() (in module nirs4all.operators.transforms.nirs) seed (nirs4all.api.tuning.NativeTuning attribute) (nirs4all.pipeline.dagml.raw_training_lowerer.RawArrayDagMLTrainingCompiler attribute) segment_length() (in module nirs4all.operators.augmentation.splines) segment_pt_coord() (in module nirs4all.operators.augmentation.splines) segments (nirs4all.api.tuning.ParameterPatch attribute) (nirs4all.api.tuning.SearchSpaceParameter attribute) select() (nirs4all.operators.models.selection.DiversitySelector method) (nirs4all.operators.models.selection.TopKByMetricSelector method) select_best_per_model() (in module nirs4all.pipeline.execution.refit.model_selector) select_by (nirs4all.controllers.data.merge.DisjointMergeMetadata attribute) (nirs4all.controllers.data.merge.DisjointMergeResult attribute) (nirs4all.operators.data.merge.MergeConfig attribute) select_models() (nirs4all.controllers.data.merge.ModelSelector method) select_models_global() (nirs4all.controllers.data.merge.ModelSelector method) select_portable_output() (nirs4all.pipeline.dagml.estimator.DagMLPipelineEstimator method) (nirs4all.pipeline.dagml.native_client.DagMLNativeClient method) select_run_engine() (in module nirs4all.api.run_selection) select_with_views() (nirs4all.pipeline.dagml.auto_transfer.DagMLAutoTransferPreprocessor method) selected_models (nirs4all.controllers.data.merge.DisjointBranchInfo attribute) selected_pipeline() (nirs4all.pipeline.dagml.late_tuning.LateFusionTuningRecipe method) selected_torch_features() (in module nirs4all.pipeline.dagml.torch_topology_replay) selection (nirs4all.pipeline.dagml.rt.RtResult attribute) selection_level (nirs4all.pipeline.execution.refit.config_extractor.RefitCriterion attribute) (nirs4all.pipeline.execution.refit.config_extractor.RefitSlotPlan attribute) selection_metric (nirs4all.pipeline.dagml.raw_training_lowerer.RawArrayDagMLTrainingCompiler attribute) (nirs4all.pipeline.execution.refit.config_extractor.RefitSlotPlan attribute) selection_objective (nirs4all.pipeline.dagml.raw_training_lowerer.RawArrayDagMLTrainingCompiler attribute) selection_protocol (nirs4all.operators.data.merge.StackingFitContract attribute) SelectionProtocol (class in nirs4all.operators.data.merge) selector (nirs4all.api.calibrate.ConformalCalibrationData attribute) (nirs4all.api.tuning.TuningScoreData attribute) (nirs4all.api.tuning.TuningWinner attribute) senseen_origin() (in module nirs4all.operators.models.tensorflow.generic) senseen_set() (in module nirs4all.operators.transforms.presets) SeparableConv1D (class in nirs4all.operators.models.jax.nicon) (class in nirs4all.operators.models.pytorch.nicon) separation (nirs4all.synthesis.targets.ClassSeparationConfig attribute) separation_replay_manifest() (in module nirs4all.pipeline.dagml.native_results) separator (nirs4all.synthesis.exporter.ExportConfig attribute) SequenceSummary (class in nirs4all.operators.transforms.sequence) sequential_model_pipelines() (in module nirs4all.pipeline.dagml.sequential_models) SEResNet_model() (in module nirs4all.operators.models.tensorflow.generic) SerializationFormat (class in nirs4all.data.serialization.serializer) serialize_component() (in module nirs4all.pipeline.config.component_serialization) serialize_config() (in module nirs4all.data.serialization.serializer) SERIALIZED (nirs4all.pipeline.steps.parser.StepType attribute) session() (in module nirs4all.api.session) SessionClosedError set() (nirs4all.data.performance.cache.DataCache method) set_decision_function_request() (nirs4all.operators.models.multimodal.MultimodalClassifier method) set_description() (nirs4all.core.logging.progress.ProgressBar method) set_fit_request() (nirs4all.operators.models.multimodal.MultimodalClassifier method) (nirs4all.operators.models.multimodal.MultimodalRegressor method) (nirs4all.operators.models.sklearn.aom_fast.HardAOMChainPLSRidge method) (nirs4all.operators.models.sklearn.aom_fast.SoftAOMChainPLSRidge method) (nirs4all.operators.models.sklearn.aom_fast.SparseMultiKernelRidge method) (nirs4all.operators.models.sklearn.aom_pls_aomlib.AOMPLSAomlibRegressor method) (nirs4all.operators.transforms.concat.FeatureConcat method) (nirs4all.operators.transforms.orthogonalization.EPO method) (nirs4all.pipeline.dagml.estimator.DagMLPipelineEstimator method) set_input_channels() (nirs4all.pipeline.dagml.auto_transfer.DagMLAutoTransferPreprocessor method) set_model() (nirs4all.pipeline.retrainer.ExtractedPipeline method) set_params() (nirs4all.operators.models.base.BaseModelOperator method) (nirs4all.operators.models.sklearn.aom_pls_aomlib.AOMPLSAomlibRegressor method) (nirs4all.operators.models.sklearn.dipls.DiPLS method) (nirs4all.operators.models.sklearn.fckpls.FCKPLS method) (nirs4all.operators.models.sklearn.ikpls.IKPLS method) (nirs4all.operators.models.sklearn.ipls.IntervalPLS method) (nirs4all.operators.models.sklearn.kopls.KOPLS method) (nirs4all.operators.models.sklearn.lwpls.LWPLS method) (nirs4all.operators.models.sklearn.mbpls.MBPLS method) (nirs4all.operators.models.sklearn.oklmpls.OKLMPLS method) (nirs4all.operators.models.sklearn.opls.OPLS method) (nirs4all.operators.models.sklearn.oplsda.OPLSDA method) (nirs4all.operators.models.sklearn.recursive_pls.RecursivePLS method) (nirs4all.operators.models.sklearn.robust_pls.RobustPLS method) (nirs4all.operators.models.sklearn.simpls.SIMPLS method) (nirs4all.operators.models.sklearn.sparsepls.SparsePLS method) (nirs4all.operators.transforms.nirs.PyBaselineCorrection method) (nirs4all.operators.transforms.targets.RangeDiscretizer method) (nirs4all.pipeline.dagml.framework_estimator.DagMLFrameworkEstimator method) (nirs4all.pipeline.dagml.run_paths.DuplicationBranchMergeTransformer method) set_postfix() (nirs4all.core.logging.progress.ProgressBar method) set_predict_proba_request() (nirs4all.operators.models.multimodal.MultimodalClassifier method) set_predict_request() (nirs4all.operators.models.multimodal.MultimodalClassifier method) (nirs4all.operators.models.multimodal.MultimodalRegressor method) (nirs4all.operators.models.sklearn.ikpls.IKPLS method) (nirs4all.operators.models.sklearn.lwpls.LWPLS method) (nirs4all.operators.models.sklearn.robust_pls.RobustPLS method) (nirs4all.operators.models.sklearn.simpls.SIMPLS method) set_score_request() (nirs4all.operators.methods.n4m_ops.MethodsPLS method) (nirs4all.operators.models.multimodal.MultimodalClassifier method) (nirs4all.operators.models.multimodal.MultimodalRegressor method) (nirs4all.operators.models.sklearn.aom_fast.FastAOMPLSRidge method) (nirs4all.operators.models.sklearn.aom_fast.HardAOMChainPLSRidge method) (nirs4all.operators.models.sklearn.aom_fast.SingleChainPLSRidge method) (nirs4all.operators.models.sklearn.aom_fast.SoftAOMChainPLSRidge method) (nirs4all.operators.models.sklearn.aom_fast.SparseMultiKernelRidge method) (nirs4all.operators.models.sklearn.aom_pls_aomlib.AOMPLSAomlibRegressor method) (nirs4all.operators.models.sklearn.dipls.DiPLS method) (nirs4all.operators.models.sklearn.fckpls.FCKPLS method) (nirs4all.operators.models.sklearn.ikpls.IKPLS method) (nirs4all.operators.models.sklearn.ipls.IntervalPLS method) (nirs4all.operators.models.sklearn.kopls.KOPLS method) (nirs4all.operators.models.sklearn.lwpls.LWPLS method) (nirs4all.operators.models.sklearn.mbpls.MBPLS method) (nirs4all.operators.models.sklearn.oklmpls.OKLMPLS method) (nirs4all.operators.models.sklearn.opls.OPLS method) (nirs4all.operators.models.sklearn.oplsda.OPLSDA method) (nirs4all.operators.models.sklearn.pcr.PCR method) (nirs4all.operators.models.sklearn.recursive_pls.RecursivePLS method) (nirs4all.operators.models.sklearn.robust_pls.RobustPLS method) (nirs4all.operators.models.sklearn.simpls.SIMPLS method) (nirs4all.operators.models.sklearn.sparsepls.SparsePLS method) (nirs4all.operators.models.sklearn.tabpfn_nirs.TabPFNNIRSRegressor method) set_step() (nirs4all.pipeline.retrainer.ExtractedPipeline method) set_transform_request() (nirs4all.operators.transforms.nirs.AirPLS method) (nirs4all.operators.transforms.nirs.ArPLS method) (nirs4all.operators.transforms.nirs.ASLSBaseline method) (nirs4all.operators.transforms.nirs.BEADS method) (nirs4all.operators.transforms.nirs.IASLS method) (nirs4all.operators.transforms.nirs.IModPoly method) (nirs4all.operators.transforms.nirs.LogTransform method) (nirs4all.operators.transforms.nirs.ModPoly method) (nirs4all.operators.transforms.nirs.PyBaselineCorrection method) (nirs4all.operators.transforms.nirs.ReflectanceToAbsorbance method) (nirs4all.operators.transforms.nirs.RollingBall method) (nirs4all.operators.transforms.nirs.SNIP method) (nirs4all.operators.transforms.nirs.WaveletFeatures method) (nirs4all.operators.transforms.nirs.WaveletPCA method) (nirs4all.operators.transforms.nirs.WaveletSVD method) (nirs4all.operators.transforms.norris_williams.NorrisWilliams method) (nirs4all.operators.transforms.scalers.Derivate method) severity (nirs4all.api.robustness.RobustnessScenarioResult attribute) (nirs4all.api.robustness.RobustnessScenarioSpec attribute) (nirs4all.data.schema.validation.error_codes.DiagnosticMessage property) (nirs4all.data.schema.validation.error_codes.ErrorCode attribute) (nirs4all.pipeline.config.generator.ValidationError attribute) sg_polyorder (nirs4all.synthesis.fitter.DerivativeAwareForwardModelFitter attribute) sg_window (nirs4all.synthesis.fitter.DerivativeAwareForwardModelFitter attribute) ShapAnalyzer (class in nirs4all.visualization.analysis.shap) shape_after (nirs4all.visualization.pipeline_diagram.PipelineNode attribute) shape_before (nirs4all.visualization.pipeline_diagram.PipelineNode attribute) ShapeMismatchStrategy (class in nirs4all.operators.data.merge) shapes (nirs4all.pipeline.execution.preprocessing.PreprocessingReplay attribute) share_model_folds() (in module nirs4all.pipeline.dagml.sequential_models) shift_per_degree (nirs4all.synthesis.environmental.TemperatureEffectParams attribute) short_cutoff (nirs4all.synthesis.detectors.DetectorSpectralResponse attribute) short_preprocessings_str() (nirs4all.data.raw_multisource.RawMultiSourceDataset method) shot_noise_enabled (nirs4all.synthesis.detectors.NoiseModelConfig attribute) shot_noise_factor (nirs4all.synthesis.detectors.NoiseModelConfig attribute) should_invert_x_axis() (in module nirs4all.utils.header_units) should_train_step() (nirs4all.pipeline.retrainer.RetrainConfig method) show_count (nirs4all.core.logging.progress.ProgressConfig attribute) show_elapsed (nirs4all.core.logging.progress.ProgressConfig attribute) show_eta (nirs4all.core.logging.progress.ProgressConfig attribute) show_percentage (nirs4all.core.logging.progress.ProgressConfig attribute) show_rate (nirs4all.core.logging.progress.ProgressConfig attribute) shuffle (nirs4all.data.schema.config.PartitionConfig attribute) (nirs4all.pipeline.analysis.splitter_config.SplitterConfig attribute) (nirs4all.synthesis.builder.BuilderState attribute) SI (nirs4all.synthesis.instruments.DetectorType attribute)

sigma (nirs4all.synthesis.components.NIRBand attribute) sigmas (nirs4all.synthesis.fitter.RealBandFitResult attribute) signal_score (nirs4all.analysis.results.TransferResult attribute) signal_to_confound_ratio (nirs4all.synthesis.builder.BuilderState attribute) signal_type (nirs4all.data.detection.detector.DetectionResult attribute) SIGNAL_TYPE_PATTERNS (nirs4all.data.detection.detector.AutoDetector attribute) SignalTypeConverter (class in nirs4all.operators.transforms.signal_conversion) SignalTypeDetector (class in nirs4all.data.signal_type) SignalTypeEnum (class in nirs4all.data.schema.config) signature (nirs4all.operators.models.sklearn.aom_fast.AbsorbanceBase property) (nirs4all.operators.models.sklearn.aom_fast.ASLSBase property) (nirs4all.operators.models.sklearn.aom_fast.BaseTransform property) (nirs4all.operators.models.sklearn.aom_fast.EMSCBase property) (nirs4all.operators.models.sklearn.aom_fast.OperatorChain property) (nirs4all.operators.models.sklearn.aom_fast.OSCBase property) (nirs4all.operators.models.sklearn.aom_fast.SNVOSCBase property) (nirs4all.operators.models.sklearn.aom_fast.WhittakerBaseLine property) SimpleScale (class in nirs4all.operators.transforms.scalers) simplify() (nirs4all.operators.models.sklearn.aom_fast.OperatorChain method) simplify_each (nirs4all.operators.models.sklearn.aom_fast.ChainGenerationConfig attribute) SIMPLS (class in nirs4all.operators.models.sklearn.simpls) simulate_detector_effects() (in module nirs4all.synthesis.detectors) sin (nirs4all.synthesis.accelerated.AcceleratedArrays attribute) SINGLE (nirs4all.pipeline.resolver.FoldStrategy attribute) SingleChainPLSRidge (class in nirs4all.operators.models.sklearn.aom_fast) size (nirs4all.pipeline.storage.artifacts.artifact_loader.LRUCache property) size_bytes (nirs4all.data.performance.cache.CacheEntry attribute) skewness (nirs4all.synthesis.fitter.SpectralProperties attribute) SKIP (nirs4all.core.logging.events.EventType attribute) slice_by (nirs4all.api.robustness.RobustnessReport attribute) slice_key (nirs4all.api.robustness.RobustnessSliceResult attribute) slices (nirs4all.api.robustness.RobustnessScenarioResult attribute) slope_std (nirs4all.synthesis.fitter.OperatorVarianceParams attribute) (nirs4all.synthesis.fitter.SpectralProperties attribute) slopes (nirs4all.synthesis.fitter.SpectralProperties attribute) SLURRY (nirs4all.synthesis.prior.MatrixType attribute) small_set() (in module nirs4all.operators.transforms.presets) SmoothMagnitudeWarp (class in nirs4all.operators.augmentation.spectral) SNIP (class in nirs4all.operators.transforms.nirs) SNR_DISTRIBUTION (nirs4all.synthesis.validation.RealismMetric attribute) snr_estimate (nirs4all.synthesis.fitter.SpectralProperties attribute) snr_magnitude_match (nirs4all.synthesis.validation.SpectralRealismScore attribute) snv_correctable (nirs4all.synthesis.fitter.ScatteringInference attribute) SNV_CORRECTED (nirs4all.synthesis.fitter.PreprocessingType attribute) SNVBase (class in nirs4all.operators.models.sklearn.aom_fast) SNVOSCBase (class in nirs4all.operators.models.sklearn.aom_fast) soft_max_mixture_size (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) soft_rho (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) SoftAOMChainPLSRidge (class in nirs4all.operators.models.sklearn.aom_fast) SOLID (nirs4all.synthesis.prior.MatrixType attribute) sort_ascending (nirs4all.api.inspector_views.RankingsResponse attribute) SOURCE (nirs4all.data.reduction.PredictionLevel attribute) SOURCE_AGGREGATE (nirs4all.data.raw_multisource.RepresentationStage attribute) (nirs4all.data.raw_multisource.RepresentationUnitLevel attribute) source_artifacts (nirs4all.pipeline.execution.preprocessing.PreprocessingReplay attribute) SOURCE_CONCAT (nirs4all.core.logging.events.EventType attribute) source_configs (nirs4all.synthesis.sources.MultiSourceResult attribute) source_context (nirs4all.core.logging.context.RunState attribute) source_effective_plan_fingerprint (nirs4all.api.native_retrain_lineage.NativeRetrainLineage attribute) source_id (nirs4all.data.reduction.PredictionUnitId attribute) (nirs4all.data.relations.ObservationRecord attribute) (nirs4all.data.relations.SourceObservations attribute) source_ids (nirs4all.data.raw_multisource.AlignedMaterialization attribute) (nirs4all.data.raw_multisource.RawMultiSourceDataset property) (nirs4all.data.relations.NormalizedObservationTable property) source_ids() (in module nirs4all.pipeline.dagml.envelope) source_index (nirs4all.core.logging.events.LogEvent attribute) (nirs4all.pipeline.storage.artifacts.utils.ExecutionPath attribute) source_layout() (nirs4all.data.multimodal.MultimodalSpectroDataset method) source_merge (nirs4all.operators.data.merge.MergeConfig attribute) source_models (nirs4all.controllers.models.stacking.classification.MetaFeatureInfo attribute) source_mtime (nirs4all.data.performance.cache.CacheEntry attribute) source_name (nirs4all.core.logging.events.LogEvent attribute) (nirs4all.synthesis.fitter.FittedParameters attribute) source_name() (nirs4all.data.multimodal.MultimodalSpectroDataset method) source_names (nirs4all.operators.data.merge.MergeConfig attribute) (nirs4all.operators.data.repetition.RepetitionConfig attribute) (nirs4all.pipeline.dagml.cv_weight_transfer.TransferInputContract attribute) (nirs4all.synthesis.sources.MultiSourceResult property) SOURCE_OBSERVATION (nirs4all.data.raw_multisource.RepresentationStage attribute) (nirs4all.data.raw_multisource.RepresentationUnitLevel attribute) source_order() (in module nirs4all.pipeline.dagml.envelope) source_outcome_fingerprint (nirs4all.api.native_retrain_lineage.NativeRetrainLineage attribute) source_path (nirs4all.data.performance.cache.CacheEntry attribute) source_pipeline_uid (nirs4all.pipeline.retrainer.ExtractedPipeline attribute) source_pipelines (nirs4all.operators.data.merge.SourceBranchConfig attribute) SOURCE_PROCESS (nirs4all.core.logging.events.EventType attribute) source_properties (nirs4all.synthesis.fitter.FittedParameters attribute) (nirs4all.synthesis.fitter.RealDataFitter attribute) source_row (nirs4all.data.relations.ObservationRecord attribute) SOURCE_SAMPLE (nirs4all.data.relations.UnitLevel attribute) source_schemas_from_cohort() (in module nirs4all.pipeline.dagml.methods_multimodal) source_seed (nirs4all.api.native_retrain_lineage.NativeRetrainLineage attribute) source_selected_variant_fingerprint (nirs4all.api.native_retrain_lineage.NativeRetrainLineage attribute) source_selected_variant_id (nirs4all.api.native_retrain_lineage.NativeRetrainLineage attribute) source_snapshots (nirs4all.pipeline.execution.step_cache.CachedStepState attribute) source_spec() (nirs4all.data.relations.RepetitionSpec method) source_stacking_missing_policy() (in module nirs4all.pipeline.dagml.source_stacking) SOURCE_TO_COMBO (nirs4all.operators.data.merge.MetaFeatureAdapter attribute) source_training_request_fingerprint (nirs4all.api.native_retrain_lineage.NativeRetrainLineage attribute) source_type (nirs4all.data.parsers.base.ParserResult attribute) (nirs4all.pipeline.bundle.loader.BundleMetadata attribute) (nirs4all.synthesis.sources.SourceConfig attribute) source_url (nirs4all.synthesis.benchmarks.BenchmarkDatasetInfo attribute) SourceBranchConfig (class in nirs4all.operators.data.merge) SourceConfig (class in nirs4all.synthesis.sources) SourceContext (class in nirs4all.core.logging.context) SourceIncompatibleStrategy (class in nirs4all.operators.data.merge) SourceMergeConfig (class in nirs4all.controllers.data.merge) SourceMergeStrategy (class in nirs4all.operators.data.merge) SourceObservations (class in nirs4all.data.relations) SourceRepetitionSpec (class in nirs4all.data.relations) sources (nirs4all.controllers.data.merge.SourceMergeConfig attribute) (nirs4all.data.relations.RepetitionSpec attribute) (nirs4all.synthesis.builder.BuilderState attribute) (nirs4all.synthesis.sources.MultiSourceResult attribute) SourcesParser (class in nirs4all.data.parsers.files_parser) SourceType (class in nirs4all.pipeline.resolver) space (nirs4all.api.tuning.NativeTuning attribute) spacer_thickness_mm (nirs4all.synthesis.measurement_modes.TransflectanceConfig attribute) sparse_mkr_max_chains (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) SparseMultiKernelRidge (class in nirs4all.operators.models.sklearn.aom_fast) SparsePLS (class in nirs4all.operators.models.sklearn.sparsepls) SpatialDropout1D (class in nirs4all.operators.models.jax.nicon) (class in nirs4all.operators.models.pytorch.nicon) spec (nirs4all.api.tuning.SearchSpaceParameter attribute) (nirs4all.data.relations.RelationConfig attribute) (nirs4all.data.relations.SampleRelationPlan attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationArtifact attribute) special_set() (in module nirs4all.operators.transforms.presets) SpectraChartController (class in nirs4all.controllers.charts.spectra) spectral_masking (nirs4all.synthesis.builder.BuilderState attribute) spectral_transformer() (in module nirs4all.operators.models.pytorch.spectral_transformer) spectral_transformer_classification() (in module nirs4all.operators.models.pytorch.spectral_transformer) spectral_transformer_large() (in module nirs4all.operators.models.pytorch.spectral_transformer) spectral_transformer_large_classification() (in module nirs4all.operators.models.pytorch.spectral_transformer) spectral_transformer_small() (in module nirs4all.operators.models.pytorch.spectral_transformer) spectral_transformer_small_classification() (in module nirs4all.operators.models.pytorch.spectral_transformer) SpectralComponent (class in nirs4all.synthesis.components) SpectralDistributionController (class in nirs4all.controllers.charts.spectral_distribution) SpectralProperties (class in nirs4all.synthesis.fitter) SpectralQualityFilter (class in nirs4all.operators.filters.spectral_quality) SpectralRealismScore (class in nirs4all.synthesis.validation) SpectralRegion (class in nirs4all.synthesis.environmental) SpectralTransformer (class in nirs4all.operators.models.pytorch.spectral_transformer) SpikeNoise (class in nirs4all.operators.augmentation.spectral) Spinner (class in nirs4all.utils.spinner) spinner() (in module nirs4all.core.logging.progress) spinner_context() (in module nirs4all.utils.spinner) SpinnerProgress (class in nirs4all.core.logging.progress) spl_norml() (in module nirs4all.operators.transforms.scalers) Spline_Curve_Simplification (class in nirs4all.operators.augmentation.splines) Spline_Smoothing (class in nirs4all.operators.augmentation.splines) Spline_X_Perturbations (class in nirs4all.operators.augmentation.splines) Spline_X_Simplification (class in nirs4all.operators.augmentation.splines) Spline_Y_Perturbations (class in nirs4all.operators.augmentation.splines) split() (nirs4all.controllers.models.pipeline_cv.PrecomputedFoldSplitter method) (nirs4all.operators.splitters.splitters.BinnedStratifiedGroupKFold method) (nirs4all.operators.splitters.splitters.CustomSplitter method) (nirs4all.operators.splitters.splitters.KBinsStratifiedSplitter method) (nirs4all.operators.splitters.splitters.KennardStoneSplitter method) (nirs4all.operators.splitters.splitters.KMeansSplitter method) (nirs4all.operators.splitters.splitters.SPlitSplitter method) (nirs4all.operators.splitters.splitters.SPXYFold method) (nirs4all.operators.splitters.splitters.SPXYGFold method) (nirs4all.operators.splitters.splitters.SPXYSplitter method) (nirs4all.operators.splitters.splitters.SystematicCircularSplitter method) split_features() (nirs4all.data.multimodal.MultimodalSpectroDataset method) split_invocation_for() (in module nirs4all.pipeline.dagml.cli_runner) split_trial_fit_overrides() (in module nirs4all.pipeline.dagml.host_finetune) SplitConformalCalibrator (class in nirs4all.pipeline.dagml.conformal_contracts) SplitGroupingCapability (class in nirs4all.controllers.splitters.split) SPlitSplitter (class in nirs4all.operators.splitters.splitters) splitter_class (nirs4all.pipeline.analysis.splitter_config.SplitterConfig attribute) splitter_step_index (nirs4all.pipeline.analysis.topology.PipelineTopology attribute) SplitterConfig (class in nirs4all.pipeline.analysis.splitter_config) SPXYFold (class in nirs4all.operators.splitters.splitters) SPXYGFold (class in nirs4all.operators.splitters.splitters) SPXYSplitter (class in nirs4all.operators.splitters.splitters) sqrt (nirs4all.synthesis.accelerated.AcceleratedArrays attribute) SqueezeExcite() (in module nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn) STACK (nirs4all.data.raw_multisource.RepresentationStage attribute) (nirs4all.data.raw_multisource.RepresentationUnitLevel attribute) (nirs4all.operators.data.merge.SourceMergeStrategy attribute) stack_context (nirs4all.core.logging.context.RunState attribute) stack_params() (in module nirs4all.optimization.optuna) StackContext (class in nirs4all.core.logging.context) stacking_fit_contract (nirs4all.data.relation_replay_manifest.RelationReplayManifest attribute) (nirs4all.operators.data.merge.MergeConfig attribute) stacking_source_presence_contract() (in module nirs4all.pipeline.dagml.multimodal_contracts) StackingFitContract (class in nirs4all.operators.data.merge) StackingSelectionProtocol (class in nirs4all.operators.data.merge) StackingTaskType (class in nirs4all.controllers.models.stacking.classification) stage (nirs4all.data.raw_multisource.RepresentationPlan attribute) stage_host_artifacts() (in module nirs4all.pipeline.dagml.host_artifacts) stages (nirs4all.operators.models.sklearn.aom_fast.OperatorChain property) staging_manifest (nirs4all.data.relation_replay_manifest.RelationReplayManifest attribute) START (nirs4all.core.logging.events.EventType attribute) start() (nirs4all.core.logging.progress.ProgressBar method) (nirs4all.core.logging.progress.SpinnerProgress method) (nirs4all.utils.spinner.Spinner method) start_step (nirs4all.pipeline.execution.preprocessing.PreprocessingReplay property) start_time (nirs4all.core.logging.context.RunState attribute) started_at (nirs4all.pipeline.run.Run attribute) starting() (nirs4all.core.logging.config.Nirs4allLogger method) state_id (nirs4all.data.reduction.ReducerState attribute) STATELESS (nirs4all.data.reduction.FitScope attribute) statistics_ (nirs4all.operators.transforms.sequence.SequenceSummary attribute) stats (nirs4all.operators.filters.report.FilterResult attribute) (nirs4all.pipeline.storage.artifacts.artifact_loader.LRUCache property) stats() (nirs4all.data.performance.cache.DataCache method) (nirs4all.pipeline.storage.array_store.ArrayStore method) status (nirs4all.core.logging.events.LogEvent attribute) (nirs4all.pipeline.run.Run attribute) std (nirs4all.api.inspector_views.BranchComparisonEntry attribute) (nirs4all.synthesis.products.ComponentVariation attribute) std_size_um (nirs4all.synthesis.scattering.ParticleSizeDistribution attribute) std_spectrum (nirs4all.synthesis.fitter.SpectralProperties attribute) stem() (in module nirs4all.operators.models.tensorflow.legacy.resnet_v2_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn) stem_bottleneck() (in module nirs4all.operators.models.tensorflow.legacy.resnet_v2_1d_cnn) (in module nirs4all.operators.models.tensorflow.legacy.se_resnet_1d_cnn) STEP (nirs4all.core.logging.events.EventType attribute) step_has_native_grid() (in module nirs4all.pipeline.dagml_bridge) step_id (nirs4all.controllers.models.components.identifier_generator.ModelIdentifiers attribute) (nirs4all.pipeline.config.context.StepMetadata attribute) step_idx (nirs4all.data.predictions.PredictionResult property) step_index (nirs4all.pipeline.analysis.topology.ModelNodeInfo attribute) (nirs4all.pipeline.retrainer.StepMode attribute) (nirs4all.pipeline.storage.artifacts.utils.ExecutionPath attribute) (nirs4all.visualization.pipeline_diagram.PipelineNode attribute) step_modes (nirs4all.pipeline.retrainer.RetrainConfig attribute) step_name (nirs4all.api.inspector_views.PreprocessingImpactEntry attribute) step_number (nirs4all.pipeline.config.context.PipelineState attribute) StepMetadata (class in nirs4all.pipeline.config.context) StepMode (class in nirs4all.pipeline.retrainer) StepResult (class in nirs4all.pipeline.execution.result) steps (nirs4all.pipeline.dagml.exclude.FoldLocalExclusion attribute) (nirs4all.pipeline.execution.preprocessing.PreprocessingReplay attribute) (nirs4all.pipeline.retrainer.ExtractedPipeline attribute) StepType (class in nirs4all.pipeline.steps.parser) stop() (nirs4all.core.logging.progress.SpinnerProgress method) (nirs4all.utils.spinner.Spinner method) storage (nirs4all.api.tuning.NativeTuning attribute) strategy (nirs4all.controllers.data.merge.SourceMergeConfig attribute) STRATIFIED (nirs4all.data.raw_multisource.ComboSelection attribute) stratify (nirs4all.data.schema.config.PartitionConfig attribute) (nirs4all.synthesis.builder.BuilderState attribute) stray_light (nirs4all.synthesis.fitter.InstrumentChain attribute) stray_light_fraction (nirs4all.synthesis.fitter.EdgeArtifactInference attribute) StrayLightAugmenter (class in nirs4all.operators.augmentation.edge_artifacts) STRICT (nirs4all.data.relations.MissingRepetitionPolicy attribute) (nirs4all.data.relations.MissingSourcePolicy attribute) (nirs4all.operators.data.merge.MissingPredictionPolicy attribute) strict_cardinality (nirs4all.data.relations.RepetitionSpec attribute) STRICT_WEIGHT_SUPPORT (nirs4all.data.fit_influence.FitInfluenceMode attribute) StrictMethodsTerminalPredictionExecution (class in nirs4all.pipeline.dagml.terminal_predict_lowerer) strides (nirs4all.operators.models.jax.nicon.DepthwiseConv1D attribute) (nirs4all.operators.models.jax.nicon.MaxPooling1D attribute) (nirs4all.operators.models.jax.nicon.SeparableConv1D attribute) structural_mlp() (in module nirs4all.operators.models.pytorch.mlp) structural_tuning_training_outcome (nirs4all.pipeline.dagml.methods_multimodal.MethodsMultimodalRunResult attribute) structural_tuning_training_request (nirs4all.pipeline.dagml.methods_multimodal.MethodsMultimodalRunResult attribute) studio_playground_job_v1() (in module nirs4all.api.library_playground) studio_run_detail_http_contract() (in module nirs4all.pipeline.storage.workspace_read_contract) studio_run_detail_http_inputs_v1() (in module nirs4all.pipeline.storage.workspace_read_contract) studio_scientific_job_v1() (in module nirs4all.api.studio_scientific) studio_scientific_job_v2() (in module nirs4all.api.studio_scientific_general) studio_synthetic_dataset_job_v1() (in module nirs4all.api.general_synthesis) study_name (nirs4all.api.tuning.NativeTuning attribute) subcategory (nirs4all.synthesis.components.SpectralComponent attribute) SUBPIPELINE (nirs4all.pipeline.steps.parser.StepType attribute) substep_index (nirs4all.pipeline.storage.artifacts.utils.ExecutionPath attribute) (nirs4all.visualization.pipeline_diagram.PipelineNode attribute) success (nirs4all.data.parsers.base.ParserResult attribute) success() (nirs4all.core.logging.config.Nirs4allLogger method) suggest_components() (nirs4all.synthesis.fitter.ComponentFitter method) suggest_mixed_merge() (nirs4all.controllers.data.merge.AsymmetricBranchAnalyzer method) suggested_inverse (nirs4all.synthesis.fitter.PreprocessingInference attribute) suggested_n_components (nirs4all.synthesis.fitter.FittedParameters attribute) suggestion (nirs4all.data.schema.validation.error_codes.DiagnosticMessage attribute) (nirs4all.data.schema.validation.validators.ValidationError attribute) (nirs4all.pipeline.config.generator.ValidationError attribute) suggestion_template (nirs4all.data.schema.validation.error_codes.ErrorCode attribute) sum (nirs4all.synthesis.accelerated.AcceleratedArrays attribute) summarize_configs() (in module nirs4all.pipeline.config.generator) summary (nirs4all.controllers.data.merge.AsymmetryReport attribute) (nirs4all.pipeline.run.Run attribute) summary() (nirs4all.analysis.results.TransferSelectionResults method) (nirs4all.data.predictions.PredictionResult method) (nirs4all.data.serialization.serializer.ConfigDiff method) (nirs4all.operators.filters.report.FilteringReport method) (nirs4all.synthesis.benchmarks.BenchmarkDatasetInfo method) (nirs4all.synthesis.fitter.ComponentFitResult method) (nirs4all.synthesis.fitter.FittedParameters method) (nirs4all.synthesis.fitter.OptimizedFitResult method) (nirs4all.synthesis.fitter.RealBandFitResult method) (nirs4all.synthesis.fitter.VarianceFitResult method) (nirs4all.synthesis.validation.DatasetComparisonResult method) (nirs4all.synthesis.validation.SpectralRealismScore method) (nirs4all.visualization.analysis.branch.BranchAnalyzer method) summary_artifact() (nirs4all.api.robustness.RobustnessReport method) summary_rows() (nirs4all.api.robustness.RobustnessReport method) SUPPORTED_DISTRIBUTIONS (nirs4all.pipeline.config.generator.SampleStrategy attribute) SUPPORTED_EXTENSIONS (nirs4all.controllers.splitters.fold_file_loader.FoldFileParser attribute) supported_extensions (nirs4all.data.loaders.archive_loader.EnhancedZipLoader attribute) (nirs4all.data.loaders.archive_loader.TarLoader attribute) (nirs4all.data.loaders.csv_loader_new.CSVLoader attribute) (nirs4all.data.loaders.excel_loader.ExcelLoader attribute) (nirs4all.data.loaders.matlab_loader.MatlabLoader attribute) (nirs4all.data.loaders.numpy_loader.NumpyLoader attribute) (nirs4all.data.loaders.parquet_loader.ParquetLoader attribute) SUPPORTED_EXTENSIONS (nirs4all.data.parsers.folder_parser.FolderParser attribute) SUPPORTED_KEYWORDS (nirs4all.controllers.data.merge.MergeController attribute) supports() (nirs4all.data.loaders.archive_loader.EnhancedZipLoader class method) (nirs4all.data.loaders.archive_loader.TarLoader class method) (nirs4all.data.loaders.csv_loader_new.CSVLoader class method) (nirs4all.data.loaders.excel_loader.ExcelLoader class method) (nirs4all.data.loaders.matlab_loader.MatlabLoader class method) (nirs4all.data.loaders.numpy_loader.NumpyLoader class method) (nirs4all.data.loaders.parquet_loader.ParquetLoader class method) supports_prediction_mode() (nirs4all.controllers.charts.augmentation.AugmentationChartController class method) (nirs4all.controllers.charts.exclusion.ExclusionChartController class method) (nirs4all.controllers.charts.folds.FoldChartController class method) (nirs4all.controllers.charts.spectra.SpectraChartController class method) (nirs4all.controllers.charts.spectral_distribution.SpectralDistributionController class method) (nirs4all.controllers.charts.targets.YChartController class method) (nirs4all.controllers.data.auto_transfer_preproc.AutoTransferPreprocessingController class method) (nirs4all.controllers.data.branch.BranchController class method) (nirs4all.controllers.data.concat_transform.ConcatAugmentationController class method) (nirs4all.controllers.data.exclude.ExcludeController class method) (nirs4all.controllers.data.feature_augmentation.FeatureAugmentationController class method) (nirs4all.controllers.data.feature_selection.FeatureSelectionController class method) (nirs4all.controllers.data.merge.MergeController class method) (nirs4all.controllers.data.rep_fusion.RepFusionController class method) (nirs4all.controllers.data.repetition.RepToPPController class method) (nirs4all.controllers.data.repetition.RepToSourcesController class method) (nirs4all.controllers.data.resampler.ResamplerController class method) (nirs4all.controllers.data.sample_augmentation.SampleAugmentationController class method) (nirs4all.controllers.data.tag.TagController class method) (nirs4all.controllers.flow.dummy.DummyController class method) (nirs4all.controllers.models.residual_model.ResidualModelController class method) (nirs4all.controllers.splitters.fold_file_loader.FoldFileLoaderController class method) (nirs4all.controllers.splitters.split.CrossValidatorController class method) (nirs4all.controllers.transforms.y_transformer.YTransformerMixinController class method) supports_terminal_prediction_relation_authority() (in module nirs4all.pipeline.dagml.envelope) synonyms (nirs4all.synthesis.components.SpectralComponent attribute) SystematicCircularSplitter (class in nirs4all.operators.splitters.splitters)

T

table (nirs4all.data.relations.SampleRelationPlan attribute) TabPFNNIRSRegressor (class in nirs4all.operators.models.sklearn.tabpfn_nirs) tabular_records() (nirs4all.api.robustness.RobustnessReport method) tag_filters (nirs4all.pipeline.config.context.DataSelector attribute) TagController (class in nirs4all.controllers.data.tag) tags (nirs4all.synthesis.components.SpectralComponent attribute) (nirs4all.synthesis.products.ProductTemplate attribute) take() (nirs4all.pipeline.dagml.fixed_cohort_views.FixedCohortTaskViews method) target (nirs4all.api.tuning.TuningConformalScoreCalibration attribute) target_component (nirs4all.synthesis.builder.BuilderState attribute) target_content_fingerprint (nirs4all.pipeline.dagml.fit_identity.DagMLCalibrationIdentityFrame attribute) target_content_fingerprint() (in module nirs4all.pipeline.dagml.fit_identity) target_features (nirs4all.pipeline.config.context.StepMetadata attribute) target_grid (nirs4all.synthesis.fitter.DerivativeAwareForwardModelFitter attribute) (nirs4all.synthesis.fitter.ForwardModelFitter attribute) target_id (nirs4all.data.relations.ObservationRecord attribute) target_index (nirs4all.api.inspector_views.ConfusionMatrixRequest attribute) (nirs4all.api.inspector_views.ScatterRequest attribute) target_level (nirs4all.data.relations.RepetitionSpec attribute) target_name (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationArtifact attribute) target_names (nirs4all.pipeline.dagml.cv_weight_transfer.TransferInputContract attribute) target_names() (in module nirs4all.pipeline.dagml.envelope) target_range (nirs4all.synthesis.builder.BuilderState attribute) target_samples (nirs4all.pipeline.config.context.StepMetadata attribute) target_transform (nirs4all.synthesis.builder.BuilderState attribute) target_type_weights (nirs4all.synthesis.prior.NIRSPriorConfig attribute) targets (nirs4all.api.tuning.TuningConformalScoreCalibration attribute) (nirs4all.data.raw_multisource.AlignedMaterialization attribute) (nirs4all.data.relations.SourceObservations attribute) (nirs4all.synthesis.benchmarks.BenchmarkDatasetInfo attribute) (nirs4all.synthesis.sources.MultiSourceResult attribute) targets_by_sample() (nirs4all.data.raw_multisource.RawMultiSourceDataset method) (nirs4all.data.relations.NormalizedObservationTable method) TarLoader (class in nirs4all.data.loaders.archive_loader) task_compatibility (nirs4all.data.reduction.ReductionPlan attribute) task_type (nirs4all.api.tuning.TuningWinner attribute) (nirs4all.controllers.models.stacking.classification.ClassificationInfo attribute) (nirs4all.pipeline.run.DatasetInfo attribute) TaskCompatibility (class in nirs4all.data.reduction) TaskType (class in nirs4all.data.schema.config) TaskTypeDetector (class in nirs4all.controllers.models.stacking.classification) tcv1_fingerprint_without() (in module nirs4all.pipeline.dagml.training_contracts) temperature (nirs4all.synthesis.environmental.EnvironmentalEffectsConfig attribute) temperature_config (nirs4all.synthesis.fitter.FittedParameters attribute) temperature_interaction (nirs4all.synthesis.environmental.MoistureConfig attribute) temperature_k (nirs4all.synthesis.detectors.DetectorConfig attribute) temperature_range (nirs4all.synthesis.prior.NIRSPriorConfig attribute) temperature_sensitivity_score (nirs4all.synthesis.fitter.SpectralProperties attribute) temperature_variation (nirs4all.synthesis.environmental.TemperatureConfig attribute) TemperatureAugmenter (class in nirs4all.operators.augmentation.environmental) TemperatureConfig (class in nirs4all.synthesis.environmental) TemperatureEffectParams (class in nirs4all.synthesis.environmental) TemplateInfo (class in nirs4all.pipeline.run) templates (nirs4all.pipeline.run.Run attribute) temporal_drift (nirs4all.synthesis.builder.BuilderState attribute) TensorFlowCallbackFactory (class in nirs4all.controllers.models.tensorflow.config) TensorFlowCompilationConfig (class in nirs4all.controllers.models.tensorflow.config) TensorFlowDataPreparation (class in nirs4all.controllers.models.tensorflow.data_prep) TensorFlowFitConfig (class in nirs4all.controllers.models.tensorflow.config) TensorFlowModelController (class in nirs4all.controllers.models.tensorflow_model) TensorPCA (class in nirs4all.operators.models.multimodal) terminal_node_id (nirs4all.pipeline.dagml.terminal_predict_lowerer.StrictMethodsTerminalPredictionExecution attribute) terminal_port (nirs4all.pipeline.dagml.terminal_predict_lowerer.StrictMethodsTerminalPredictionExecution attribute) terminal_prediction (nirs4all.api.native_result.NativeMethodsRunResult property) terminal_receipt (nirs4all.api.native_result.NativeMethodsRunResult property) terminal_run_id (nirs4all.api.native_witness.NativeMethodsTerminalExecutionClaim attribute) TEST (nirs4all.data.reduction.PredictionScope attribute) (nirs4all.data.relations.Partition attribute) test (nirs4all.data.schema.config.PartitionConfig attribute) test_file (nirs4all.data.schema.config.PartitionConfig attribute) test_installation() (in module nirs4all.cli.installation_test) test_integration() (in module nirs4all.cli.installation_test) test_size (nirs4all.pipeline.analysis.splitter_config.SplitterConfig attribute) test_values (nirs4all.data.schema.config.PartitionConfig attribute) TEXT (nirs4all.data.schema.config.HeaderUnit attribute) TEXTILE (nirs4all.synthesis.domains.DomainCategory attribute) thermal_noise_enabled (nirs4all.synthesis.detectors.NoiseModelConfig attribute) thermal_noise_factor (nirs4all.synthesis.detectors.NoiseModelConfig attribute) thin_nicon() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) THIOL (nirs4all.synthesis.procedural.FunctionalGroupType attribute) threshold (nirs4all.synthesis.validation.MetricResult attribute) tilt_std (nirs4all.synthesis.fitter.FittedParameters attribute) timestamp (nirs4all.core.logging.events.LogEvent attribute) (nirs4all.data.performance.cache.CacheEntry attribute) (nirs4all.operators.filters.report.FilteringReport attribute) timing (nirs4all.analysis.results.TransferSelectionResults attribute) TISSUE (nirs4all.synthesis.prior.MatrixType attribute) to_artifact_id() (nirs4all.pipeline.storage.artifacts.utils.ExecutionPath method) to_bytes() (in module nirs4all.pipeline.storage.artifacts.artifact_persistence) to_columns() (nirs4all.data.relations.NormalizedObservationTable method) to_contract() (nirs4all.pipeline.dagml.resources.DagMLExecutionResources method) to_csv() (in module nirs4all.api.generate) (nirs4all.synthesis.exporter.DatasetExporter method) (nirs4all.visualization.analysis.branch.BranchSummary method) to_dataframe() (in module nirs4all.pipeline.config.generator) (nirs4all.analysis.results.TransferSelectionResults method) (nirs4all.visualization.analysis.branch.BranchSummary method) to_dict() (nirs4all.analysis.results.TransferResult method) (nirs4all.api.advanced_capabilities.AdvancedApiCapabilityDecision method) (nirs4all.api.calibrate.ConformalCalibrationData method) (nirs4all.api.native_retrain_lineage.NativeRetrainLineage method) (nirs4all.api.native_witness.NativeMethodsExecutionClaim method) (nirs4all.api.native_witness.NativeMethodsTerminalExecutionClaim method) (nirs4all.api.robustness.RobustnessMetricSet method) (nirs4all.api.robustness.RobustnessReport method) (nirs4all.api.robustness.RobustnessScenarioResult method) (nirs4all.api.robustness.RobustnessScenarioSpec method) (nirs4all.api.robustness.RobustnessSliceResult method) (nirs4all.api.tuning.NativeTuning method) (nirs4all.api.tuning.OrderedSearchSpaceSpec method) (nirs4all.api.tuning.ParameterPatch method) (nirs4all.api.tuning.SearchSpaceParameter method) (nirs4all.api.tuning.TuningCalibration method) (nirs4all.api.tuning.TuningConformalScoreCalibration method) (nirs4all.api.tuning.TuningPassthrough method) (nirs4all.api.tuning.TuningScoreData method) (nirs4all.api.tuning.TuningWinner method) (nirs4all.controllers.data.merge.DisjointBranchInfo method) (nirs4all.controllers.data.merge.DisjointMergeMetadata method) (nirs4all.controllers.data.merge.SourceMergeConfig method) (nirs4all.core.logging.events.LogEvent method) (nirs4all.data.raw_multisource.CombinationPlan method) (nirs4all.data.raw_multisource.RepresentationPlan method) (nirs4all.data.reduction.ReducerState method) (nirs4all.data.reduction.ReductionPlan method) (nirs4all.data.relation_replay_manifest.RelationReplayManifest method) (nirs4all.data.relations.ObservationRecord method) (nirs4all.data.relations.RepetitionSpec method) (nirs4all.data.relations.SourceRepetitionSpec method) (nirs4all.data.schema.validation.error_codes.DiagnosticMessage method) (nirs4all.data.schema.validation.error_codes.DiagnosticReport method) (nirs4all.operators.data.merge.MergeConfig method) (nirs4all.operators.data.merge.MetaFeaturePlan method) (nirs4all.operators.data.merge.SourceBranchConfig method) (nirs4all.operators.data.merge.StackingFitContract method) (nirs4all.operators.data.rep_fusion.RepFusionConfig method) (nirs4all.operators.data.repetition.RepetitionConfig method) (nirs4all.operators.filters.report.FilteringReport method) (nirs4all.operators.filters.report.FilterResult method) (nirs4all.pipeline.config.generator.ExpansionTreeNode method) (nirs4all.pipeline.dagml.conformal_contracts.CalibratedRunResult method) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationArtifact method) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationCohortManifest method) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationCohortRow method) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationSpec method) (nirs4all.pipeline.dagml.conformal_contracts.ConformalMetricSet method) (nirs4all.pipeline.dagml.conformal_store.ConformalStoreManifest method) (nirs4all.pipeline.dagml.rt.RtResult method) (nirs4all.pipeline.dagml.rt.RtRunRequest method) (nirs4all.pipeline.execution.refit.config_extractor.RefitSlotPlan method) (nirs4all.pipeline.run.Run method) (nirs4all.synthesis.fitter.ComponentFitResult method) (nirs4all.synthesis.fitter.FittedParameters method) (nirs4all.synthesis.fitter.OperatorVarianceParams method) (nirs4all.synthesis.validation.SpectralRealismScore method) (nirs4all.visualization.analysis.branch.BranchSummary method) to_feature_matrix() (nirs4all.data.raw_multisource.AlignedMaterialization method) to_fold_list() (nirs4all.data.schema.config.FoldConfig method) to_folder() (in module nirs4all.api.generate) (nirs4all.synthesis.exporter.DatasetExporter method) to_full_config() (nirs4all.synthesis.fitter.FittedParameters method) to_generator_kwargs() (nirs4all.synthesis.fitter.FittedParameters method) to_html() (nirs4all.api.robustness.RobustnessReport method) to_json() (nirs4all.api.robustness.RobustnessReport method) (nirs4all.core.logging.events.LogEvent method) (nirs4all.data.serialization.serializer.ConfigSerializer method) (nirs4all.operators.filters.report.FilteringReport method) (nirs4all.pipeline.dagml.conformal_contracts.CalibratedRunResult method) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationArtifact method) (nirs4all.pipeline.portable_n4m_trained.PortableN4MTrainedPipeline method) to_latex() (nirs4all.visualization.analysis.branch.BranchSummary method) to_manifest() (nirs4all.data.meta_features.AlignedMetaFeatures method) (nirs4all.data.raw_multisource.AlignedMaterialization method) (nirs4all.data.raw_multisource.RawMultiSourceDataset method) to_markdown() (nirs4all.api.robustness.RobustnessReport method) (nirs4all.visualization.analysis.branch.BranchSummary method) to_numpy (nirs4all.synthesis.accelerated.AcceleratedArrays attribute) to_numpy() (nirs4all.synthesis.exporter.DatasetExporter method) to_params() (nirs4all.data.detection.detector.DetectionResult method) to_pipeline_spec() (nirs4all.analysis.results.TransferSelectionResults method) to_predict_result() (nirs4all.pipeline.dagml.conformal_contracts.CalibratedRunResult method) to_prepared() (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingRequestContracts method) to_preprocessing_list() (nirs4all.analysis.results.TransferSelectionResults method) to_resolved_prediction() (nirs4all.pipeline.bundle.loader.BundleLoader method) to_space_mapping() (nirs4all.api.tuning.OrderedSearchSpaceSpec method) to_spectro_dataset() (nirs4all.data.raw_multisource.AlignedMaterialization method) to_summary_json() (nirs4all.api.robustness.RobustnessReport method) to_tuning_spec() (nirs4all.api.tuning.NativeTuning method) to_yaml() (nirs4all.data.serialization.serializer.ConfigSerializer method) ToAbsorbance (class in nirs4all.operators.transforms.signal_conversion) top_bands() (nirs4all.synthesis.fitter.RealBandFitResult method) top_components() (nirs4all.synthesis.fitter.ComponentFitResult method) (nirs4all.synthesis.fitter.OptimizedFitResult method) top_global (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) top_k (nirs4all.pipeline.execution.refit.config_extractor.RefitCriterion attribute) top_k() (nirs4all.analysis.results.TransferSelectionResults method) top_per_base (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) top_per_family (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) top_predictions() (nirs4all.pipeline.storage.store_protocol.WorkspaceStoreProtocol method) TopKByMetricSelector (class in nirs4all.operators.models.selection) TopKComparisonChart (class in nirs4all.visualization.charts.top_k_comparison) TopologyNode (class in nirs4all.api.inspector_views) torch_declaration() (in module nirs4all.pipeline.dagml.structural_torch) torch_task_scope() (in module nirs4all.pipeline.dagml.torch_topology_replay) total (nirs4all.api.inspector_views.InspectorDataResponse attribute) (nirs4all.api.inspector_views.RankingsResponse attribute) (nirs4all.core.logging.context.BranchContext attribute) (nirs4all.core.logging.context.SourceContext attribute)

total_chains (nirs4all.api.inspector_views.BranchComparisonResponse attribute) (nirs4all.api.inspector_views.FoldStabilityResponse attribute) (nirs4all.api.inspector_views.HistogramResponse attribute) (nirs4all.api.inspector_views.PreprocessingImpactResponse attribute) total_error (nirs4all.api.inspector_views.BiasVarianceEntry attribute) (nirs4all.pipeline.analysis.model_diagnostics.BiasVarianceDecomposition attribute) total_pipeline_configs (nirs4all.pipeline.run.Run property) total_results (nirs4all.pipeline.run.RunSummary attribute) total_results_expected (nirs4all.pipeline.run.Run property) total_samples (nirs4all.api.inspector_views.ConfusionMatrixResponse attribute) (nirs4all.api.inspector_views.ScatterResponse attribute) (nirs4all.controllers.data.merge.DisjointBranchAnalysis attribute) total_size (nirs4all.data.performance.cache.DataCache property) total_sources (nirs4all.data.predictions.MergeReport attribute) trace (nirs4all.pipeline.retrainer.ExtractedPipeline attribute) trace() (nirs4all.core.logging.config.Nirs4allLogger method) trace_id (nirs4all.pipeline.bundle.loader.BundleMetadata attribute) TRACE_ID (nirs4all.pipeline.resolver.SourceType attribute) TRAIN (nirs4all.data.relations.Partition attribute) train (nirs4all.data.schema.config.FoldDefinition attribute) (nirs4all.data.schema.config.PartitionConfig attribute) train_file (nirs4all.data.schema.config.PartitionConfig attribute) TRAIN_META (nirs4all.core.logging.events.EventType attribute) train_only (nirs4all.data.raw_multisource.CombinationPlan attribute) train_params (nirs4all.pipeline.dagml.native_pls_phase_controls.NativePlsPhaseControls attribute) train_ratio (nirs4all.synthesis.builder.BuilderState attribute) train_selected_classification() (in module nirs4all.pipeline.dagml.structural_classification) train_selected_topology() (in module nirs4all.pipeline.dagml.structural_topology) train_selected_typed_structure() (in module nirs4all.pipeline.dagml.structural_multimodal) train_values (nirs4all.data.schema.config.PartitionConfig attribute) training (nirs4all.pipeline.dagml.native_client.DagMLNativeCapabilities attribute) training_data_identity_from_binding() (in module nirs4all.pipeline.dagml.training_contracts) training_influence (nirs4all.pipeline.dagml.estimator.DagMLTrainingExecution attribute) (nirs4all.pipeline.dagml.terminal_predict_lowerer.StrictMethodsTerminalPredictionExecution attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLPreparedTrainingContracts attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingRequestContracts attribute) training_level() (nirs4all.core.logging.progress.MultiLevelProgress method) training_losses (nirs4all.pipeline.dagml.raw_training_lowerer.RawArrayDagMLTrainingCompiler attribute) transf_set() (in module nirs4all.operators.transforms.presets) TRANSFER (nirs4all.pipeline.retrainer.RetrainMode attribute) transfer_score (nirs4all.analysis.results.TransferResult attribute) transfer_training_steps() (in module nirs4all.api.general_transfer) TransferIdentity (class in nirs4all.pipeline.dagml.cv_weight_transfer) TransferInputContract (class in nirs4all.pipeline.dagml.cv_weight_transfer) TransferPreprocessingSelector (class in nirs4all.analysis.selector) TransferResult (class in nirs4all.analysis.results) TransferSelectionResults (class in nirs4all.analysis.results) TRANSFLECTANCE (nirs4all.synthesis.fitter.MeasurementModeInference attribute) TransflectanceConfig (class in nirs4all.synthesis.measurement_modes) TRANSFORM (nirs4all.core.logging.events.EventType attribute) transform() (nirs4all.api.general_transfer.FrozenTransferTransform method) (nirs4all.operators.augmentation.random.Random_X_Operation method) (nirs4all.operators.augmentation.random.Rotate_Translate method) (nirs4all.operators.augmentation.spectral.BandMasking method) (nirs4all.operators.augmentation.spectral.BandPerturbation method) (nirs4all.operators.augmentation.spectral.ChannelDropout method) (nirs4all.operators.augmentation.spectral.GaussianAdditiveNoise method) (nirs4all.operators.augmentation.spectral.GaussianSmoothingJitter method) (nirs4all.operators.augmentation.spectral.LocalClipping method) (nirs4all.operators.augmentation.spectral.LocalMixupAugmenter method) (nirs4all.operators.augmentation.spectral.MixupAugmenter method) (nirs4all.operators.augmentation.spectral.MultiplicativeNoise method) (nirs4all.operators.augmentation.spectral.SpikeNoise method) (nirs4all.operators.augmentation.spectral.UnsharpSpectralMask method) (nirs4all.operators.augmentation.splines.Spline_Curve_Simplification method) (nirs4all.operators.augmentation.splines.Spline_Smoothing method) (nirs4all.operators.augmentation.splines.Spline_X_Perturbations method) (nirs4all.operators.augmentation.splines.Spline_X_Simplification method) (nirs4all.operators.augmentation.splines.Spline_Y_Perturbations method) (nirs4all.operators.augmentation.synthesis.DeadBandAugmenter method) (nirs4all.operators.augmentation.synthesis.HeteroscedasticNoiseAugmenter method) (nirs4all.operators.augmentation.synthesis.PathLengthAugmenter method) (nirs4all.operators.methods.n4m_ops.MethodsSNV method) (nirs4all.operators.models.multimodal.TensorPCA method) (nirs4all.operators.models.sklearn.aom_fast.AbsorbanceBase method) (nirs4all.operators.models.sklearn.aom_fast.ASLSBase method) (nirs4all.operators.models.sklearn.aom_fast.BaseTransform method) (nirs4all.operators.models.sklearn.aom_fast.EMSCBase method) (nirs4all.operators.models.sklearn.aom_fast.MSCBase method) (nirs4all.operators.models.sklearn.aom_fast.OperatorChain method) (nirs4all.operators.models.sklearn.aom_fast.OSCBase method) (nirs4all.operators.models.sklearn.aom_fast.RawBase method) (nirs4all.operators.models.sklearn.aom_fast.SNVBase method) (nirs4all.operators.models.sklearn.aom_fast.SNVOSCBase method) (nirs4all.operators.models.sklearn.aom_fast.WhittakerBaseLine method) (nirs4all.operators.models.sklearn.aom_pls.LinearSpectralOperator method) (nirs4all.operators.models.sklearn.aom_ridge.AOMKernelizer method) (nirs4all.operators.models.sklearn.fckpls.FCKPLS method) (nirs4all.operators.models.sklearn.fckpls.FractionalConvFeaturizer method) (nirs4all.operators.models.sklearn.ipls.IntervalPLS method) (nirs4all.operators.models.sklearn.kopls.KOPLS method) (nirs4all.operators.models.sklearn.mbpls.MBPLS method) (nirs4all.operators.models.sklearn.oklmpls.IdentityFeaturizer method) (nirs4all.operators.models.sklearn.oklmpls.OKLMPLS method) (nirs4all.operators.models.sklearn.oklmpls.PolynomialFeaturizer method) (nirs4all.operators.models.sklearn.oklmpls.RBFFeaturizer method) (nirs4all.operators.models.sklearn.opls.OPLS method) (nirs4all.operators.models.sklearn.oplsda.OPLSDA method) (nirs4all.operators.models.sklearn.recursive_pls.RecursivePLS method) (nirs4all.operators.models.sklearn.robust_pls.RobustPLS method) (nirs4all.operators.models.sklearn.simpls.SIMPLS method) (nirs4all.operators.models.sklearn.sparsepls.SparsePLS method) (nirs4all.operators.transforms.concat.FeatureConcat method) (nirs4all.operators.transforms.fck_static.FCKStaticTransformer method) (nirs4all.operators.transforms.feature_selection.FlexiblePCA method) (nirs4all.operators.transforms.feature_selection.FlexibleSVD method) (nirs4all.operators.transforms.features.CropTransformer method) (nirs4all.operators.transforms.features.FlattenPreprocessing method) (nirs4all.operators.transforms.features.ResampleTransformer method) (nirs4all.operators.transforms.nirs.LogTransform method) (nirs4all.operators.transforms.nirs.PyBaselineCorrection method) (nirs4all.operators.transforms.nirs.ReflectanceToAbsorbance method) (nirs4all.operators.transforms.nirs.WaveletFeatures method) (nirs4all.operators.transforms.nirs.WaveletPCA method) (nirs4all.operators.transforms.nirs.WaveletSVD method) (nirs4all.operators.transforms.norris_williams.NorrisWilliams method) (nirs4all.operators.transforms.orthogonalization.EPO method) (nirs4all.operators.transforms.orthogonalization.OSC method) (nirs4all.operators.transforms.scalers.Derivate method) (nirs4all.operators.transforms.scalers.LocalStandardNormalVariate method) (nirs4all.operators.transforms.scalers.Normalize method) (nirs4all.operators.transforms.scalers.SimpleScale method) (nirs4all.operators.transforms.sequence.SequenceSummary method) (nirs4all.operators.transforms.signal.Baseline method) (nirs4all.operators.transforms.signal_conversion.FractionToPercent method) (nirs4all.operators.transforms.signal_conversion.FromAbsorbance method) (nirs4all.operators.transforms.signal_conversion.KubelkaMunk method) (nirs4all.operators.transforms.signal_conversion.PercentToFraction method) (nirs4all.operators.transforms.signal_conversion.SignalTypeConverter method) (nirs4all.operators.transforms.signal_conversion.ToAbsorbance method) (nirs4all.operators.transforms.targets.IntegerKBinsDiscretizer method) (nirs4all.operators.transforms.targets.RangeDiscretizer method) (nirs4all.operators.transforms.wavelet_denoise.WaveletDenoise method) (nirs4all.pipeline.dagml.auto_transfer.DagMLAutoTransferPreprocessor method) (nirs4all.pipeline.dagml.na_policy.ReplaceMissingValues method) (nirs4all.pipeline.dagml.run_paths.DuplicationBranchMergeTransformer method) (nirs4all.pipeline.dagml.target_capture.CapturedTargetTransform method) (nirs4all.pipeline.execution.preprocessing.PreprocessingReplay method) transformer() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) transformer_classification() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) transformer_model() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) transformer_model_classification() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) transformer_VG() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) transformer_VG_classification() (in module nirs4all.operators.models.jax.nicon) (in module nirs4all.operators.models.pytorch.nicon) (in module nirs4all.operators.models.tensorflow.nicon) TransformerBlock (class in nirs4all.operators.models.jax.nicon) transforms (nirs4all.analysis.results.TransferResult attribute) transition_to() (nirs4all.pipeline.run.Run method) TRANSMITTANCE (nirs4all.data.schema.config.SignalTypeEnum attribute) (nirs4all.synthesis.fitter.MeasurementModeInference attribute) TRANSMITTANCE_PERCENT (nirs4all.data.schema.config.SignalTypeEnum attribute) TransmittanceConfig (class in nirs4all.synthesis.measurement_modes) trial_index (nirs4all.pipeline.dagml.pipeline_objective.PipelineObjectiveResult attribute) trts_r2 (nirs4all.synthesis.validation.DatasetComparisonResult attribute) true_label (nirs4all.api.inspector_views.ConfusionMatrixCell attribute) TRUNCATE (nirs4all.data.relations.MissingRepetitionPolicy attribute) (nirs4all.operators.data.merge.ShapeMismatchStrategy attribute) (nirs4all.operators.data.merge.SourceIncompatibleStrategy attribute) (nirs4all.operators.data.repetition.UnequelRepsStrategy attribute) TruncatedPeakAugmenter (class in nirs4all.operators.augmentation.edge_artifacts) truth (nirs4all.pipeline.dagml.native_conformal_calibration.NativeConformalCalibrationReplay attribute) tstr_r2 (nirs4all.synthesis.validation.DatasetComparisonResult attribute) tune_native() (in module nirs4all.api.public_tuning) tune_single_estimator() (in module nirs4all.api.tuning) TunedSingleEstimatorConformalResult (class in nirs4all.api.tuning) tuning (nirs4all.api.native_session.NativeMethodsSession property) tuning_best_params (nirs4all.api.native_archive_training.NativeMethodsArchiveRunResult property) (nirs4all.api.tuning.TunedSingleEstimatorConformalResult property) tuning_best_value (nirs4all.api.native_archive_training.NativeMethodsArchiveRunResult property) (nirs4all.api.tuning.TunedSingleEstimatorConformalResult property) tuning_calibration_source (nirs4all.pipeline.dagml.conformal_contracts.CalibratedRunResult property) tuning_fingerprint (nirs4all.pipeline.dagml.pipeline_objective.PipelineObjectiveResult attribute) tuning_id (nirs4all.api.tuning.TunedSingleEstimatorConformalResult property) (nirs4all.pipeline.dagml.tuning_adapters.ObjectiveTuningRunResult attribute) tuning_result (nirs4all.api.tuning.TunedSingleEstimatorConformalResult property) (nirs4all.pipeline.dagml.tuning_adapters.ObjectiveTuningRunResult attribute) tuning_resume_package (nirs4all.api.native_archive_training.NativeMethodsArchiveRunResult property) tuning_scope_results (nirs4all.api.native_archive_training.NativeMethodsArchiveRunResult property) tuning_space_inspect() (in module nirs4all.cli.commands.tuning_space) tuning_space_schema_json() (in module nirs4all.api.tuning) tuning_summary_schema_export() (in module nirs4all.cli.commands.tuning_summary_schema) TuningAdapterUnavailable TuningCalibration (class in nirs4all.api.tuning) TuningConformalScoreCalibration (class in nirs4all.api.tuning) TuningPassthrough (class in nirs4all.api.tuning) TuningScoreData (class in nirs4all.api.tuning) TuningWinner (class in nirs4all.api.tuning) type (nirs4all.api.inspector_views.TopologyNode attribute) (nirs4all.data.schema.config.PartitionConfig attribute) type_error() (nirs4all.data.schema.validation.error_codes.DiagnosticBuilder method) typical_components (nirs4all.synthesis.domains.DomainConfig attribute) typical_peak_density (nirs4all.synthesis.benchmarks.BenchmarkDatasetInfo attribute) typical_sample_types (nirs4all.synthesis.domains.DomainConfig attribute) typical_snr (nirs4all.synthesis.benchmarks.BenchmarkDatasetInfo attribute)

U

U (nirs4all.operators.models.sklearn.aom_fast.LowRankBase attribute) unchanged (nirs4all.data.serialization.serializer.ConfigDiff attribute) UnequelRepsStrategy (class in nirs4all.operators.data.repetition) UNET() (in module nirs4all.operators.models.tensorflow.generic) UNet_NIRS() (in module nirs4all.operators.models.tensorflow.generic) UNIFORM (nirs4all.synthesis.products.VariationType attribute) UNIFORM_ROWS (nirs4all.data.fit_influence.FitInfluenceMode attribute) unit (nirs4all.api.tuning.TuningCalibration attribute) UNIT (nirs4all.data.reduction.ReductionAxis attribute) unit (nirs4all.pipeline.dagml.conformal_contracts.CalibratedPredictionBlock attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationCohortManifest attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationSpec attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalMetricSet attribute) (nirs4all.pipeline.dagml.conformal_contracts.SplitConformalCalibrator attribute) unit_id (nirs4all.data.relations.ObservationRecord attribute) unit_ids (nirs4all.data.meta_features.AlignedMetaFeatures attribute) (nirs4all.data.meta_features.PredictionFeatureVector attribute) (nirs4all.data.raw_multisource.AlignedMaterialization attribute) unit_level (nirs4all.data.raw_multisource.RepresentationPlan attribute) (nirs4all.data.relations.ObservationRecord attribute) UnitLevel (class in nirs4all.data.relations) units (nirs4all.pipeline.execution.preprocessing.PreprocessingReplay attribute) UNKNOWN (nirs4all.controllers.models.stacking.classification.StackingTaskType attribute) (nirs4all.pipeline.resolver.SourceType attribute) (nirs4all.pipeline.steps.parser.StepType attribute) (nirs4all.synthesis.fitter.MeasurementModeInference attribute) (nirs4all.synthesis.fitter.PreprocessingType attribute) unknown_policy (nirs4all.data.schema.config.PartitionConfig attribute) unregister_preset() (in module nirs4all.pipeline.config.generator) unsafe (nirs4all.operators.data.merge.MergeConfig attribute) UnsharpSpectralMask (class in nirs4all.operators.augmentation.spectral) unsupported_capability (nirs4all.api.advanced_capabilities.AdvancedApiCapabilityDecision attribute) unsupported_reason (nirs4all.pipeline.execution.preprocessing.FoldPreprocessing attribute) update() (nirs4all.core.logging.progress.EvaluationProgress method) (nirs4all.core.logging.progress.ProgressBar method) (nirs4all.core.logging.progress.SpinnerProgress method) updated_context (nirs4all.pipeline.execution.result.StepResult attribute) upgrade_workspace_copy() (in module nirs4all.workspace.upgrade) upper (nirs4all.pipeline.dagml.conformal_contracts.ConformalIntervalBlock attribute) (nirs4all.pipeline.dagml.native_archive_replay.NativeArchiveConformalInterval attribute)

use_absorbance (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) use_colors (nirs4all.core.logging.progress.ProgressConfig attribute) use_emsc (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) use_msc (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) use_multi_source() (nirs4all.controllers.charts.augmentation.AugmentationChartController class method) (nirs4all.controllers.charts.exclusion.ExclusionChartController class method) (nirs4all.controllers.charts.folds.FoldChartController class method) (nirs4all.controllers.charts.spectra.SpectraChartController class method) (nirs4all.controllers.charts.spectral_distribution.SpectralDistributionController class method) (nirs4all.controllers.charts.targets.YChartController class method) (nirs4all.controllers.data.auto_transfer_preproc.AutoTransferPreprocessingController class method) (nirs4all.controllers.data.branch.BranchController class method) (nirs4all.controllers.data.concat_transform.ConcatAugmentationController class method) (nirs4all.controllers.data.exclude.ExcludeController class method) (nirs4all.controllers.data.feature_augmentation.FeatureAugmentationController class method) (nirs4all.controllers.data.feature_selection.FeatureSelectionController class method) (nirs4all.controllers.data.merge.MergeController class method) (nirs4all.controllers.data.rep_fusion.RepFusionController class method) (nirs4all.controllers.data.repetition.RepToPPController class method) (nirs4all.controllers.data.repetition.RepToSourcesController class method) (nirs4all.controllers.data.resampler.ResamplerController class method) (nirs4all.controllers.data.sample_augmentation.SampleAugmentationController class method) (nirs4all.controllers.data.tag.TagController class method) (nirs4all.controllers.flow.dummy.DummyController class method) (nirs4all.controllers.models.residual_model.ResidualModelController class method) (nirs4all.controllers.splitters.fold_file_loader.FoldFileLoaderController class method) (nirs4all.controllers.splitters.split.CrossValidatorController class method) (nirs4all.controllers.transforms.y_transformer.YTransformerMixinController class method) use_proba (nirs4all.operators.data.merge.MergeConfig attribute) use_raw (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) use_reconstructor (nirs4all.controllers.models.meta_model.MetaModelController attribute) use_snv (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) use_snv_osc (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute) use_unicode (nirs4all.core.logging.progress.ProgressConfig attribute) user_defined (nirs4all.operators.transforms.scalers.Normalize property) uses_dataset_aggregate (nirs4all.operators.data.repetition.RepetitionConfig property) uses_group_by (nirs4all.controllers.splitters.split.ResolvedSplitGroups attribute) uses_repetition (nirs4all.controllers.splitters.split.ResolvedSplitGroups attribute)

V

V (nirs4all.operators.models.sklearn.aom_fast.LowRankBase property) val (nirs4all.data.schema.config.FoldDefinition attribute) VALIDATE (nirs4all.core.logging.events.EventType attribute) validate (nirs4all.pipeline.config.portable_method_specs.PortableMethodSpec attribute) validate() (nirs4all.controllers.base.BaseController method) (nirs4all.controllers.models.stacking.reconstructor.FoldAlignmentValidator method) (nirs4all.data.reduction.ReducerState method) (nirs4all.data.relations.NormalizedObservationTable method) (nirs4all.data.schema.validation.validators.ConfigValidator method) (nirs4all.pipeline.config.generator.CartesianStrategy method) (nirs4all.pipeline.config.generator.ChainStrategy method) (nirs4all.pipeline.config.generator.ExpansionStrategy method) (nirs4all.pipeline.config.generator.GridStrategy method) (nirs4all.pipeline.config.generator.LogRangeStrategy method) (nirs4all.pipeline.config.generator.OrStrategy method) (nirs4all.pipeline.config.generator.RangeStrategy method) (nirs4all.pipeline.config.generator.SampleStrategy method) (nirs4all.pipeline.config.generator.ZipStrategy method) (nirs4all.pipeline.dagml.torch_topology_replay.CapturedTorchTopology method) (nirs4all.synthesis.components.SpectralComponent method) validate_against_benchmark() (in module nirs4all.synthesis.validation) validate_all_branches_scope() (in module nirs4all.controllers.models.stacking.crossbranch) validate_alpha_space() (in module nirs4all.pipeline.dagml.structural_multimodal) validate_artifact_id() (in module nirs4all.pipeline.storage.artifacts.utils) validate_chart_projection() (in module nirs4all.pipeline.dagml.chart_projection) validate_component_coverage() (in module nirs4all.synthesis.components) validate_concentrations() (in module nirs4all.synthesis.validation) validate_config() (in module nirs4all.data.schema.validation.validators) (in module nirs4all.pipeline.config.generator) validate_config_file() (in module nirs4all.config.validator) validate_constraints() (in module nirs4all.pipeline.config.generator) validate_core_methods_archive_v2() (in module nirs4all.pipeline.dagml.core_archive_replay) validate_count_space() (in module nirs4all.pipeline.dagml.structural_classification) validate_data_id() (in module nirs4all.pipeline.dagml.identity) validate_dataset_config() (in module nirs4all.config.validator) validate_dependencies() (in module nirs4all.pipeline.dagml.multimodal_contracts) validate_disjoint_conditions() (in module nirs4all.controllers.data.branch_utils) validate_expanded_configs() (in module nirs4all.pipeline.config.generator) validate_fold_source() (nirs4all.data.schema.config.FoldConfig method) validate_fold_splitter() (in module nirs4all.pipeline.dagml.native_pls_fold_hpo) validate_host_finetune() (in module nirs4all.pipeline.dagml.host_finetune) validate_input_contract() (in module nirs4all.pipeline.dagml.multimodal_contracts) validate_inputs() (nirs4all.visualization.charts.base.BaseChart method) (nirs4all.visualization.charts.candlestick.CandlestickChart method) (nirs4all.visualization.charts.confusion_matrix.ConfusionMatrixChart method) (nirs4all.visualization.charts.heatmap.HeatmapChart method) (nirs4all.visualization.charts.histogram.ScoreHistogramChart method) (nirs4all.visualization.charts.top_k_comparison.TopKComparisonChart method) validate_late_partial_archive_contract() (in module nirs4all.pipeline.dagml.multimodal_contracts) validate_late_partial_refit_origin() (in module nirs4all.pipeline.dagml.multimodal_contracts) validate_late_partial_stack() (in module nirs4all.pipeline.dagml.multimodal_contracts) validate_methods_archive_v2() (in module nirs4all.pipeline.dagml.native_archive_replay) validate_minimal_pipeline() (nirs4all.pipeline.minimal_predictor.MinimalPredictor method) validate_multi_level_stacking() (in module nirs4all.controllers.models.stacking.multilevel) validate_named_archive_contract() (in module nirs4all.pipeline.dagml.multimodal_contracts) validate_native_capability_matrix() (in module nirs4all.api.native_capabilities) validate_native_methods_package() (in module nirs4all.pipeline.dagml.raw_replay_lowerer) validate_native_methods_refit_package_v3() (in module nirs4all.pipeline.dagml.raw_replay_lowerer) validate_nested_local_finetune() (in module nirs4all.pipeline.dagml.late_tuning) validate_partition_method() (nirs4all.data.schema.config.PartitionConfig method) validate_pipeline_config() (in module nirs4all.config.validator) validate_predefined_components() (in module nirs4all.synthesis.components) validate_refit_attestation() (in module nirs4all.pipeline.dagml.torch_topology_replay) validate_relation_safety() (nirs4all.operators.data.merge.MergeConfig method)

validate_sgd_profile() (in module nirs4all.pipeline.dagml.cv_weight_transfer) validate_source_archive_before_model() (in module nirs4all.pipeline.dagml.attested_by_source) validate_source_package_bindings() (in module nirs4all.pipeline.dagml.attested_by_source) validate_source_selection_alternatives() (in module nirs4all.pipeline.dagml.structural_sources) validate_spec() (in module nirs4all.pipeline.config.generator) validate_spectra() (in module nirs4all.synthesis.validation) validate_stacking_archive_contract() (in module nirs4all.pipeline.dagml.multimodal_contracts) validate_structural_profile() (in module nirs4all.pipeline.dagml.structural_tuning) validate_studio_pipeline_config() (in module nirs4all.api.studio_scientific_general) validate_studio_provenance() (in module nirs4all.api.studio_lineage) validate_synthetic_output() (in module nirs4all.synthesis.validation) validate_task() (nirs4all.data.reduction.ReductionPlan method) validate_torch_space() (in module nirs4all.pipeline.dagml.structural_torch) validate_training_profile() (in module nirs4all.pipeline.dagml.methods_multimodal) validate_training_request_with_dagml() (in module nirs4all.pipeline.dagml.training_contracts) validate_transfer_input() (in module nirs4all.pipeline.dagml.cv_weight_transfer) validate_typed_profile() (in module nirs4all.pipeline.dagml.structural_multimodal) validate_wavelengths() (in module nirs4all.synthesis.validation) validation_folds (nirs4all.controllers.models.pipeline_cv.PrecomputedFoldSplitter property) ValidationError, [1] (class in nirs4all.controllers.models.stacking.reconstructor) (class in nirs4all.data.schema.validation.validators) ValidationResult (class in nirs4all.controllers.models.stacking.reconstructor) (class in nirs4all.data.schema.validation.validators) (class in nirs4all.pipeline.config.generator) ValidationSeverity (class in nirs4all.pipeline.config.generator) ValidationWarning (class in nirs4all.controllers.models.stacking.reconstructor) (class in nirs4all.data.schema.validation.validators) value (nirs4all.api.inspector_views.HeatmapCell attribute) (nirs4all.api.tuning.ParameterPatch attribute) (nirs4all.data.schema.validation.validators.ValidationError attribute) (nirs4all.synthesis.products.ComponentVariation attribute) (nirs4all.synthesis.validation.MetricResult attribute) values (nirs4all.data.meta_features.PredictionFeatureVector attribute) (nirs4all.pipeline.dagml.native_archive_replay.NativeArchivePrediction attribute) variance (nirs4all.api.inspector_views.BiasVarianceEntry attribute) (nirs4all.pipeline.analysis.model_diagnostics.BiasVarianceDecomposition attribute) VarianceFitResult (class in nirs4all.synthesis.fitter) VarianceFitter (class in nirs4all.synthesis.fitter) variant_index (nirs4all.pipeline.execution.refit.model_selector.PerModelSelection attribute) variant_label (nirs4all.pipeline.dagml.cv_weight_transfer.TransferIdentity attribute) VARIATION (nirs4all.data.schema.validation.error_codes.ErrorCategory attribute) variation_type (nirs4all.synthesis.products.ComponentVariation attribute) VariationsParser (class in nirs4all.data.parsers.files_parser) VariationType (class in nirs4all.synthesis.products) verb (nirs4all.api.advanced_capabilities.AdvancedApiCapabilityDecision attribute) verify_host_artifacts() (in module nirs4all.pipeline.dagml.host_artifacts) version (nirs4all.api.robustness.RobustnessMetricSet attribute) (nirs4all.api.robustness.RobustnessReport attribute) (nirs4all.api.robustness.RobustnessScenarioResult attribute) (nirs4all.api.robustness.RobustnessSliceResult attribute) (nirs4all.data.raw_multisource.CombinationPlan attribute) (nirs4all.data.raw_multisource.RepresentationPlan attribute) (nirs4all.data.relation_replay_manifest.RelationReplayManifest attribute) (nirs4all.pipeline.dagml.conformal_contracts.CalibratedRunResult attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationArtifact attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalCalibrationCohortManifest attribute) (nirs4all.pipeline.dagml.conformal_contracts.ConformalMetricSet attribute) (nirs4all.pipeline.dagml.conformal_store.ConformalStoreManifest attribute) (nirs4all.pipeline.run.DatasetInfo attribute) VGG_1D() (in module nirs4all.operators.models.tensorflow.generic) VINYL (nirs4all.synthesis.procedural.FunctionalGroupType attribute) VOTE (nirs4all.data.reduction.ReductionMethod attribute) (nirs4all.data.schema.config.AggregateMethod attribute) Vt (nirs4all.operators.models.sklearn.aom_fast.LowRankBase attribute)

W

WarmStartRequest (class in nirs4all.pipeline.dagml.cv_weight_transfer) warn_if_legacy_workspace() (in module nirs4all.workspace.compat) WARNING (nirs4all.core.logging.events.EventType attribute) (nirs4all.data.schema.validation.error_codes.ErrorSeverity attribute) (nirs4all.pipeline.config.generator.ValidationSeverity attribute) warnings (nirs4all.controllers.models.stacking.reconstructor.ValidationResult attribute) (nirs4all.data.detection.detector.DetectionResult attribute) (nirs4all.data.parsers.base.ParserResult attribute) (nirs4all.data.schema.validation.error_codes.DiagnosticReport property) (nirs4all.data.schema.validation.validators.ValidationResult attribute) (nirs4all.pipeline.config.generator.ValidationResult attribute) (nirs4all.pipeline.dagml.estimator.DagMLReplayExecution attribute) (nirs4all.pipeline.dagml.estimator.DagMLTrainingExecution attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLPreparedTrainingContracts attribute) (nirs4all.pipeline.dagml.training_compiler.DagMLTrainingRequestContracts attribute) (nirs4all.synthesis.validation.SpectralRealismScore attribute) WATER (nirs4all.synthesis.procedural.FunctionalGroupType attribute) water_activity (nirs4all.synthesis.environmental.MoistureConfig attribute) water_band_intensity (nirs4all.synthesis.fitter.SpectralProperties attribute) water_band_shift (nirs4all.synthesis.fitter.EnvironmentalInference attribute) water_band_variation (nirs4all.synthesis.fitter.SpectralProperties attribute) WATER_BANDS_CM1 (nirs4all.data.signal_type.SignalTypeDetector attribute) WATER_BANDS_NM (nirs4all.data.signal_type.SignalTypeDetector attribute) WATER_BOUND (nirs4all.synthesis.environmental.SpectralRegion attribute) WATER_FREE (nirs4all.synthesis.environmental.SpectralRegion attribute) WAVELENGTH (nirs4all.data.schema.config.HeaderUnit attribute) wavelength_end (nirs4all.synthesis.builder.BuilderState attribute) (nirs4all.synthesis.fitter.FittedParameters attribute) (nirs4all.synthesis.sources.SourceConfig attribute) wavelength_exponent (nirs4all.synthesis.measurement_modes.ScatteringConfig attribute) (nirs4all.synthesis.scattering.ScatteringCoefficientConfig attribute) wavelength_nm (nirs4all.synthesis.wavenumber.CombinationBandResult attribute) (nirs4all.synthesis.wavenumber.OvertoneResult attribute) wavelength_range (nirs4all.pipeline.run.DatasetInfo attribute) (nirs4all.synthesis.benchmarks.BenchmarkDatasetInfo attribute) (nirs4all.synthesis.domains.DomainConfig attribute) (nirs4all.synthesis.environmental.TemperatureEffectParams attribute) (nirs4all.synthesis.fitter.InstrumentInference attribute) (nirs4all.synthesis.fitter.SpectralProperties attribute) (nirs4all.synthesis.procedural.ProceduralComponentConfig attribute) wavelength_reference_nm (nirs4all.synthesis.scattering.ScatteringCoefficientConfig attribute) wavelength_start (nirs4all.synthesis.builder.BuilderState attribute) (nirs4all.synthesis.fitter.FittedParameters attribute) (nirs4all.synthesis.sources.SourceConfig attribute) wavelength_step (nirs4all.synthesis.builder.BuilderState attribute) (nirs4all.synthesis.fitter.FittedParameters attribute) (nirs4all.synthesis.sources.SourceConfig attribute) wavelength_to_wavenumber() (in module nirs4all.synthesis.wavenumber) wavelength_unit (nirs4all.pipeline.run.DatasetInfo attribute) wavelengths (nirs4all.synthesis.benchmarks.LoadedBenchmarkDataset attribute) (nirs4all.synthesis.detectors.DetectorSpectralResponse attribute) (nirs4all.synthesis.fitter.ComponentFitResult attribute) (nirs4all.synthesis.fitter.OptimizedFitResult attribute) (nirs4all.synthesis.fitter.RealBandFitResult attribute) (nirs4all.synthesis.fitter.SpectralProperties attribute) (nirs4all.synthesis.fitter.VarianceFitResult attribute) (nirs4all.synthesis.sources.MultiSourceResult attribute) WavelengthShift (class in nirs4all.operators.augmentation.spectral) WavelengthStretch (class in nirs4all.operators.augmentation.spectral) wavelet_denoise() (in module nirs4all.operators.transforms.wavelet_denoise) wavelet_transform() (in module nirs4all.operators.transforms.nirs) WaveletDenoise (class in nirs4all.operators.transforms.wavelet_denoise) WaveletFeatures (class in nirs4all.operators.transforms.nirs) WaveletPCA (class in nirs4all.operators.transforms.nirs) WaveletSVD (class in nirs4all.operators.transforms.nirs) WAVENUMBER (nirs4all.data.schema.config.HeaderUnit attribute) wavenumber_cm (nirs4all.synthesis.wavenumber.CombinationBandResult attribute) (nirs4all.synthesis.wavenumber.OvertoneResult attribute) wavenumber_to_wavelength() (in module nirs4all.synthesis.wavenumber) weight_source (nirs4all.data.reduction.ReductionPlan attribute) WEIGHTED_AVERAGE (nirs4all.pipeline.resolver.FoldStrategy attribute) weighted_fit_kwargs() (in module nirs4all.pipeline.dagml.experimental_units) WEIGHTED_MEAN (nirs4all.data.reduction.ReductionMethod attribute) whittaker_baseline_lam (nirs4all.operators.models.sklearn.aom_fast.FastAOMConfig attribute)

WhittakerBaseLine (class in nirs4all.operators.models.sklearn.aom_fast) WhittakerOperator (class in nirs4all.operators.models.sklearn.aom_pls) window_shape (nirs4all.operators.models.jax.nicon.MaxPooling1D attribute) winner (nirs4all.api.tuning.NativeTuning attribute) winner_sample_ids (nirs4all.api.tuning.TuningWinner attribute) with_artifact_loader() (nirs4all.pipeline.execution.builder.ExecutorBuilder method) with_artifact_registry() (nirs4all.pipeline.execution.builder.ExecutorBuilder method) with_augmented() (nirs4all.pipeline.config.context.DataSelector method) with_branch() (nirs4all.pipeline.config.context.DataSelector method) with_comma_delimiter() (nirs4all.synthesis.exporter.CSVVariationGenerator method) with_continue_on_error() (nirs4all.pipeline.execution.builder.ExecutorBuilder method) with_equal_sample_influence() (nirs4all.data.relations.NormalizedObservationTable method) with_figure_refs() (nirs4all.pipeline.execution.builder.ExecutorBuilder method) with_fold() (nirs4all.pipeline.config.context.DataSelector method) with_layout() (nirs4all.pipeline.config.context.DataSelector method) with_mode() (nirs4all.pipeline.execution.builder.ExecutorBuilder method) with_partition() (nirs4all.pipeline.config.context.DataSelector method) with_plots_visible() (nirs4all.pipeline.execution.builder.ExecutorBuilder method) with_precision() (nirs4all.synthesis.exporter.CSVVariationGenerator method) with_processing() (nirs4all.pipeline.config.context.DataSelector method) with_row_index() (nirs4all.synthesis.exporter.CSVVariationGenerator method) with_save_artifacts() (nirs4all.pipeline.execution.builder.ExecutorBuilder method) with_save_charts() (nirs4all.pipeline.execution.builder.ExecutorBuilder method) with_semicolon_delimiter() (nirs4all.synthesis.exporter.CSVVariationGenerator method) with_show_spinner() (nirs4all.pipeline.execution.builder.ExecutorBuilder method) with_step_runner() (nirs4all.pipeline.execution.builder.ExecutorBuilder method) with_store() (nirs4all.pipeline.execution.builder.ExecutorBuilder method) with_tab_delimiter() (nirs4all.synthesis.exporter.CSVVariationGenerator method) with_tag_filter() (nirs4all.pipeline.config.context.DataSelector method) with_verbose() (nirs4all.pipeline.execution.builder.ExecutorBuilder method) with_workspace() (nirs4all.pipeline.execution.builder.ExecutorBuilder method) without_headers() (nirs4all.synthesis.exporter.CSVVariationGenerator method) wl_shift (nirs4all.synthesis.fitter.InstrumentChain attribute) wl_shift_bounds (nirs4all.synthesis.fitter.DerivativeAwareForwardModelFitter attribute) (nirs4all.synthesis.fitter.ForwardModelFitter attribute) wl_stretch (nirs4all.synthesis.fitter.InstrumentChain attribute) WORKFLOW (nirs4all.pipeline.steps.parser.StepType attribute) workspace (nirs4all.pipeline.execution.builder.ExecutorBuilder property) workspace_chain_id (nirs4all.api.calibrate.ConformalCalibrationData attribute) workspace_chain_snapshot() (in module nirs4all.api.workspace_chain_snapshot) workspace_conformal_id (nirs4all.api.tuning.TuningCalibration attribute) workspace_conformal_list() (in module nirs4all.cli.commands.workspace) workspace_conformal_predict() (in module nirs4all.cli.commands.workspace) workspace_conformal_show() (in module nirs4all.cli.commands.workspace) workspace_convert() (in module nirs4all.cli.commands.workspace) workspace_init() (in module nirs4all.cli.commands.workspace) workspace_inspect() (in module nirs4all.cli.commands.workspace) workspace_list_library() (in module nirs4all.cli.commands.workspace) workspace_list_runs() (in module nirs4all.cli.commands.workspace) workspace_metadata (nirs4all.api.tuning.NativeTuning attribute) (nirs4all.api.tuning.TuningCalibration attribute) workspace_path (nirs4all.api.calibrate.ConformalCalibrationData attribute) workspace_query_best() (in module nirs4all.cli.commands.workspace) workspace_query_filter() (in module nirs4all.cli.commands.workspace) workspace_robustness_evidence() (in module nirs4all.cli.commands.workspace) workspace_robustness_export() (in module nirs4all.cli.commands.workspace) workspace_robustness_from_prediction() (in module nirs4all.cli.commands.workspace) workspace_robustness_list() (in module nirs4all.cli.commands.workspace) workspace_robustness_show() (in module nirs4all.cli.commands.workspace) workspace_stats() (in module nirs4all.cli.commands.workspace) workspace_store_read_contract() (in module nirs4all.pipeline.storage.workspace_read_contract) workspace_store_results_summary_contract() (in module nirs4all.pipeline.storage.workspace_read_contract) workspace_tuning_export() (in module nirs4all.cli.commands.workspace) workspace_tuning_id (nirs4all.api.tuning.NativeTuning attribute) workspace_tuning_list() (in module nirs4all.cli.commands.workspace) workspace_tuning_show() (in module nirs4all.cli.commands.workspace) WorkspaceFormatInfo (class in nirs4all.workspace.compat) WorkspaceStoreProtocol (class in nirs4all.pipeline.storage.store_protocol) worst_slices() (nirs4all.api.robustness.RobustnessReport method) wrap() (nirs4all.core.logging.progress.ProgressBar class method) write_launcher_shim() (in module nirs4all.pipeline.dagml.cli_runner) write_methods_archive_v2() (in module nirs4all.pipeline.dagml.native_archive_replay) write_native_results() (in module nirs4all.pipeline.dagml.native_results) write_portable_predictor_archive_v2() (in module nirs4all.api.portable_archive) write_single_model_bundle() (in module nirs4all.pipeline.bundle.generator)

X

X (nirs4all.api.tuning.TuningConformalScoreCalibration attribute) (nirs4all.api.tuning.TuningScoreData attribute) (nirs4all.api.tuning.TuningWinner attribute) (nirs4all.data.meta_features.AlignedMetaFeatures attribute) (nirs4all.data.raw_multisource.AlignedMaterialization attribute) (nirs4all.pipeline.dagml.pipeline_objective_compiler.CompiledPipelineObjective attribute) (nirs4all.synthesis.benchmarks.LoadedBenchmarkDataset attribute) x() (nirs4all.data.multimodal.MultimodalSpectroDataset method) X_by_source (nirs4all.data.raw_multisource.RawMultiSourceDataset attribute) X_calibration (nirs4all.api.tuning.TuningConformalScoreCalibration attribute)

X_centred (nirs4all.operators.models.sklearn.aom_fast.LowRankBase attribute) x_dtype (nirs4all.pipeline.dagml.cv_weight_transfer.TransferInputContract attribute) x_label (nirs4all.api.inspector_views.HeatmapCell attribute) x_labels (nirs4all.api.inspector_views.HeatmapResponse attribute) X_length() (in module nirs4all.operators.augmentation.splines) x_rows() (nirs4all.data.multimodal.MultimodalSpectroDataset method) X_score (nirs4all.api.tuning.TuningScoreData attribute) x_variable (nirs4all.api.inspector_views.HeatmapRequest attribute) (nirs4all.api.inspector_views.HeatmapResponse attribute) XCeption1D() (in module nirs4all.operators.models.tensorflow.generic)

Y

y (nirs4all.api.tuning.TuningConformalScoreCalibration attribute) (nirs4all.api.tuning.TuningScoreData attribute) (nirs4all.pipeline.config.context.DataSelector attribute) (nirs4all.pipeline.dagml.pipeline_objective_compiler.CompiledPipelineObjective attribute) (nirs4all.synthesis.benchmarks.LoadedBenchmarkDataset attribute) y_calibration (nirs4all.api.tuning.TuningConformalScoreCalibration attribute) y_centred (nirs4all.operators.models.sklearn.aom_fast.LowRankBase attribute) y_columns (nirs4all.pipeline.run.DatasetInfo attribute) y_dtype (nirs4all.pipeline.dagml.cv_weight_transfer.TransferInputContract attribute) y_label (nirs4all.api.inspector_views.HeatmapCell attribute) y_labels (nirs4all.api.inspector_views.HeatmapResponse attribute) y_pred (nirs4all.api.calibrate.ConformalCalibrationData attribute) (nirs4all.api.inspector_views.ScatterPoint attribute) (nirs4all.api.tuning.TuningCalibration attribute) (nirs4all.controllers.models.components.prediction_assembler.PartitionPrediction attribute) (nirs4all.pipeline.dagml.conformal_contracts.CalibratedPredictionBlock attribute)

y_processing (nirs4all.pipeline.config.context.PipelineState attribute) y_score (nirs4all.api.tuning.TuningScoreData attribute) y_stats (nirs4all.pipeline.run.DatasetInfo attribute) y_true (nirs4all.api.calibrate.ConformalCalibrationData attribute) (nirs4all.api.inspector_views.ScatterPoint attribute) (nirs4all.api.tuning.TuningConformalScoreCalibration attribute) (nirs4all.api.tuning.TuningWinner attribute) (nirs4all.controllers.models.components.prediction_assembler.PartitionPrediction attribute) y_variable (nirs4all.api.inspector_views.HeatmapRequest attribute) (nirs4all.api.inspector_views.HeatmapResponse attribute) YAML (nirs4all.data.serialization.serializer.SerializationFormat attribute) YChartController (class in nirs4all.controllers.charts.targets) YOutlierFilter (class in nirs4all.operators.filters.y_outlier) YTransformerMixinController (class in nirs4all.controllers.transforms.y_transformer)

Z

zero_crossing_ratio (nirs4all.synthesis.fitter.PreprocessingInference attribute) zeros (nirs4all.synthesis.accelerated.AcceleratedArrays attribute)

ZIP (nirs4all.data.raw_multisource.ComboSelection attribute) ZipStrategy (class in nirs4all.pipeline.config.generator)